Symbol:
Actr1a
Name:
actin related protein 1A
RGD ID:
12457876
Description:
INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH colon cancer (ortholog); desmoplastic/nodular medulloblastoma (ortholog); Down syndrome (ortholog); FOUND IN centriole (ortholog); COPI-coated vesicle (ortholog); manchette (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
alpha-centractin; ARP1 actin related protein 1 homolog A; ARP1 actin-related protein 1 homolog A, centractin alpha
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 31,781,260 - 31,799,087 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936600 3,384,423 - 3,402,304 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936600 3,384,466 - 3,402,312 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Actr1a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024407213 31,781,260 - 31,799,087 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936600 3,384,423 - 3,402,304 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936600 3,384,466 - 3,402,312 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
ACTR1A (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 102,479,229 - 102,502,712 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 102,461,881 - 102,502,712 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 104,238,986 - 104,262,469 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 104,228,976 - 104,252,452 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 104,228,976 - 104,252,452 NCBI Celera 10 97,979,888 - 98,003,421 (-) NCBI Celera Cytogenetic Map 10 q24.32 NCBI HuRef 10 97,872,832 - 97,896,289 (-) NCBI HuRef CHM1_1 10 104,522,437 - 104,545,972 (-) NCBI CHM1_1 T2T-CHM13v2.0 10 103,364,208 - 103,387,699 (-) NCBI T2T-CHM13v2.0
Actr1a (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 19 46,365,252 - 46,384,180 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 19 46,365,250 - 46,384,187 (-) Ensembl GRCm39 Ensembl GRCm38 19 46,376,813 - 46,395,741 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 19 46,376,811 - 46,395,748 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 19 46,451,304 - 46,470,225 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 19 46,430,125 - 46,449,046 (-) NCBI MGSCv36 mm8 Celera 19 47,139,989 - 47,159,305 (-) NCBI Celera Cytogenetic Map 19 C3 NCBI cM Map 19 38.84 NCBI
Actr1a (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 255,179,241 - 255,199,009 (-) NCBI GRCr8 mRatBN7.2 1 245,237,821 - 245,256,618 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 245,237,826 - 245,256,495 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 253,359,208 - 253,377,911 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 260,053,858 - 260,072,550 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 252,705,669 - 252,724,353 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 266,123,864 - 266,142,621 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 266,123,870 - 266,142,538 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 273,554,805 - 273,573,677 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 251,592,429 - 251,611,097 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 251,855,583 - 251,874,603 (-) NCBI Celera 1 241,020,570 - 241,039,215 (-) NCBI Celera Cytogenetic Map 1 q54 NCBI
