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Gene: Lamb1 (laminin subunit beta 1) Ictidomys tridecemlineatus

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Symbol:

Lamb1

Name:

laminin subunit beta 1

RGD ID:

12490444

Description:

ENCODES a protein that exhibits enzyme binding (inferred); extracellular matrix structural constituent (inferred); glycosphingolipid binding (inferred); INVOLVED IN animal organ morphogenesis (inferred); axon guidance (inferred); basement membrane assembly (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Classical Lissencephalies and Subcortical Band Heterotopias (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

laminin subunit beta 1, transcript variant X1; laminin subunit beta 1, transcript variant X2; laminin subunit beta 1, transcript variant X3; laminin subunit beta-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LAMB1 (laminin subunit beta 1)	NCBI	Ortholog
Mus musculus (house mouse):	Lamb1 (laminin B1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lamb1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lamb1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LAMB1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LAMB1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LAMB1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LAMB1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lamb1 (laminin subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	55,053,363 - 55,121,513 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	16,177,158 - 16,247,165 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	16,177,200 - 16,245,268 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	autistic disorder		ISO	RGD:1314859	9068941		RGD	PMID:15523497\|REF_RGD_ID:1624317

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	autism spectrum disorder		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:30504930
Lamb1	Squirrel	Classical Lissencephalies and Subcortical Band Heterotopias		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Classic lissencephaly	ClinVar
Lamb1	Squirrel	genetic disease		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868\|PMID:28492532
Lamb1	Squirrel	intellectual disability		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:25741868
Lamb1	Squirrel	Leigh disease		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Leigh syndrome	ClinVar	PMID:25741868\|PMID:28492532
Lamb1	Squirrel	lissencephaly 1		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Classic lissencephaly	ClinVar
Lamb1	Squirrel	lissencephaly 5		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: LAMB1-related condition \| ClinVar Annotator: match by term: Lissencephaly 5	ClinVar	PMID:16199547\|PMID:17576681\|PMID:23472759\|PMID:25326635\|PMID:25741868\|PMID:25925986\|PMID:28492532\|PMID:9536098
Lamb1	Squirrel	lissencephaly 5		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: LAMB1-related condition \| ClinVar Annotator: match by term: Lissencephaly 5	ClinVar	PMID:16199547\|PMID:23472759\|PMID:25326635\|PMID:25741868\|PMID:25925986\|PMID:28492532
Lamb1	Squirrel	maple syrup urine disease		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Maple syrup urine disease	ClinVar	PMID:25741868\|PMID:28492532
Lamb1	Squirrel	multiple sclerosis		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Multiple sclerosis	ClinVar	PMID:25741868\|PMID:28492532
Lamb1	Squirrel	pleomorphic xanthoastrocytoma		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358
Lamb1	Squirrel	pyruvate decarboxylase deficiency		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Pyruvate dehydrogenase complex deficiency	ClinVar	PMID:25741868\|PMID:28492532
Lamb1	Squirrel	Subacute Necrotizing Encephalopathy of Leigh, Infantile		ISO	RGD:1314859	8554872	ClinVar Annotator: match by term: Leigh's necrotizing encephalopathy	ClinVar	PMID:25741868\|PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	autistic disorder		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15523497
Lamb1	Squirrel	coloboma		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18809619
Lamb1	Squirrel	endometriosis		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:21063030
Lamb1	Squirrel	lissencephaly		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD
Lamb1	Squirrel	pulmonary fibrosis		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:28444932
Lamb1	Squirrel	ulcerative colitis		ISO	RGD:1314859	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:19915572

