Pak4 (p21 (RAC1) activated kinase 4) - Rat Genome Database

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Gene: Pak4 (p21 (RAC1) activated kinase 4) Ictidomys tridecemlineatus
Analyze
Symbol: Pak4
Name: p21 (RAC1) activated kinase 4
RGD ID: 12494398
Description: ENCODES a protein that exhibits ATP binding (inferred); protein kinase activity (inferred); protein serine/threonine kinase activity (inferred); INVOLVED IN cellular response to organic cyclic compound (ortholog); dendritic spine development (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase PAK 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,584,379 - 13,620,454 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366612,012,439 - 2,048,523 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pak4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,584,379 - 13,620,454 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366612,012,439 - 2,048,523 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,125,786 - 39,182,816 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,125,770 - 39,182,816 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,616,426 - 39,673,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,308,260 - 44,361,886 (+)NCBINCBI36Build 36hg18NCBI36
Build 341944,308,301 - 44,361,882NCBI
Celera1936,418,829 - 36,473,610 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,063,360 - 36,116,946 (+)NCBIHuRef
CHM1_11939,617,306 - 39,670,871 (+)NCBICHM1_1
T2T-CHM13v2.01941,929,765 - 41,986,971 (+)NCBIT2T-CHM13v2.0
Pak4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,258,244 - 28,297,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,258,244 - 28,297,610 (-)EnsemblGRCm39 Ensembl
GRCm38728,558,819 - 28,598,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,558,819 - 28,598,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,343,838 - 29,383,203 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,267,579 - 28,306,906 (-)NCBIMGSCv36mm8
Celera723,123,936 - 23,163,272 (-)NCBICelera
Cytogenetic Map7A3- B1NCBI
cM Map716.84NCBI
Pak4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,977,437 - 93,016,721 (-)NCBIGRCr8
mRatBN7.2183,849,904 - 83,889,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,849,904 - 83,859,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,259,841 - 89,299,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,718,978 - 97,758,274 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,015,714 - 91,055,110 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,162,462 - 85,201,746 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,162,452 - 85,201,757 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,378,296 - 86,417,580 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,670,786 - 83,710,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,749,728 - 83,797,056 (-)NCBI
Celera178,244,198 - 78,283,501 (-)NCBICelera
Cytogenetic Map1q21NCBI
Pak4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468367,971 - 378,271 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468368,721 - 417,614 (-)NCBIChiLan1.0ChiLan1.0
PAK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,421,628 - 45,475,524 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,292,159 - 47,346,128 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,224,442 - 36,278,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,773,098 - 44,826,651 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,816,601 - 44,825,827 (+)Ensemblpanpan1.1panPan2
PAK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,009,573 - 114,052,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,009,711 - 114,018,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,410,153 - 113,453,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,608,125 - 114,651,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,608,128 - 114,651,260 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,166,259 - 114,201,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,799,180 - 113,842,525 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,794,554 - 114,837,946 (-)NCBIUU_Cfam_GSD_1.0
PAK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,869,577 - 47,914,182 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1647,869,604 - 47,914,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,357,961 - 43,402,756 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PAK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,715,695 - 33,769,272 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,759,462 - 33,770,497 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,743,338 - 11,796,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pak4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,457,010 - 12,499,366 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,457,029 - 12,498,839 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021734021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021734021   ⟹   XP_021589696
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934913,584,379 - 13,620,454 (+)NCBI
SpeTri2.0NW_0049366612,012,439 - 2,048,523 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021589696 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020612.2
GenBank Protein KAG3256008 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021589696   ⟸   XM_021734021
- Sequence:
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028802 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024111.2 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  STE20_Ser/Thr_kinase UniProtKB/TrEMBL
NCBI Gene Pak4 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE PAK 4 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE TAO UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PIRSF Integrin-linked_kinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt I3N8B6_ICTTR UniProtKB/TrEMBL