Actr1a (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955485 7,926,744 - 7,944,648 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955485 7,926,744 - 7,944,648 (+) NCBI ChiLan1.0 ChiLan1.0
ACTR1A (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 114,366,764 - 114,390,285 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 114,372,086 - 114,395,607 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 99,082,765 - 99,106,305 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 102,547,695 - 102,570,766 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 102,547,695 - 102,570,766 (-) Ensembl panpan1.1 panPan2
ACTR1A (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 28 14,972,512 - 14,990,434 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 28 14,972,515 - 14,990,434 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 28 15,144,838 - 15,162,754 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 28 15,446,553 - 15,464,473 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 28 15,443,623 - 15,464,462 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 28 14,991,502 - 15,009,420 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 28 15,030,653 - 15,048,570 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 28 15,163,237 - 15,181,156 (-) NCBI UU_Cfam_GSD_1.0
ACTR1A (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 113,480,196 - 113,498,740 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 113,480,196 - 113,498,794 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 123,335,570 - 123,354,172 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
ACTR1A (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 95,507,685 - 95,531,015 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 95,506,675 - 95,530,984 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 56,615,155 - 56,638,590 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Actr1a (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000014437 ⟹ ENSSTOP00000012932
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936600 3,384,423 - 3,402,304 (+) Ensembl
RefSeq Acc Id:
XM_005333619 ⟹ XP_005333676
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,781,260 - 31,799,087 (+) NCBI SpeTri2.0 NW_004936600 3,384,466 - 3,402,312 (+) NCBI
Sequence:
AGACTGCGCATGCGTGTCTCTGGCGTTAGCGGCTGACCCGGCTGGCAGTTCCTTCCTCGGAAGGAGAGATTCCTCTGCCATGGAGTCCTACGATGTGATCGCCAACCAGCCTGTTGTGATCGACAACG GATCCGGTGTGATTAAAGCTGGTTTTGCTGGTGATCAAATCCCCAAATACTGCTTTCCAAACTATGTGGGAAGACCCAAGCATGTTCGTGTCATGGCAGGAGCCCTAGAAGGTGATATCTTCATTGGC CCCAAAGCTGAGGAGCACCGAGGGCTGCTGTCAATCCGCTACCCCATGGAACATGGCATTGTCAAGGACTGGAATGACATGGAGCGCATCTGGCAATATGTTTATTCTAAGGACCAGCTGCAGACTTT CTCAGAGGAGCATCCTGTGCTCCTGACAGAGGCACCTTTAAACCCACGGAAAAACCGAGAACGAGCTGCTGAAGTTTTCTTCGAGACCTTCAATGTGCCAGCTCTTTTCATCTCCATGCAAGCTGTGC TTAGCCTTTATGCCACGGGCAGGACTACAGGGGTTGTGCTGGATTCTGGGGATGGTGTCACCCATGCTGTGCCCATTTATGAGGGCTTCGCCATGCCTCACTCAATCATGCGCATCGACATCGCTGGA CGAGATGTCTCTCGCTTCCTTCGCCTCTACCTGCGTAAGGAGGGCTATGATTTCCACTCATCCTCCGAGTTTGAGATTGTCAAAGCCATAAAAGAAAGAGCCTGCTACCTGTCCATAAACCCCCAGAA