Acp5 (acid phosphatase 5, tartrate resistant) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Acp5 (acid phosphatase 5, tartrate resistant) Ictidomys tridecemlineatus
Analyze
Symbol: Acp5
Name: acid phosphatase 5, tartrate resistant
RGD ID: 12557961
Description: ENCODES a protein that exhibits acid phosphatase activity (ortholog); hydrolase activity (ortholog); INVOLVED IN bone resorption (ortholog); cellular response to zinc ion starvation (ortholog); dephosphorylation (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Alveolar Bone Loss (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acid phosphatase 5, tartrate resistant, transcript variant X1; acid phosphatase 5, tartrate resistant, transcript variant X2; acid phosphatase 5, tartrate resistant, transcript variant X3; acid phosphatase 5, tartrate resistant, transcript variant X4; tartrate-resistant acid phosphatase type 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,712,098 - 208,756,454 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,598,177 - 1,600,262 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,598,252 - 1,642,615 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5SquirrelAlveolar Bone Loss treatmentISORGD:20229068941associated with hypertension, periodontal diseaseRGDPMID:33364953|REF_RGD_ID:329956421
Acp5SquirrelExperimental Diabetes Mellitus  ISORGD:20229068941protein:increased activity:femoral bone (rat)RGDPMID:19699734|REF_RGD_ID:2315882
Acp5SquirrelPostmenopausal Osteoporosis  ISORGD:20229068941protein:increased expression:femur (rat)RGDPMID:19736603|REF_RGD_ID:2315910
Acp5SquirrelStress Fractures  ISORGD:20229068941protein:increased expression:tibia (rat)RGDPMID:19821772|REF_RGD_ID:2315909
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5Squirrelalpha-mannosidosis  ISORGD:100738554872ClinVar Annotator: match by term: Deficiency of alpha-mannosidaseClinVarPMID:28492532
Acp5SquirrelCharcot-Marie-Tooth disease dominant intermediate B  ISORGD:100738554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate BClinVarPMID:28492532
Acp5SquirrelCombined Immunodeficiency with Autoimmunity and Spondylometaphyseal Dysplasia  ISORGD:100738554872ClinVar Annotator: match by term: Spondyloenchondrodysplasia with immune dysregulationClinVarPMID:12786759|PMID:13524805|PMID:16470600|PMID:17576681|PMID:18924170|PMID:21217752|PMID:21217755|PMID:2363422|PMID:24033266|PMID:25741868|PMID:26346816|PMID:26789720|PMID:26951490|PMID:27125509|PMID:27390188|PMID:27718324|PMID:27943079|PMID:28492532|PMID:28740483|PMID:31286717|PMID:32214327|PMID:37382551|PMID:38347954|PMID:9536098
Acp5Squirrelepisodic ataxia type 2  ISORGD:100738554872ClinVar Annotator: match by term: Episodic ataxia type 2ClinVarPMID:28492532
Acp5Squirrelgenetic disease  ISORGD:100738554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:13524805|PMID:21217752|PMID:21217755|PMID:2363422|PMID:25741868|PMID:26951490|PMID:27125509|PMID:27390188|PMID:28492532|PMID:28740483|PMID:38347954
Acp5Squirrelglutaric acidemia I  ISORGD:100738554872ClinVar Annotator: match by term: Glutaric aciduria, type 1ClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5SquirrelExperimental Liver Cirrhosis  ISORGD:100739068941CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Acp5Squirrelobesity  ISORGD:100739068941CTD Direct Evidence: marker/mechanismCTDPMID:20882379
Acp5Squirrelsecondary hyperparathyroidism  ISORGD:100739068941CTD Direct Evidence: marker/mechanismCTDPMID:21985997|PMID:22373954
Acp5SquirrelSpondyloenchondrodysplasia  ISORGD:100739068941CTD Direct Evidence: marker/mechanismCTDPMID:21217752|PMID:21217755
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5SquirrelCombined Immunodeficiency with Autoimmunity and Spondylometaphyseal Dysplasia  ISORGD:100737240710 OMIM 


Biological Process
1 to 20 of 30 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5Squirrelbone morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelbone resorption  ISORGD:20229068941 RGDPMID:20069278|REF_RGD_ID:2315871
Acp5Squirrelbone resorption acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelbone resorption involved_inIEAPANTHER:PTN001300238150520179 TreeGrafterGO_REF:0000118
Acp5Squirrelcellular response to zinc ion starvation  ISORGD:20229068941 RGDPMID:21893222|REF_RGD_ID:151667428
Acp5Squirreldefense response to Gram-positive bacterium acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirreldephosphorylation acts_upstream_of_or_withinISORGD:100729068941 PMID:9308894MGIPMID:9308894
