Frzb (frizzled related protein) - Rat Genome Database

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Gene: Frzb (frizzled related protein) Ictidomys tridecemlineatus
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Symbol: Frzb
Name: frizzled related protein
RGD ID: 12486085
Description: ENCODES a protein that exhibits Wnt-protein binding (inferred); INVOLVED IN cochlea morphogenesis (ortholog); convergent extension involved in organogenesis (ortholog); epithelial cell development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH lung adenocarcinoma (ortholog); lung non-small cell carcinoma (ortholog); lung squamous cell carcinoma (ortholog); FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: secreted frizzled-related protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,886,744 - 142,917,194 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,440,148 - 11,470,967 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,440,414 - 11,471,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Frzb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,886,744 - 142,917,194 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,440,148 - 11,470,967 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,440,414 - 11,471,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRZB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382182,833,275 - 182,866,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2182,833,275 - 182,866,637 (-)EnsemblGRCh38hg38GRCh38
GRCh372183,698,002 - 183,731,365 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,406,982 - 183,439,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 342183,524,242 - 183,557,004NCBI
Celera2177,294,242 - 177,327,734 (-)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2175,555,371 - 175,588,842 (-)NCBIHuRef
CHM1_12183,703,943 - 183,737,410 (-)NCBICHM1_1
T2T-CHM13v2.02183,322,235 - 183,355,596 (-)NCBIT2T-CHM13v2.0
Frzb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,242,314 - 80,277,740 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl280,242,314 - 80,277,969 (-)EnsemblGRCm39 Ensembl
GRCm38280,411,970 - 80,447,396 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,411,970 - 80,447,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv37280,252,127 - 80,287,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36280,212,809 - 80,248,235 (-)NCBIMGSCv36mm8
Celera282,075,833 - 82,112,383 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.13NCBI
Frzb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8385,739,162 - 85,772,168 (-)NCBIGRCr8
mRatBN7.2365,332,274 - 65,365,208 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl365,332,277 - 65,365,208 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx368,678,473 - 68,711,328 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0377,262,043 - 77,294,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0375,024,919 - 75,057,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0367,635,604 - 67,668,772 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,635,607 - 67,668,772 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0374,196,163 - 74,229,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4363,350,504 - 63,383,436 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1363,246,875 - 63,295,070 (-)NCBI
Celera364,780,097 - 64,813,027 (-)NCBICelera
Cytogenetic Map3q24NCBI
Frzb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,598,765 - 14,631,154 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540314,598,765 - 14,627,997 (+)NCBIChiLan1.0ChiLan1.0
FRZB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21385,492,596 - 85,525,895 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B85,507,574 - 85,540,875 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B70,106,378 - 70,139,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B187,915,579 - 187,948,855 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B187,915,579 - 187,948,855 (-)Ensemblpanpan1.1panPan2
FRZB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13625,884,557 - 25,907,436 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,884,557 - 25,907,369 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3625,782,614 - 25,812,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03626,038,918 - 26,069,318 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3626,039,164 - 26,076,017 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13626,165,036 - 26,195,383 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03626,095,997 - 26,126,346 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03626,237,636 - 26,268,037 (-)NCBIUU_Cfam_GSD_1.0
FRZB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,332,860 - 88,377,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11588,332,856 - 88,377,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21597,838,143 - 97,881,633 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FRZB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,353,393 - 68,385,135 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1068,351,922 - 68,385,110 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040131,158,267 - 131,189,920 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Frzb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248444,608,016 - 4,643,141 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248444,608,016 - 4,639,582 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000000685   ⟹   ENSSTOP00000000615
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650911,440,148 - 11,470,967 (-)Ensembl
RefSeq Acc Id: XM_005324682   ⟹   XP_005324739
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,886,744 - 142,917,188 (-)NCBI
SpeTri2.0NW_00493650911,440,414 - 11,471,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294560   ⟹   XP_040150494
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303142,886,744 - 142,917,194 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005324739 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150494 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000615.3
GenBank Protein KAG3274826 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324739   ⟸   XM_005324682
- Peptide Label: isoform X1
- UniProtKB: I3LX55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150494   ⟸   XM_040294560
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000000615   ⟸   ENSSTOT00000000685
Protein Domains
FZ   NTR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000687 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000685.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
  2.40.50.120 UniProtKB/TrEMBL
InterPro Frizzled/SFRP UniProtKB/TrEMBL
  Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  Netrin_domain UniProtKB/TrEMBL
  Netrin_module_non-TIMP UniProtKB/TrEMBL
  NTR_Sfrp3 UniProtKB/TrEMBL
  SFRP3_CRD UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
NCBI Gene Frzb ENTREZGENE
PANTHER PTHR11309 UniProtKB/TrEMBL
  PTHR11309:SF97 UniProtKB/TrEMBL
Pfam NTR UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
PROSITE NTR UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
SMART C345C UniProtKB/TrEMBL
  FRI UniProtKB/TrEMBL
Superfamily-SCOP SSF50242 UniProtKB/TrEMBL
  SSF63501 UniProtKB/TrEMBL
UniProt I3LX55 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Frzb  frizzled related protein    frizzled-related protein  Symbol and/or name change 5135510 APPROVED