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	lissencephaly 5		ISO	RGD:1314859	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	animal organ morphogenesis	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	axon guidance	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	basement membrane assembly	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	cell adhesion	involved_in	IEA	UniProtKB-KW:KW-0130	150520179		UniProt	GO_REF:0000043
Lamb1	Squirrel	cell migration	acts_upstream_of_or_within	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	cell migration	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	embryo implantation	acts_upstream_of_or_within	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	endodermal cell differentiation	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	negative regulation of cell adhesion	involved_in	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	neuron projection development	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	neuron projection development	acts_upstream_of_or_within	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	neuronal-glial interaction involved in cerebral cortex radial glia guided migration	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	odontogenesis	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	positive regulation of cell migration	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	substrate adhesion-dependent cell spreading	involved_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	substrate adhesion-dependent cell spreading	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	tissue development	involved_in	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	basement membrane	located_in	IEA	UniProtKB:P02469\|UniProtKB:P07942\|ensembl:ENSMUSP00000132778\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	basement membrane	located_in	IEA	UniProtKB-KW:KW-0084	150520179		UniProt	GO_REF:0000043
Lamb1	Squirrel	basement membrane	located_in	IEA	UniProtKB-SubCell:SL-0025	150520179		UniProt	GO_REF:0000044
Lamb1	Squirrel	collagen-containing extracellular matrix		ISO	RGD:1306311	9068941		RGD	PMID:15928048\|REF_RGD_ID:1624263
Lamb1	Squirrel	extracellular matrix	located_in	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	extracellular region	located_in	IEA	UniProtKB-KW:KW-0964	150520179		UniProt	GO_REF:0000043
Lamb1	Squirrel	extracellular space	located_in	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	laminin complex	part_of	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	laminin complex	part_of	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	laminin-1 complex	part_of	IEA	UniProtKB:P02469\|UniProtKB:P07942\|ensembl:ENSMUSP00000132778\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	laminin-10 complex	part_of	IEA	UniProtKB:P02469\|UniProtKB:P07942\|ensembl:ENSMUSP00000132778\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	laminin-2 complex	part_of	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	laminin-8 complex	part_of	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	nucleus	located_in	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	perinuclear region of cytoplasm	located_in	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lamb1	Squirrel	enzyme binding	enables	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	extracellular matrix structural constituent	enables	IEA	UniProtKB:P07942\|ensembl:ENSP00000222399	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	glycosphingolipid binding	enables	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	integrin binding	enables	IEA	UniProtKB:P02469\|ensembl:ENSMUSP00000132778	150520179		Ensembl	GO_REF:0000107
Lamb1	Squirrel	integrin binding	enables	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:P02468	9068941	PMID:21311558	IntAct	PMID:21311558
Lamb1	Squirrel	protein binding	enables	ISO	PR:P02468\|PR:Q61001	9068941	PMID:12743034	MGI	PMID:12743034
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:P09055	9068941	PMID:34427057	UniProt	PMID:34427057
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:P11912\|UniProtKB:Q8TDT2\|UniProtKB:Q9UMX0	9068941	PMID:32296183	IntAct	PMID:32296183
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:C5MBE7	9068941	PMID:26438063	IntAct	PMID:26438063
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:P17301	9068941	PMID:7639691	UniProt	PMID:7639691
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:P31696	9068941	PMID:9151673	IntAct	PMID:9151673
Lamb1	Squirrel	protein binding	enables	ISO	UniProtKB:Q8IW75	9068941	PMID:28514442, PMID:33961781	IntAct	PMID:28514442\|PMID:33961781
Lamb1	Squirrel	structural constituent of synapse-associated extracellular matrix	enables	IEA	PANTHER:PTN000742527	150520179		TreeGrafter	GO_REF:0000118

PMID:30032202

Lamb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	55,053,363 - 55,121,513 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	16,177,158 - 16,247,165 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	16,177,200 - 16,245,268 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LAMB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	107,923,799 - 108,003,161 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	107,923,799 - 108,003,213 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	107,564,244 - 107,643,606 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	107,351,499 - 107,431,040 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	107,158,213 - 107,237,755	NCBI
Celera	7	102,371,233 - 102,450,770 (-)	NCBI		Celera
Cytogenetic Map	7	q31.1	NCBI
HuRef	7	101,926,690 - 102,006,298 (-)	NCBI		HuRef
CHM1_1	7	107,497,967 - 107,577,516 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	109,241,996 - 109,321,407 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	106,925,375 - 107,004,933 (-)	NCBI

