Symbol:
Tpcn1
Name:
two pore segment channel 1
RGD ID:
12514331
Description:
ENCODES a protein that exhibits NAADP-sensitive calcium-release channel activity (ortholog); INVOLVED IN calcium-mediated signaling (inferred); endocytosis involved in viral entry into host cell (inferred); monoatomic ion transport (inferred); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH oligospermia (ortholog); FOUND IN early endosome membrane (inferred); endolysosome (inferred); endosome membrane (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
two pore calcium channel protein 1; two pore segment channel 1, transcript variant X1; two pore segment channel 1, transcript variant X2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 148,612,146 - 148,663,274 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936668 3,111,002 - 3,163,396 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936668 3,111,038 - 3,162,163 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Tpcn1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 148,612,146 - 148,663,274 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936668 3,111,002 - 3,163,396 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936668 3,111,038 - 3,162,163 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
TPCN1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 12 113,221,464 - 113,298,585 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 12 113,221,050 - 113,298,585 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 12 113,659,269 - 113,736,390 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 12 112,143,652 - 112,218,317 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 12 112,121,988 - 112,196,653 NCBI Celera 12 113,286,083 - 113,363,215 (+) NCBI Celera Cytogenetic Map 12 q24.13 NCBI HuRef 12 110,671,978 - 110,748,859 (+) NCBI HuRef CHM1_1 12 113,627,519 - 113,704,638 (+) NCBI CHM1_1 T2T-CHM13v2.0 12 113,198,077 - 113,275,213 (+) NCBI T2T-CHM13v2.0
Tpcn1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 120,672,222 - 120,726,731 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 120,672,218 - 120,726,738 (-) Ensembl GRCm39 Ensembl GRCm38 5 120,534,157 - 120,588,678 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 120,534,153 - 120,588,673 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 120,984,166 - 121,038,622 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 120,794,774 - 120,849,230 (-) NCBI MGSCv36 mm8 Celera 5 117,618,746 - 117,673,755 (-) NCBI Celera Cytogenetic Map 5 F NCBI cM Map 5 60.63 NCBI
Tpcn1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 41,633,399 - 41,690,200 (+) NCBI GRCr8 mRatBN7.2 12 35,972,813 - 36,029,632 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 35,972,846 - 36,029,626 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 12 37,152,476 - 37,208,823 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 12 37,763,694 - 37,820,042 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 12 36,816,157 - 36,872,506 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 12 41,507,784 - 41,566,847 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 41,543,696 - 41,566,847 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 43,365,885 - 43,421,373 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 12 37,140,428 - 37,227,711 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 12 37,003,822 - 37,091,098 (+) NCBI Celera 12 37,634,250 - 37,689,810 (+) NCBI Celera Cytogenetic Map 12 q16 NCBI
Tpcn1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955482 9,542,079 - 9,592,972 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955482 9,538,572 - 9,594,739 (+) NCBI ChiLan1.0 ChiLan1.0
TPCN1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 10 121,275,876 - 121,387,131 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 12 121,292,962 - 121,383,532 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 12 110,812,587 - 110,903,033 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 12 114,209,638 - 114,286,443 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 12 114,209,638 - 114,286,443 (+) Ensembl panpan1.1 panPan2
TPCN1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 26 10,599,898 - 10,662,269 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 26 10,599,780 - 10,660,767 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 26 10,722,333 - 10,784,680 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 26 10,844,354 - 10,906,738 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 26 10,844,324 - 10,906,732 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 26 10,818,283 - 10,880,655 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 26 10,880,824 - 10,943,296 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 26 10,930,100 - 10,992,447 (+) NCBI UU_Cfam_GSD_1.0
TPCN1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 38,683,597 - 38,773,186 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 38,698,680 - 38,773,189 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 41,288,818 - 41,314,324 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
TPCN1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 11 108,459,754 - 108,549,933 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 11 108,475,380 - 108,552,374 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666037 136,539,692 - 136,615,663 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Tpcn1
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000001991 ⟹ ENSSTOP00000001773
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936668 3,111,002 - 3,163,396 (+) Ensembl
RefSeq Acc Id:
XM_013363566 ⟹ XP_013219020
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 148,612,146 - 148,663,274 (+) NCBI SpeTri2.0 NW_004936668 3,111,038 - 3,162,163 (+) NCBI
Sequence:
GGCGGATCGGAGAGCTGGCGCAGCTGCTGTGGTGGCAGCAGCTCAAGTGGCGGTGGCGGTGGCGGCTGCAACAGCTCTGGACTTAGGGCTTTGGTGGCGGCGCCGGCGGGCGGCTGAGCTGCGCGGTG
hide sequence
RefSeq Acc Id:
XM_021734261 ⟹ XP_021589936
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 148,612,146 - 148,663,274 (+) NCBI SpeTri2.0 NW_004936668 3,111,046 - 3,162,163 (+) NCBI
Sequence:
GGAGAGCTGGCGCAGCTGCTGTGGTGGCAGCAGCTCAAGTGGCGGTGGCGGTGGCGGCTGCAACAGCTCTGGACTTAGGGCTTTGGTGGCGGCGCCGGCGGGCGGCTGAGCTGCGCGGTGCAGACGCC
hide sequence
RefSeq Acc Id:
XM_040289442 ⟹ XP_040145376
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 148,633,216 - 148,663,274 (+) NCBI
RefSeq Acc Id:
XP_013219020 ⟸ XM_013363566
- Peptide Label:
isoform X1
- UniProtKB:
I3LZK2 (UniProtKB/TrEMBL)
- Sequence:
MAVSLDDDVPLILTLDEGGSAPLAPSNGLGQEELPSKNGGSHAAHGSRAPNLVSGGESPPSSPSSHNWEMNYQEAAIYLQEGENNDKFFTHPKDARALGAYLFVHNHLFYLMELLTALLLLLLSLCEA
hide sequence
RefSeq Acc Id:
XP_021589936 ⟸ XM_021734261
- Peptide Label:
isoform X1
- UniProtKB:
I3LZK2 (UniProtKB/TrEMBL)
- Sequence:
MAVSLDDDVPLILTLDEGGSAPLAPSNGLGQEELPSKNGGSHAAHGSRAPNLVSGGESPPSSPS
hide sequence
RefSeq Acc Id:
XP_040145376 ⟸ XM_040289442
- Peptide Label:
isoform X2
Ensembl Acc Id:
ENSSTOP00000001773 ⟸ ENSSTOT00000001991
