Lamb1 (laminin subunit beta 1) - Rat Genome Database

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Gene: Lamb1 (laminin subunit beta 1) Ictidomys tridecemlineatus
Analyze
Symbol: Lamb1
Name: laminin subunit beta 1
RGD ID: 12490444
Description: ENCODES a protein that exhibits enzyme binding (ortholog); glycosphingolipid binding (ortholog); INVOLVED IN cell migration (ortholog); embryo implantation (ortholog); negative regulation of cell adhesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Classical Lissencephalies and Subcortical Band Heterotopias (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: laminin subunit beta 1, transcript variant X1; laminin subunit beta 1, transcript variant X2; laminin subunit beta 1, transcript variant X3; laminin subunit beta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,053,363 - 55,121,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,177,158 - 16,247,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,177,200 - 16,245,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lamb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,053,363 - 55,121,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,177,158 - 16,247,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,177,200 - 16,245,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,923,799 - 108,003,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,923,799 - 108,003,213 (-)EnsemblGRCh38hg38GRCh38
GRCh377107,564,244 - 107,643,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,351,499 - 107,431,040 (-)NCBINCBI36Build 36hg18NCBI36
Build 347107,158,213 - 107,237,755NCBI
Celera7102,371,233 - 102,450,770 (-)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7101,926,690 - 102,006,298 (-)NCBIHuRef
CHM1_17107,497,967 - 107,577,516 (-)NCBICHM1_1
T2T-CHM13v2.07109,241,996 - 109,321,407 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,925,375 - 107,004,933 (-)NCBI
Lamb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,315,230 - 31,379,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,315,233 - 31,379,643 (+)EnsemblGRCm39 Ensembl
GRCm381231,265,146 - 31,329,644 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,265,234 - 31,329,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv371231,950,159 - 32,014,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361231,851,443 - 31,915,700 (+)NCBIMGSCv36mm8
Celera1232,713,386 - 32,777,732 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.39NCBI
Lamb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,562,849 - 53,630,118 (+)NCBIGRCr8
mRatBN7.2647,835,492 - 47,902,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,835,525 - 47,902,585 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0650,528,796 - 50,596,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,528,823 - 50,596,079 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,204,031 - 59,271,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,115,671 - 49,183,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,109,263 - 49,186,072 (+)NCBI
Celera647,038,296 - 47,105,077 (+)NCBICelera
Cytogenetic Map6q16NCBI
Lamb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,241,235 - 12,305,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,241,235 - 12,305,433 (-)NCBIChiLan1.0ChiLan1.0
LAMB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,769,878 - 144,849,511 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,039,847 - 193,120,895 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,905,761 - 99,985,233 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,627,488 - 112,706,554 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,627,488 - 112,706,554 (-)Ensemblpanpan1.1panPan2
LAMB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,634,640 - 12,700,311 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,630,554 - 12,700,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,273,909 - 12,344,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,901,205 - 12,971,843 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,886,065 - 13,160,390 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,719,649 - 12,788,770 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,639,931 - 12,709,079 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,866,134 - 12,936,827 (+)NCBIUU_Cfam_GSD_1.0
LAMB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,671,152 - 107,772,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,670,120 - 107,747,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,440,049 - 118,515,695 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,829,287 - 76,914,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,829,443 - 76,914,324 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604226,949,313 - 27,034,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473921,771,226 - 21,843,884 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473921,771,617 - 21,843,888 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000007502   ⟹   ENSSTOP00000006704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647916,177,158 - 16,245,106 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032690   ⟹   ENSSTOP00000024024
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647916,177,158 - 16,247,165 (+)Ensembl
RefSeq Acc Id: XM_005319439   ⟹   XP_005319496
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511855,053,363 - 55,121,513 (+)NCBI
SpeTri2.0NW_00493647916,177,200 - 16,245,268 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319496 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006704.3
  ENSSTOP00000024024.1
GenBank Protein KAG3277787 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277788 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277789 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319496   ⟸   XM_005319439
- UniProtKB: I3M9V5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000006704   ⟸   ENSSTOT00000007502
Ensembl Acc Id: ENSSTOP00000024024   ⟸   ENSSTOT00000032690

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007474 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007502.3 UniProtKB/TrEMBL
  ENSSTOT00000032690.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin/Netrin_ECM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV_B UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
NCBI Gene Lamb1 ENTREZGENE
PANTHER LAMININ SUBUNIT BETA-1 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  LAMININ_IV_B UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_IVB UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt I3M9V5 ENTREZGENE, UniProtKB/TrEMBL