Acp5Squirrelmulticellular organismal response to stress  ISORGD:20229068941restraintRGDPMID:19113077|REF_RGD_ID:2315906
Acp5Squirrelnegative regulation of cell adhesion  ISORGD:20229068941 RGDPMID:19854170|REF_RGD_ID:2315877
Acp5Squirrelnegative regulation of inflammatory response acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of interleukin-1 beta production acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of interleukin-12 production acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of macrophage cytokine production acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of nitric oxide biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of superoxide anion generation acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnegative regulation of tumor necrosis factor production acts_upstream_of_or_withinIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelnitric oxide biosynthetic process acts_upstream_ofIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelossification  ISORGD:20229068941 RGDPMID:19403161|REF_RGD_ID:2315903
Acp5Squirrelosteoclast differentiation  ISORGD:20229068941 RGDPMID:19361364|REF_RGD_ID:2315902
Acp5Squirrelpositive regulation of cell migration  ISORGD:20229068941 RGDPMID:19854170|REF_RGD_ID:2315877
1 to 20 of 30 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5Squirrelextracellular space  ISORGD:20229068941 RGDPMID:20003323|REF_RGD_ID:2315874
Acp5Squirrellysosome located_inIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acp5Squirrelacid phosphatase activity  ISORGD:20229068941 RGDPMID:19854170|REF_RGD_ID:2315877
Acp5Squirrelacid phosphatase activity enablesIEAUniRule:UR000436752150520179 UniProtGO_REF:0000104
Acp5Squirrelacid phosphatase activity enablesIEAInterPro:IPR024927150520179 InterProGO_REF:0000002
Acp5Squirrelacid phosphatase activity enablesIEAUniProtKB:Q05117|ensembl:ENSMUSP00000150903150520179 EnsemblGO_REF:0000107
Acp5Squirrelacid phosphatase activity enablesIEAEC:3.1.3.2150520179 UniProtGO_REF:0000003
Acp5Squirrelferric iron binding enablesIEAUniProtKB:P13686|ensembl:ENSP00000496973150520179 EnsemblGO_REF:0000107
Acp5Squirrelferrous iron binding enablesIEAUniProtKB:P13686|ensembl:ENSP00000496973150520179 EnsemblGO_REF:0000107
Acp5Squirrelhydrolase activity  ISORGD:20229068941 RGDPMID:11890682|REF_RGD_ID:619585
Acp5Squirrelhydrolase activity enablesIEAInterPro:IPR004843150520179 InterProGO_REF:0000002
Acp5Squirrelhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
Acp5Squirrelmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
1 to 11 of 11 rows

PMID:22301074   PMID:30032202  



Acp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,712,098 - 208,756,454 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,598,177 - 1,600,262 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,598,252 - 1,642,615 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,574,660 - 11,578,975 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,574,653 - 11,579,993 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,685,475 - 11,689,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,546,477 - 11,549,496 (-)NCBINCBI36Build 36hg18NCBI36
Build 341911,546,476 - 11,549,496NCBI
Celera1911,580,213 - 11,584,539 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,259,840 - 11,264,071 (-)NCBIHuRef
CHM1_11911,685,335 - 11,689,664 (-)NCBICHM1_1
T2T-CHM13v2.01911,702,190 - 11,706,505 (-)NCBIT2T-CHM13v2.0
Acp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,038,023 - 22,047,042 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,038,023 - 22,047,007 (-)EnsemblGRCm39 Ensembl
GRCm38922,126,727 - 22,135,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,126,727 - 22,135,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,931,171 - 21,940,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,877,148 - 21,881,056 (-)NCBIMGSCv36mm8
Celera919,395,697 - 19,404,716 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.38NCBI
Acp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,939,984 - 28,946,639 (-)NCBIGRCr8
mRatBN7.2820,663,984 - 20,670,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,663,985 - 20,667,929 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,693,289 - 24,698,588 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,990,432 - 22,995,731 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,893,525 - 20,899,471 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,142,733 - 23,149,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,142,734 - 23,148,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,197,095 - 23,202,903 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera822,052,728 - 22,058,674 (-)NCBICelera