Lamb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	31,315,230 - 31,379,643 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	31,315,233 - 31,379,643 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	31,265,146 - 31,329,644 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	31,265,234 - 31,329,644 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	31,950,159 - 32,014,504 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	31,851,443 - 31,915,700 (+)	NCBI		MGSCv36	mm8
Celera	12	32,713,386 - 32,777,732 (+)	NCBI		Celera
Cytogenetic Map	12	A2	NCBI
cM Map	12	13.39	NCBI

Lamb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	53,562,849 - 53,630,118 (+)	NCBI		GRCr8
mRatBN7.2	6	47,835,492 - 47,902,585 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	47,835,525 - 47,902,585 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	50,528,796 - 50,596,593 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	50,528,823 - 50,596,079 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	59,204,031 - 59,271,336 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	49,115,671 - 49,183,374 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	49,109,263 - 49,186,072 (+)	NCBI
Celera	6	47,038,296 - 47,105,077 (+)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI

Lamb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	12,241,235 - 12,305,433 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	12,241,235 - 12,305,433 (-)	NCBI	ChiLan1.0	ChiLan1.0

LAMB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	144,769,878 - 144,849,511 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	193,039,847 - 193,120,895 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	99,905,761 - 99,985,233 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	112,627,488 - 112,706,554 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	112,627,488 - 112,706,554 (-)	Ensembl	panpan1.1		panPan2

LAMB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	12,634,640 - 12,700,311 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	12,630,554 - 12,700,308 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	12,273,909 - 12,344,544 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	12,901,205 - 12,971,843 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	12,886,065 - 13,160,390 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	12,719,649 - 12,788,770 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	12,639,931 - 12,709,079 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	12,866,134 - 12,936,827 (+)	NCBI		UU_Cfam_GSD_1.0

LAMB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	107,671,152 - 107,772,269 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	107,670,120 - 107,747,242 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	118,440,049 - 118,515,695 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LAMB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	76,829,287 - 76,914,348 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	76,829,443 - 76,914,324 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	26,949,313 - 27,034,081 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lamb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	21,771,226 - 21,843,884 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	21,771,617 - 21,843,888 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005319439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000007502 ⟹ ENSSTOP00000006704

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936479	16,177,158 - 16,245,106 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032690 ⟹ ENSSTOP00000024024

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936479	16,177,158 - 16,247,165 (+)	Ensembl

RefSeq Acc Id:

XM_005319439 ⟹ XP_005319496

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	55,053,363 - 55,121,513 (+)	NCBI
SpeTri2.0	NW_004936479	16,177,200 - 16,245,268 (+)	NCBI

Sequence:

