Symbol: |
Txnl4a |
Name: |
thioredoxin like 4A |
RGD ID: |
12518652 |
Description: |
INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
thioredoxin like 4A, transcript variant X1; thioredoxin-like protein 4A |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Txnl4a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TXNL4A (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 18 | 79,970,813 - 80,033,936 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 18 | 79,970,813 - 80,033,949 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 18 | 77,730,813 - 77,793,936 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 18 | 75,833,855 - 75,849,520 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 18 | 75,833,855 - 75,849,520 | NCBI | | | | | Celera | 18 | 74,505,339 - 74,521,004 (-) | NCBI | | Celera | | | Cytogenetic Map | 18 | q23 | NCBI | | | | | HuRef | 18 | 74,354,321 - 74,369,986 (-) | NCBI | | HuRef | | | CHM1_1 | 18 | 77,728,173 - 77,743,835 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 18 | 80,247,334 - 80,310,473 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Txnl4a (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 18 | 80,250,041 - 80,269,066 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 18 | 80,249,980 - 80,255,956 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm39 Ensembl | 18 | 80,250,010 - 80,269,070 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 18 | 80,206,826 - 80,225,851 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 18 | 80,206,795 - 80,225,855 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | GRCm38.p6 Ensembl | 18 | 80,206,765 - 80,212,741 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 18 | 80,403,537 - 80,422,590 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 18 | 80,368,858 - 80,387,910 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 18 | 81,326,193 - 81,346,625 (+) | NCBI | | Celera | | | Cytogenetic Map | 18 | E3 | NCBI | | | | | cM Map | 18 | 53.34 | NCBI | | | | |
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Txnl4a (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 18 | 75,934,085 - 75,949,873 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 18 | 73,659,107 - 73,674,893 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 18 | 73,659,107 - 73,674,893 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 18 | 75,760,800 - 75,776,460 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 18 | 76,430,148 - 76,445,808 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 18 | 74,275,535 - 74,291,375 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 18 | 76,725,221 - 76,740,673 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 18 | 76,725,247 - 76,740,688 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 18 | 72,067,372 - 72,082,799 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 18 | 72,321,825 - 72,336,942 (+) | NCBI | | Celera | | | Cytogenetic Map | 18 | q12.3 | NCBI | | | | |
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Txnl4a (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955402 | 63,153,052 - 63,166,199 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955402 | 63,153,274 - 63,166,208 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TXNL4A (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 17 | 97,606,821 - 97,670,745 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 18 | 83,302,072 - 83,363,366 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 18 | 73,618,302 - 73,679,603 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 18 | 76,937,460 - 76,952,428 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 18 | 76,937,460 - 76,952,428 (-) | Ensembl | panpan1.1 | | panPan2 | |
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TXNL4A (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 722,223 - 735,253 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 722,293 - 735,258 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 1,724,232 - 1,737,274 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 520,112 - 533,019 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 520,550 - 533,021 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 573,166 - 586,068 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 518,510 - 531,414 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 689,716 - 702,621 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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TXNL4A (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 127,974,543 - 127,991,177 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 127,975,164 - 127,991,112 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 310,124,483 - 310,140,432 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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TXNL4A (Chlorocebus sabaeus - green monkey) |
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Txnl4a (Heterocephalus glaber - naked mole-rat) |
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Ensembl Acc Id: |
ENSSTOT00000023844 ⟹ ENSSTOP00000022461 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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SpeTri2.0 Ensembl | NW_004936616 | 220,274 - 234,870 (+) | Ensembl |
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RefSeq Acc Id: |
XM_005334364 ⟹ XP_005334421 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404944 | 14,899,459 - 14,912,032 (+) | NCBI | SpeTri2.0 | NW_004936616 | 220,256 - 232,042 (+) | NCBI |
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Sequence: |
CGTAGGCGTCAGAGCGTGATTCCGGAAGTGCCCCTGCGCGGGAGGCGCTAGTGCGGCCGGGAGGTGCGGGCCGGTCGAGACCCGGAGACCGAGGGCAAGGCAGCTCGCGCGGCGCCCTGCCGCATAGC CCGGCCACGCCAGCATGTCGTACATGCTCCCTCACCTGCACAACGGCTGGCAGGTGGACCAGGCCATCCTCTCGGAGGAGGACCGCGTCGTGGTCATTCGTTTCGGGCACGACTGGGACCCCACCTGC ATGAAGATGGACGAGGTGCTGTACAGCATAGCGGAGAAGGTAAAAAATTTTGCAGTTATTTATCTCGTGGATATTACAGAAGTACCTGACTTCAACAAAATGTATGAATTATACGATCCATGTACTGT CATGTTTTTCTTCAGGAACAAACACATCATGATTGACTTGGGCACAGGCAACAACAACAAGATCAACTGGGCCATGGAAGATAAGCAGGAGATGGTTGACATAATTGAGACTGTATACCGTGGCGCCC GGAAGGGCCGGGGCCTGGTGGTGTCCCCCAAGGACTACTCGACCAAGTACAGATACTGAGGCGCGTGCCAGGGCCTGCATGGTGCCATGGGGCCCTTCCCTGGACTTGTCCTGGTCTGTTGAGAACTG GAGGGCTAAAGGTCACACACCTTCACTAGCTGAAGCAAATAAACACCTGAAGGATCACCCACCACTGTTTGTTCTTAAGAACCTGTGTAGCTGA
hide sequence
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RefSeq Acc Id: |
XM_040271735 ⟹ XP_040127669 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404944 | 14,899,483 - 14,912,032 (+) | NCBI |
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RefSeq Acc Id: |
XM_040271742 ⟹ XP_040127676 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404944 | 14,899,637 - 14,912,032 (+) | NCBI |
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RefSeq Acc Id: |
XP_005334421 ⟸ XM_005334364 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
I3NDL4 (UniProtKB/TrEMBL) |
- Sequence: |
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRG LVVSPKDYSTKYRY
hide sequence
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RefSeq Acc Id: |
XP_040127669 ⟸ XM_040271735 |
- Peptide Label: |
isoform X2 |
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RefSeq Acc Id: |
XP_040127676 ⟸ XM_040271742 |
- Peptide Label: |
isoform X2 |
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Ensembl Acc Id: |
ENSSTOP00000022461 ⟸ ENSSTOT00000023844 |
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