Cytogenetic Map8q13NCBI
Acp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,418,364 - 2,421,538 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,418,113 - 2,421,181 (+)NCBIChiLan1.0ChiLan1.0
ACP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,486,997 - 16,495,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,482,421 - 15,489,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,120,451 - 11,125,167 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,832,575 - 11,836,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,832,575 - 11,835,203 (-)Ensemblpanpan1.1panPan2
ACP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,812,444 - 49,816,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,814,032 - 49,816,260 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,684,989 - 49,687,385 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,330,836 - 50,334,545 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,332,449 - 50,334,544 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,542,471 - 49,544,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,968,636 - 49,971,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,211,593 - 50,213,981 (+)NCBIUU_Cfam_GSD_1.0
ACP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,206,162 - 70,208,229 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,206,159 - 70,209,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,615,520 - 70,616,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap2q12-q21NCBI
ACP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,488,572 - 10,493,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,488,460 - 10,491,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660749,350,068 - 9,354,653 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,307,635 - 3,310,547 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,305,913 - 3,309,983 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSSTOT00000003691   ⟹   ENSSTOP00000003304
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366591,598,177 - 1,600,262 (-)Ensembl
RefSeq Acc Id: XM_005336184   ⟹   XP_005336241
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,712,098 - 208,756,454 (+)NCBI
SpeTri2.0NW_0049366591,598,252 - 1,642,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013363321   ⟹   XP_013218775
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,712,098 - 208,756,454 (+)NCBI
SpeTri2.0NW_0049366591,598,252 - 1,642,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733888   ⟹   XP_021589563
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,753,249 - 208,756,454 (+)NCBI
SpeTri2.0NW_0049366591,598,252 - 1,600,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733889   ⟹   XP_021589564
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,752,017 - 208,756,454 (+)NCBI
SpeTri2.0NW_0049366591,598,252 - 1,601,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040290420   ⟹   XP_040146354
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,752,018 - 208,756,454 (+)NCBI
RefSeq Acc Id: XM_040290421   ⟹   XP_040146355
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118208,712,098 - 208,756,454 (+)NCBI
RefSeq Acc Id: XP_013218775   ⟸   XM_013363321
- UniProtKB: I3M2S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336241   ⟸   XM_005336184
- UniProtKB: I3M2S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589564   ⟸   XM_021733889
- UniProtKB: I3M2S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589563   ⟸   XM_021733888
- UniProtKB: I3M2S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040146355   ⟸   XM_040290421
- UniProtKB: I3M2S1 (UniProtKB/TrEMBL)


1 to 14 of 14 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000003699 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003691.3 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/TrEMBL
InterPro Acid_PPase UniProtKB/TrEMBL
  Calcineurin-like_PHP_ApaH UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/TrEMBL
  Metallophosphoesterase_PAP UniProtKB/TrEMBL
NCBI Gene Acp5 ENTREZGENE
PANTHER TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 UniProtKB/TrEMBL
  TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 UniProtKB/TrEMBL
Pfam Metallophos UniProtKB/TrEMBL
PIRSF Acid_Ptase_5 UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/TrEMBL
UniProt I3M2S1 ENTREZGENE, UniProtKB/TrEMBL
1 to 14 of 14 rows