show sequence

CTCCCTGGGTTCCTCCCAAGGCTAAACTTTCTAATTCCCTTCTTTGGGCTCGGGGGCTGCCAGGACCGGCAGGAACGCTCGCACAGTGGGAAACGAAGACGCGAAGAAGAAAAGGCAGGCAGTTTGGC
TGGGGTGTTTCCCTTCCTCGGCGGTGTCCCCTCGGCTGTAGGAACTGGATATGGGGCTGCTCCAGGTGTTCGCCTTCAGTTTCTTAGCCTTGTGCGGAACCCGAGTGCGCACTCAAGAACCGGAGTTC
AGCTATGGTTGCGCTGAAGGCAGCTGTTACCCCGCCACCGGTGACCTTCTCATAGGCCGAGCTCAGAAGCTCTCAGTGACCTCCACGTGCGGACTGCACAAACCGGAACCCTACTGTATTGTCAGCCA
CCTACAGGAGGACAAAAAATGCTTTATATGTGATTCCCAAGATCCTTATCATGAGACCCTCAATCCTGACAGCCATCTCATTGAAAATGTGGTCACTACATTTGCTCCAAACCGCCTCAAGATTTGGT
GGCAATCCGAAAATGGTGTGGAAAATGTAACTATCCAACTGGATTTGGAAGCAGAATTCCATTTTACTCATCTCATAATGACTTTCAAGACATTCCGTCCGGCTGCTATGCTGATAGAGCGATCGTCT
GACTTTGGTAAAACATGGGGCGTGTACAGATACTTCGCCTATGACTGTGAGAGCTCGTTCCCAGGCATCTCAACTGGTCCCATGAAAAAAGTCGATGATATAATTTGTGATTCCCGATATTCTGACAT
TGAACCCTCGACAGAAGGAGAGGTGATATTTCGTGCTTTAGATCCTGCATTCAAAATAGAAGATCCTTATAGCCCGAGGATACAGAATCTATTAAAAATCACCAACTTGAGAATCAAGTTTGTGAAAC
TGCATACTTTGGGAGATAACCTTTTGGATTCCAGAATGGAAATTAGGGAAAAGTACTACTATGCAGTTTATGATATGGTGGTCCGAGGAAATTGCTTCTGCTACGGCCACGCCAGTGAATGTGCCCCT
GTGGATGGATTCAGTGAGGACGTGGAAGGAATGGTCCATGGACACTGCATGTGCAGGCATAATACAAAGGGCTTAAACTGTGAACTGTGCATGGATTTCTACCATGATTTGCCCTGGAGACCTGCCGA
AGGTCGGAACAGCAATGCCTGTAAAAAGTGTAACTGCAACGAACATTCCAGCTCATGCCACTTTGACATGGCCGTGTTCCTGGCCACTGGGAATGTCAGCGGAGGAGTGTGTGATGATTGTCAGCACA
ACACCATGGGACGGAACTGTGAGCAGTGCAAACCGTTTTACTACCAGCACCCGGAGAGGGATATCCGAGATCCTAATCTCTGCGAAAAATGTACATGTGACCCAGCAGGTTCTCAGAATGGGGGAATC
TGTGACAGTTACACTGATTTTTCTGCTGGTCTCATTGCTGGTCAGTGTCGGTGTAAATTGCACGTGGAAGGAGAACATTGTGATATTTGCAAAGAAGGCTTCTATGACTTAAGTGCTGAAGATCCATT
TGGTTGTAAATCTTGTGCTTGCAACCCTCTGGGAACGATTCCTGGCGGAAATCCTTGTGATTCTGAGACTGGTTACTGCTACTGTAAGCGTCTGGTGACAGGACAGCATTGTGACCAGTGTCTGCCAC
AGCATTGGGGCTTGAGCAACGATCTGGACGGCTGTCGACCTTGTGACTGTGACTTCGGGGGAGCATTCAACAACAGTTGCTCTGCGGAGTCGGGCCAGTGCTCCTGTCGACCCCACATGATCGGAAGG
CAGTGTGACGGGGTGGAATCTGGGTACTACTTTACCACCTTGGATCACTACCTCTATGAAGCAGAGGAAGCCAGTTTGGGGCCTGGAGTCAGTGTGGTGGAACGGCAGTACATCCCAGACCGGATTCC
