SLC31A1 (solute carrier family 31 member 1) - Rat Genome Database

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Gene: SLC31A1 (solute carrier family 31 member 1) Pan paniscus
Analyze
Symbol: SLC31A1
Name: solute carrier family 31 member 1
RGD ID: 11960538
Description: ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); xenobiotic transmembrane transporter activity (ortholog); INVOLVED IN cellular response to cisplatin (ortholog); copper ion import (ortholog); copper ion import across plasma membrane (ortholog); PARTICIPATES IN cisplatin drug pathway; cisplatin response pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Congenital Abnormalities (ortholog); Embryo Loss (ortholog); FOUND IN intercalated disc (ortholog); late endosome (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: high affinity copper uptake protein 1; solute carrier family 31 (copper transporters), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,113,476 - 26,156,513 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,115,835 - 26,158,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,319,304 - 84,362,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,691,503 - 112,734,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,691,503 - 112,734,352 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC31A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,113,476 - 26,156,513 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,115,835 - 26,158,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,319,304 - 84,362,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,691,503 - 112,734,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,691,503 - 112,734,352 (+)Ensemblpanpan1.1panPan2
SLC31A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,221,544 - 113,264,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,221,544 - 113,264,492 (+)EnsemblGRCh38hg38GRCh38
GRCh379115,983,824 - 116,026,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,023,689 - 115,066,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 349113,063,421 - 113,106,325NCBI
Celera986,631,426 - 86,674,386 (+)NCBICelera
Cytogenetic Map9q32ENTREZGENE
HuRef985,591,243 - 85,634,236 (+)NCBIHuRef
CHM1_19116,130,594 - 116,173,508 (+)NCBICHM1_1
T2T-CHM13v2.09125,420,370 - 125,463,332 (+)NCBIT2T-CHM13v2.0
Slc31a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,278,821 - 62,310,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,278,964 - 62,310,006 (+)EnsemblGRCm39 Ensembl
GRCm38462,360,583 - 62,391,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,360,727 - 62,391,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv37462,021,735 - 62,052,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,847,110 - 61,878,123 (+)NCBIMGSCv36mm8
Celera461,032,896 - 61,063,964 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.11NCBI
Slc31a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,830,574 - 80,859,810 (+)NCBIGRCr8
mRatBN7.2575,814,744 - 75,844,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,814,743 - 75,844,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,214,842 - 78,241,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,031,936 - 80,058,869 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,007,446 - 80,034,378 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,222,504 - 78,249,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,222,504 - 78,249,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,341,969 - 82,371,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,359,420 - 79,385,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,364,532 - 79,391,101 (+)NCBI
Celera574,756,941 - 74,783,647 (+)NCBICelera
Cytogenetic Map5q24NCBI
Slc31a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,220,495 - 14,264,699 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,221,258 - 14,264,288 (-)NCBIChiLan1.0ChiLan1.0
SLC31A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,590,087 - 67,628,947 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,591,080 - 67,625,798 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,994,878 - 66,033,741 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,714,951 - 68,753,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,715,210 - 68,812,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,232,618 - 67,271,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,254,684 - 67,293,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,000,439 - 68,039,329 (+)NCBIUU_Cfam_GSD_1.0
Slc31a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,901,798 - 182,934,079 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559331,917 - 364,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559333,461 - 364,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC31A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,868,332 - 253,894,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,868,389 - 253,893,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,727,786 - 284,753,055 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q28-q2.13NCBI
SLC31A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,307,308 - 26,348,701 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,311,334 - 26,348,694 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,453,718 - 16,495,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc31a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,832,908 - 21,849,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,832,924 - 21,879,089 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000044673   ⟹   ENSPPAP00000021869
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9112,691,503 - 112,734,352 (+)Ensembl
RefSeq Acc Id: XM_003833052   ⟹   XP_003833100
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21126,113,476 - 26,156,513 (-)NCBI
NHGRI_mPanPan1926,115,835 - 26,158,851 (-)NCBI
Mhudiblu_PPA_v0984,319,304 - 84,362,288 (+)NCBI
PanPan1.19112,691,503 - 112,734,352 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003833100 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021869
  ENSPPAP00000021869.1
RefSeq Acc Id: XP_003833100   ⟸   XM_003833052
- UniProtKB: A0A2R9AXC9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000021869   ⟸   ENSPPAT00000044673


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044673.1 UniProtKB/TrEMBL
InterPro Cop_transporter UniProtKB/TrEMBL
KEGG Report pps:100994946 UniProtKB/TrEMBL
NCBI Gene SLC31A1 ENTREZGENE
PANTHER HIGH AFFINITY COPPER UPTAKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR12483 UniProtKB/TrEMBL
Pfam Ctr UniProtKB/TrEMBL
UniProt A0A2R9AXC9 ENTREZGENE, UniProtKB/TrEMBL