GGATGAGACGCTAGAGACGGAGAAGGCTCAGTACTACCTGCCAGACGGCAGCACCATTGAGATTGGTCCTTCCCGATTCCGGGCTCCTGAACTGCTGTTTAGACCGGACTTGATTGGTGAGGAGAGCG AGGGCATCCATGAGGTCCTGGTATTTGCCATTCAGAAGTCTGACATGGACCTGCGGCGCACACTTTTCTCCAACATTGTCCTCTCTGGAGGCTCCACACTGTTTAAAGGTTTTGGTGACAGGCTACTG AGTGAAGTAAAGAAACTGGCTCCAAAAGACGTGAAGATCAGGATATCTGCCCCTCAGGAGAGACTGTACTCTACATGGATTGGGGGATCTATCCTTGCCTCCCTGGACACCTTTAAGAAGATGTGGGT CTCTAAGAAGGAATATGAGGAAGATGGTGCCCGATCCATCCACAGGAAAACCTTCTAATGTTGAGACATCATCTTCACCTCTCTCTGAAGTTAACTCCACTTTAAAACTCGCTTTCTTGAGTCGGAGT GTTTGCGAGGAACTGCCTGTGTGTGTGAGTGTGTGTGGGTACGAGTGTGTGCGCGTATGCCAGGGCCGTGTGGCCCAGGGATCCCTGGGCCCGGAAAGAACGATGAACTACCCACGATGGTGATGGCC TGAGGCCTGGGGTTGACCACTAACTGGCCCCTGACAGGGAAGAGTGCTGGCAGAGGCCCCACTTCCTTTCTCAGCTGGGCCTTTGCTTGGCTGTGTGGGACCCTGGTTGCCACCAGAGGGAGATCTTG CTGCTGCCCTGCCTAGGCTGGGCTGGCCCCACCCTACCACCACCTCCAGGGTGCCCTGAGGTCCAAAGCAGCTGCTGCCTTCCCTAGCTCCTCATTCTGCTATCGGTGCCTCTTGATCATGGACTGAG GACTGGGACTGGGGCTAAGTCCTTCTCGTTTTGTTGCGGTTTGGGTTTGGGAGGCTGAGAAGCTCTCCATTATGGTTATAGAGACTAGGGTAAGGAGAGAGCAGGGAGCCCTCATGTCCACCTATACA CCAGGACAACACTGGACACTTGAAGAGACCAGCTCTGATTGGCTGCAGAGTTAATGCTTCAAGCTCCAGTTCCATCCAGAGGGTCTTGGGAGAGTTTAAGGAGCCTATTGGCTCTGGTCCTATTACTC GCTTCTTATCCATCCTTGTTTCAATGCCATCTTAACAATTTTATTTATTGAAGTATATGTTCAATAAGGGGACTGGAGAGGGGGGCTCACTGCTTCCTGCCTACTAGTCACCCTGCTCACACTAATGT TTACAGCACCTAGGTTTAGTGTAGCATCCAGGGCCTCGCCACTCCCTACTGATGGTGAACTGACAGTATCCATAGGCCTCAGGACCCTTTGGGATTGAAGGCTACACTCCCCCGACCAGCCCTTTTTT TTTTTTCCCCTCCCTCCTGCACTTGCTCACCACCCTGAAACCAACGGTCTGGTTGCTGGTTGGATTTTCTGAAATAGGAGATAGAATCACTCTTCAGCAGAGGCCCCTTGCAAGGGAGGGGCATTGGG ACACAGTCCCCCTGAGACTGGGGAAAGCTACAGTTATCCAAGTTGCCTTTTGCACTCTAGCTGAGCAGGGGGACTAGGTTGAAGGGCAGGAATGCCCCCTCTGGGTTGATCATGTGCTGTTCTCATCT TTGGACCTATTTGGGAAGGGAAGGAAGGAAAGGGCCAGACCAGAGTGCCAGGAGGGCTCAGGCCTGGCCCTTAGTAGTGGCCCAAAGACCTTCAACCCAGATGGTACAAAGCTGGAGGAGCCTGTCTT CACTGGGACCCTCACCTGTGACACCAAGTCCCAACCTAGTCCTAGATTCCAGGCAGTATTCTTCCCTACGCCATCCTATGACCAAAGGCCCCTGCCAGATGTGGGCCAAAGCAGGTGTGTGAAACCGA TGTGGCAACCCACGGACTGCAGTGTGCTTAACCAGCTCACCCCCCTTCTCTTAGCCCAAGCCCATCCCTCGCACAGCCTCGCACAAACCACATTGCCTGGTGGGGCCCAGTGTACTTAAATAAAGTCG TTCCAATACACATGTCAA
hide sequence
RefSeq Acc Id:
XM_040273554 ⟹ XP_040129488
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,781,310 - 31,799,087 (+) NCBI
RefSeq Acc Id:
XM_040273555 ⟹ XP_040129489
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024407213 31,790,810 - 31,799,087 (+) NCBI
RefSeq Acc Id:
XP_005333676 ⟸ XM_005333619
- Peptide Label:
isoform X1
- UniProtKB:
I3MMX5 (UniProtKB/TrEMBL)
- Sequence:
MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVF FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRF RAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF
hide sequence
RefSeq Acc Id:
XP_040129488 ⟸ XM_040273554
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_040129489 ⟸ XM_040273555
- Peptide Label:
isoform X2
Ensembl Acc Id:
ENSSTOP00000012932 ⟸ ENSSTOT00000014437
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2019-01-15
Actr1a
actin related protein 1A
ARP1 actin related protein 1 homolog A
Symbol and/or name change
5135510
APPROVED
2017-05-09
Actr1a
ARP1 actin related protein 1 homolog A
ARP1 actin-related protein 1 homolog A, centractin alpha
Symbol and/or name change
5135510
APPROVED