ATCCTGGACTGGAGCGGGCTTTGTCCGAGTGCCCGAGGGGGCTTATTTGGAGTTCTTCATTGACAACATACCATATTCCATGGAGTATGACATACTAATTCGCTATGAGCCACAGCTTCCCGATCACT
GGGAAAAAGCTGTCATCACAGTGCAGCGACCTGGGAAGATTCCAACCAGCAGCCGATGTGGTAACACTGTTCCTGATGATGACAACCAGGTGGTGTCATTATCACCAGGCTCAAGATACGTTGTCCTT
CCCCGCCCTGTGTGCTTTGAGAAGGGTATGAACTACACGGTGAGGCTGGAGCTGCCCCAGTACACTTCTTCCGATACTGACGTGGAGAGCCCCTACACACTCATTGACTCACTTGTTCTCATGCCTTA
TTGTAAATCGCTGGACATTTTCACCACGGGAGGCTCAGGAGATGGGGTCACCAACAGTGTCTGGGACACCTTTCAGAGATACCGGTGTCTGGAGAACAGCAGAAGTGTTGTGAAGACACCAATGACTG
ATGTCTGCAGAAACATCATCTTTAGCATTTCCGCCCTGTTACATCAAATGGGCCTGGCTTGCGAATGTGACCCTCAGGGCTCCTTGAGTTCTGTGTGTGACCCCAGCGGAGGCCAGTGCCAGTGTCGG
CCAAACGTGGTTGGAAGAACCTGTGACAGGTGTGCACCTGGAACCTTTGGCTTTGGCCCCAGCGGATGCAAACCTTGTGACTGCCACCCTCAAGGATCCGTCAATGCCTTCTGCGATGCGATCACTGG
CCAGTGCCACTGTTTCCACGGGGTGTATGCTCGGCAGTGTGACCAGTGTTTACCTGGGTACTGGGGCTTTCCAAGTTGCCAGCCCTGCCAGTGCAACGGGCATGCCGATGACTGTGACTCAGTGACCG
GGGAGTGCTTGGGCTGCCAGGACTACACCACAGGCCACAACTGTGAGAGGTGCTTGGCTGGTTACTATGGTGACCCCATCATTGGGTCAGGAGATCACTGCCGCCCTTGCCCTTGCCCAGATGGTCCT
GGCAGTGGACGCCAGTTTGCCAGGAGCTGTTACCAAGATCCTGTGACTCTACAGCTTGCCTGTGTTTGTGATCCTGGGTACATTGGCTCCAGATGTGAGGACTGTGCCTCAGGATACTTTGGCAATCC
CTCCAATGTTGGGGGGTCCTGTCAGCCTTGCCAGTGTCACCACAACATTGACACAACAGACCCAGAAGCTTGTGACAAGGAGACTGGAAGGTGTCTCAAGTGCCTGTACCACACGGAAGGGGACCATT
GCCAGTTCTGCCGATTTGGGTACTATGGTGATGCCCTCCGGCAGGACTGTAGAAAGTGTGTCTGCAATTACCTGGGCACCGTGCAGGAGCACTGTAATGGGTCTGACTGTCAGTGTGACAAAGCCACT
GGTCAGTGCTTGTGTCTTCCTAATGTGATCGGGCAGAACTGTGACCGCTGTGCGCCCAATACCTGGCAGCTGGCCAGTGGGACTGGGTGTGACCCATGTGACTGTAATTCTGCACATTCCTTCGGACC
ATCTTGTAATGAGTTCACAGGGCAGTGCCAGTGCATGCCGGGATTTGGAGGCCGTACCTGCAGCGAGTGTCAGGAGCTCTTCTGGGGAGATCCCGACGTGGAATGCCGAGCCTGTGACTGTGACCCCA
GGGGCATTGAGACACCACAGTGTGACCAGTCCACAGGCCAGTGTGTGTGTGTGGAGGGTGTCGAGGGTCCACGCTGTGACAAGTGTACACGAGGGTACTCAGGAGTCTTCCCCGACTGCACACCCTGC
CACCAGTGCTTTGCTCTCTGGGACGTGATCATCTCTGAGCTGACCAACAGGACCCACAAGTTCCTGGAGAAAGCCAAAGCCTTGAAGATCAGCGGTGTAATTGGACCTTACAGGGAGACTGTGGACTC
