Casq2 (calsequestrin 2) - Rat Genome Database

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Gene: Casq2 (calsequestrin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Casq2
Name: calsequestrin 2
RGD ID: 12544768
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN negative regulation of potassium ion transmembrane transporter activity (ortholog); negative regulation of potassium ion transport (ortholog); negative regulation of ryanodine-sensitive calcium-release channel activity (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Cardiac Arrhythmias (ortholog); Cardiac Conduction Defect (ortholog); FOUND IN junctional membrane complex (ortholog); sarcoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calsequestrin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505813,419,602 - 13,487,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366271,001,678 - 1,069,438 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366271,001,681 - 1,069,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Casq2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505813,419,602 - 13,487,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366271,001,678 - 1,069,438 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366271,001,681 - 1,069,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CASQ2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381115,700,021 - 115,768,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1115,698,038 - 115,837,921 (-)EnsemblGRCh38hg38GRCh38
GRCh371116,242,642 - 116,311,335 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361116,044,147 - 116,112,929 (-)NCBINCBI36Build 36hg18NCBI36
Build 341115,954,684 - 116,023,312NCBI
Celera1114,471,445 - 114,540,231 (-)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1114,100,712 - 114,169,492 (-)NCBIHuRef
CHM1_11116,357,421 - 116,426,262 (-)NCBICHM1_1
T2T-CHM13v2.01115,707,724 - 115,776,700 (-)NCBIT2T-CHM13v2.0
Casq2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,993,731 - 102,053,830 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3101,993,731 - 102,053,830 (+)EnsemblGRCm39 Ensembl
GRCm383102,086,415 - 102,146,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3102,086,415 - 102,146,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv373101,890,433 - 101,950,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363102,205,026 - 102,275,310 (+)NCBIMGSCv36mm8
Celera3104,291,185 - 104,350,741 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map344.3NCBI
Casq2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82192,214,556 - 192,270,821 (+)NCBIGRCr8
mRatBN7.22189,526,003 - 189,582,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2189,525,960 - 189,582,267 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2197,154,083 - 197,210,463 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02195,012,238 - 195,067,913 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02189,839,671 - 189,896,025 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02204,512,361 - 204,568,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2204,512,302 - 204,568,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02223,945,611 - 224,001,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,182,938 - 197,239,201 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12197,145,718 - 197,201,199 (+)NCBI
Celera2181,958,395 - 182,014,660 (+)NCBICelera
Cytogenetic Map2q34NCBI
Casq2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543518,941,936 - 18,996,200 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543518,941,975 - 18,996,027 (-)NCBIChiLan1.0ChiLan1.0
CASQ2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21108,347,728 - 108,421,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11107,950,341 - 108,020,647 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0186,795,392 - 86,864,196 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11121,844,494 - 121,913,311 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1121,844,097 - 121,913,311 (+)Ensemblpanpan1.1panPan2
CASQ2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11753,233,966 - 53,299,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1753,224,438 - 53,299,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1752,883,024 - 52,948,138 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01754,114,995 - 54,180,159 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1754,115,013 - 54,180,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11753,153,853 - 53,218,892 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01753,188,593 - 53,253,716 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01753,761,968 - 53,827,341 (-)NCBIUU_Cfam_GSD_1.0
CASQ2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4104,918,221 - 104,984,020 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14104,918,204 - 104,984,019 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24115,007,604 - 115,070,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CASQ2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12017,937,089 - 18,008,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2017,937,524 - 18,008,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603820,654,546 - 20,724,412 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Casq2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477211,456,554 - 11,521,939 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477211,458,994 - 11,521,809 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000015740   ⟹   ENSSTOP00000014091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366271,002,860 - 1,069,206 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000030801   ⟹   ENSSTOP00000024995
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366271,001,678 - 1,069,438 (-)Ensembl
RefSeq Acc Id: XM_005334915   ⟹   XP_005334972
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505813,419,602 - 13,487,289 (+)NCBI
SpeTri2.0NW_0049366271,001,681 - 1,069,377 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014091.3
  ENSSTOP00000024995.1
GenBank Protein KAG3281209 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334972   ⟸   XM_005334915
- UniProtKB: A0A287CUI8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000014091   ⟸   ENSSTOT00000015740
Ensembl Acc Id: ENSSTOP00000024995   ⟸   ENSSTOT00000030801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015738 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015740.3 UniProtKB/TrEMBL
  ENSSTOT00000030801.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Calsequestrin UniProtKB/TrEMBL
  Calsequestrin_C UniProtKB/TrEMBL
  Calsequestrin_CS UniProtKB/TrEMBL
  Calsequestrin_middle_dom UniProtKB/TrEMBL
  Calsequestrin_N UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene Casq2 ENTREZGENE
PANTHER CALSEQUESTRIN UniProtKB/TrEMBL
  CALSEQUESTRIN-2 UniProtKB/TrEMBL
Pfam Calsequestrin UniProtKB/TrEMBL
PRINTS CALSEQUESTRN UniProtKB/TrEMBL
PROSITE CALSEQUESTRIN_1 UniProtKB/TrEMBL
  CALSEQUESTRIN_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A287CUI8 ENTREZGENE, UniProtKB/TrEMBL
  I3MQA2_ICTTR UniProtKB/TrEMBL