Slc31a1 (solute carrier family 31 member 1) - Rat Genome Database

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Gene: Slc31a1 (solute carrier family 31 member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Slc31a1
Name: solute carrier family 31 member 1
RGD ID: 12527377
Description: ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to cisplatin (ortholog); copper ion import (ortholog); copper ion import across plasma membrane (ortholog); PARTICIPATES IN cisplatin drug pathway; cisplatin response pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Congenital Abnormalities (ortholog); Embryo Loss (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: high affinity copper uptake protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,901,798 - 182,934,079 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559331,917 - 364,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559333,461 - 364,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc31a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,901,798 - 182,934,079 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559331,917 - 364,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559333,461 - 364,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC31A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,221,544 - 113,264,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,221,544 - 113,264,492 (+)EnsemblGRCh38hg38GRCh38
GRCh379115,983,824 - 116,026,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,023,689 - 115,066,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 349113,063,421 - 113,106,325NCBI
Celera986,631,426 - 86,674,386 (+)NCBICelera
Cytogenetic Map9q32ENTREZGENE
HuRef985,591,243 - 85,634,236 (+)NCBIHuRef
CHM1_19116,130,594 - 116,173,508 (+)NCBICHM1_1
T2T-CHM13v2.09125,420,370 - 125,463,332 (+)NCBIT2T-CHM13v2.0
Slc31a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,278,821 - 62,310,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,278,964 - 62,310,006 (+)EnsemblGRCm39 Ensembl
GRCm38462,360,583 - 62,391,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,360,727 - 62,391,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv37462,021,735 - 62,052,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,847,110 - 61,878,123 (+)NCBIMGSCv36mm8
Celera461,032,896 - 61,063,964 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.11NCBI
Slc31a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,830,574 - 80,859,810 (+)NCBIGRCr8
mRatBN7.2575,814,744 - 75,844,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,814,743 - 75,844,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,214,842 - 78,241,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,031,936 - 80,058,869 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,007,446 - 80,034,378 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,222,504 - 78,249,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,222,504 - 78,249,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,341,969 - 82,371,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,359,420 - 79,385,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,364,532 - 79,391,101 (+)NCBI
Celera574,756,941 - 74,783,647 (+)NCBICelera
Cytogenetic Map5q24NCBI
Slc31a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,220,495 - 14,264,699 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,221,258 - 14,264,288 (-)NCBIChiLan1.0ChiLan1.0
SLC31A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,113,476 - 26,156,513 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,115,835 - 26,158,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,319,304 - 84,362,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,691,503 - 112,734,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,691,503 - 112,734,352 (+)Ensemblpanpan1.1panPan2
SLC31A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,590,087 - 67,628,947 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,591,080 - 67,625,798 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,994,878 - 66,033,741 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,714,951 - 68,753,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,715,210 - 68,812,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,232,618 - 67,271,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,254,684 - 67,293,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,000,439 - 68,039,329 (+)NCBIUU_Cfam_GSD_1.0
SLC31A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,868,332 - 253,894,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,868,389 - 253,893,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,727,786 - 284,753,055 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q28-q2.13NCBI
SLC31A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,307,308 - 26,348,701 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,311,334 - 26,348,694 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,453,718 - 16,495,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc31a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,832,908 - 21,849,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,832,924 - 21,879,089 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000000563   ⟹   ENSSTOP00000000509
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936559331,917 - 364,852 (-)Ensembl
RefSeq Acc Id: XM_005329692   ⟹   XP_005329749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947182,901,798 - 182,934,079 (+)NCBI
SpeTri2.0NW_004936559333,461 - 364,737 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329749 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000509.2
GenBank Protein KAG3287751 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005329749   ⟸   XM_005329692
- UniProtKB: I3LWX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000509   ⟸   ENSSTOT00000000563


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000566 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000563.3 UniProtKB/TrEMBL
InterPro Cop_transporter UniProtKB/TrEMBL
NCBI Gene Slc31a1 ENTREZGENE
PANTHER HIGH AFFINITY COPPER UPTAKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR12483 UniProtKB/TrEMBL
Pfam Ctr UniProtKB/TrEMBL
UniProt I3LWX1 ENTREZGENE, UniProtKB/TrEMBL