AGTGGAGAAGAAAATCAACGAGATAAAAGACATCCTGGCCCAGAGCCCAGCAGCAGAGCCACTGAAAAACATCGGGAATCTCTTTGAGGAAGCAGAGAAACTAACCAAAGATGTTACAGAAAAGATGG
CTCAAGTAGAAGTAAAATTATCTAACACAGCTTCACAAAGCAACAGCACAGCCAAAGAACTGGATTCCCTACAGGCAGAAGCCGAGAGCCTCGACAATACTGTGAAAGAACTTGCTGAACAACTGGAA
TTTATCAAAAACTCAGATATTAGGGGTGCCTTGGATAGTATTACCAAGTATTTCCAGACCTCTCTTGATGCAGAAGAGAGGGTGAATGCCTCCACCACAGATCCCAATAGCACTGTGGAACAGTCTGC
TCTCACCCGGGACAAAGTAGAAGACCTGATGCTGGAGAGAGAATCCCAGTTCAGGGAAAAACAAGAAGAACAGGCTCGACTTCTGGATGAACTGGCAGGCAAACTACAAAGTCTAGACCTTTCAGCTG
CTGCTGAAATGACATGTGGGACACCTCCAGGGGCTGATTGTTCTGAGACTGAATGTGGTGGCCCCAACTGCAGAACTGATGAAGGACAGAAGAAGTGTGGGGGGCCTGGCTGTGGTGGTCTGGTCACT
GTTGCCCACAGTGCCTGGCAGAAAGCTATGGACTTTGACCGAGATGTCCTGAATGCCCTGGCTGAAGTGGAACAACTCTCCAAAATGGTCTCTGAAGCAAAACTGAGGGCAGATGAGGCAAAACAGAA
TGCTCAGGATGTTCTGTTGAAAACAAATGCTACCAAAGAAAAAGTAGACAAGAGCAATGAGGATCTGAGAAATCTGATCAAGCAAATCAGAAACTTTTTGACTGAGGATAGTGCTGATTTGGACAGCA
TTGAAGCTGTTGCTAATGAAGTACTGAAAATGGAAATGCCTAGCACCCCACAGCAGTTACAGAACTTGACAGAAGACATCCGTGAACGAGTTGAAAGCCTTTCTCAAGTAGAGGTTATTCTACAGCAG
AGTGCTGCTGACATTGCCAGAGCTGAAATGTTGTTAGAAGAAGCTAAGAGAGCCAGCAAAAGTGCAACAGATGTTAAAATCACAGCAGATATGGTAAAGGAAGCTCTGGAGGAAGCAGAAAAGGCCCA
AATTGCAGCAGAGAAGGCAATTAAACAAGCAGATGAAGATATCCAAGGAACCCAGAACCTGTTAACTTCAATCGAATCTGAAACAGCAGCTTCCGAGGAAACACTGTCCAATGCCTCCCAGCGCCTCA
ATGAACTAGAAAAGAACGTGGTAGAACTTAAACGGAAGGCTGCCCATAACTCTGAGGAGGCAGAATACATTGAAAAAGTAGTATATACTGTAAAACAAAGTGCAGAAGATGTTAAGAAGACTCTGGAC
AGTGAACTTGATGAAAAGTATAAGAAAGTAGAAAATTTAATTGCCAAAAAATCTGAAGAGTCGGCTGATGCCAGAAGGAAAGCTGAAATGCTACAAAATGAAGCAAAAACACTTCTGGCTCAAGCAAA
CAGCAAACTGCAACTACTCAAAGACTTAGAAAGAAAATATGAGGACAATCAAAAATACTTAGAAGATAAAGCTCAAGAATTAGTGAGACTGGAAGGAGAGGTCCGTTCACTCCTTAAGGATATAAGCC
AGAAAGTTGCTGTTTATAGCACCTGCTTGTAACAAAGAAGAAAAGGCTATAAGATAGCTGAGGTGACCAAAGTAAAATATAAAATAGTTCCATTTAAAAAACTGATATAATGATGTTCAAAATAAAAC
TCATTACCTATTTAATGTTTTAATCACCAAATTTTATATGAAGTTAAATAAAGTATGGTGCTTTTA

hide sequence


Protein RefSeqs	XP_005319496	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006704.3
	ENSSTOP00000024024.1
GenBank Protein	KAG3277787	(Get FASTA)	NCBI Sequence Viewer
	KAG3277788	(Get FASTA)	NCBI Sequence Viewer
	KAG3277789	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005319496 ⟸ XM_005319439

- UniProtKB:

I3M9V5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLLQVFAFSFLALCGTRVRTQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGVENVTIQLDLE
AEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWGVYRYFAYDCESSFPGISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIRE
KYYYAVYDMVVRGNCFCYGHASECAPVDGFSEDVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQH
PERDIRDPNLCEKCTCDPAGSQNGGICDSYTDFSAGLIAGQCRCKLHVEGEHCDICKEGFYDLSAEDPFGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQHCDQCLPQHWGLSNDLDGCRPCDC
DFGGAFNNSCSAESGQCSCRPHMIGRQCDGVESGYYFTTLDHYLYEAEEASLGPGVSVVERQYIPDRIPSWTGAGFVRVPEGAYLEFFIDNIPYSMEYDILIRYEPQLPDHWEKAVITVQRPGKIPTS
SRCGNTVPDDDNQVVSLSPGSRYVVLPRPVCFEKGMNYTVRLELPQYTSSDTDVESPYTLIDSLVLMPYCKSLDIFTTGGSGDGVTNSVWDTFQRYRCLENSRSVVKTPMTDVCRNIIFSISALLHQM
GLACECDPQGSLSSVCDPSGGQCQCRPNVVGRTCDRCAPGTFGFGPSGCKPCDCHPQGSVNAFCDAITGQCHCFHGVYARQCDQCLPGYWGFPSCQPCQCNGHADDCDSVTGECLGCQDYTTGHNCER
CLAGYYGDPIIGSGDHCRPCPCPDGPGSGRQFARSCYQDPVTLQLACVCDPGYIGSRCEDCASGYFGNPSNVGGSCQPCQCHHNIDTTDPEACDKETGRCLKCLYHTEGDHCQFCRFGYYGDALRQDC
RKCVCNYLGTVQEHCNGSDCQCDKATGQCLCLPNVIGQNCDRCAPNTWQLASGTGCDPCDCNSAHSFGPSCNEFTGQCQCMPGFGGRTCSECQELFWGDPDVECRACDCDPRGIETPQCDQSTGQCVC
VEGVEGPRCDKCTRGYSGVFPDCTPCHQCFALWDVIISELTNRTHKFLEKAKALKISGVIGPYRETVDSVEKKINEIKDILAQSPAAEPLKNIGNLFEEAEKLTKDVTEKMAQVEVKLSNTASQSNST
AKELDSLQAEAESLDNTVKELAEQLEFIKNSDIRGALDSITKYFQTSLDAEERVNASTTDPNSTVEQSALTRDKVEDLMLERESQFREKQEEQARLLDELAGKLQSLDLSAAAEMTCGTPPGADCSET
ECGGPNCRTDEGQKKCGGPGCGGLVTVAHSAWQKAMDFDRDVLNALAEVEQLSKMVSEAKLRADEAKQNAQDVLLKTNATKEKVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTP
QQLQNLTEDIRERVESLSQVEVILQQSAADIARAEMLLEEAKRASKSATDVKITADMVKEALEEAEKAQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLSNASQRLNELEKNVVELKRKAAHN
SEEAEYIEKVVYTVKQSAEDVKKTLDSELDEKYKKVENLIAKKSEESADARRKAEMLQNEAKTLLAQANSKLQLLKDLERKYEDNQKYLEDKAQELVRLEGEVRSLLKDISQKVAVYSTCL

hide sequence

Ensembl Acc Id:

ENSSTOP00000006704 ⟸ ENSSTOT00000007502

Ensembl Acc Id:

ENSSTOP00000024024 ⟸ ENSSTOT00000032690

Protein Domains

Laminin EGF-like Laminin IV type B Laminin N-terminal

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007474	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007502.3	UniProtKB/TrEMBL
	ENSSTOT00000032690.1	UniProtKB/TrEMBL
Gene3D-CATH	Galactose-binding domain-like	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
	Tie2 ligand-binding domain superfamily	UniProtKB/TrEMBL
InterPro	EGF-like_dom	UniProtKB/TrEMBL
	Laminin/Netrin_ECM	UniProtKB/TrEMBL
	Laminin_EGF	UniProtKB/TrEMBL
	Laminin_IV_B	UniProtKB/TrEMBL
	Laminin_N	UniProtKB/TrEMBL
NCBI Gene	Lamb1	ENTREZGENE
PANTHER	LAMININ SUBUNIT BETA-1	UniProtKB/TrEMBL
	NETRIN/LAMININ-RELATED	UniProtKB/TrEMBL
Pfam	Laminin_EGF	UniProtKB/TrEMBL
	LAMININ_IV_B	UniProtKB/TrEMBL
	Laminin_N	UniProtKB/TrEMBL
PRINTS	EGFLAMININ	UniProtKB/TrEMBL
PROSITE	EGF_LAM_1	UniProtKB/TrEMBL
	EGF_LAM_2	UniProtKB/TrEMBL
	LAMININ_IVB	UniProtKB/TrEMBL
	LAMININ_NTER	UniProtKB/TrEMBL
SMART	EGF	UniProtKB/TrEMBL
	EGF_Lam	UniProtKB/TrEMBL
	LamNT	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
UniProt	I3M9V5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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