Actr1a (actin related protein 1A) - Rat Genome Database

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Gene: Actr1a (actin related protein 1A) Ictidomys tridecemlineatus
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Symbol: Actr1a
Name: actin related protein 1A
RGD ID: 12457876
Description: INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH colon cancer (ortholog); desmoplastic/nodular medulloblastoma (ortholog); Down syndrome (ortholog); FOUND IN centriole (ortholog); COPI-coated vesicle (ortholog); manchette (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-centractin; ARP1 actin related protein 1 homolog A; ARP1 actin-related protein 1 homolog A, centractin alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirrelcolon cancer  ISORGD:13159739068941 RGDPMID:26422100|REF_RGD_ID:13831341
Actr1aSquirrelDown syndrome  ISORGD:13159739068941protein:decreased expression:cortexRGDPMID:11829462|REF_RGD_ID:13831340
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirreldesmoplastic/nodular medulloblastoma  ISORGD:13159738554872ClinVar Annotator: match by term: Desmoplastic/nodular medulloblastomaClinVarPMID:12068298


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirrelspermatogenesis  ISORGD:13070259068941 RGDPMID:10671377|REF_RGD_ID:11541119

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirrelcell cortex located_inIEAUniProtKB:P61163|ensembl:ENSP00000358921150520179 EnsemblGO_REF:0000107
Actr1aSquirrelcentriole  ISORGD:13070259068941 RGDPMID:10671377|REF_RGD_ID:11541119
Actr1aSquirrelcentrosome located_inIEAUniProtKB:P61163|ensembl:ENSP00000358921150520179 EnsemblGO_REF:0000107
Actr1aSquirrelCOPI-coated vesicle  ISORGD:13070259068941 RGDPMID:10196146|REF_RGD_ID:11541123
Actr1aSquirrelcytoplasm located_inIEAUniProtKB:P61163|ensembl:ENSP00000358921150520179 EnsemblGO_REF:0000107
Actr1aSquirrelmanchette  ISORGD:13070259068941 RGDPMID:10671377|REF_RGD_ID:11541119

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirrelprotein binding enablesISOUniProtKB:Q9P287-29068941 PMID:28394342UniProtPMID:28394342

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Actr1aSquirrelmitochondria transport pathway  ISORGD:13159739068941 RGDPMID:15473859|REF_RGD_ID:10402155


Actr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTR1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,479,229 - 102,502,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,461,881 - 102,502,712 (-)EnsemblGRCh38hg38GRCh38
GRCh3710104,238,986 - 104,262,469 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,228,976 - 104,252,452 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410104,228,976 - 104,252,452NCBI
Celera1097,979,888 - 98,003,421 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,872,832 - 97,896,289 (-)NCBIHuRef
CHM1_110104,522,437 - 104,545,972 (-)NCBICHM1_1
T2T-CHM13v2.010103,364,208 - 103,387,699 (-)NCBIT2T-CHM13v2.0
Actr1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,365,252 - 46,384,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,365,250 - 46,384,187 (-)EnsemblGRCm39 Ensembl
GRCm381946,376,813 - 46,395,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,376,811 - 46,395,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,451,304 - 46,470,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,430,125 - 46,449,046 (-)NCBIMGSCv36mm8
Celera1947,139,989 - 47,159,305 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.84NCBI
Actr1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,179,241 - 255,199,009 (-)NCBIGRCr8
mRatBN7.21245,237,821 - 245,256,618 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,237,826 - 245,256,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,359,208 - 253,377,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,053,858 - 260,072,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,705,669 - 252,724,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,123,864 - 266,142,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,123,870 - 266,142,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,554,805 - 273,573,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,592,429 - 251,611,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,855,583 - 251,874,603 (-)NCBI
Celera1241,020,570 - 241,039,215 (-)NCBICelera
Cytogenetic Map1q54NCBI
Actr1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,926,744 - 7,944,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,926,744 - 7,944,648 (+)NCBIChiLan1.0ChiLan1.0
ACTR1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,366,764 - 114,390,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,372,086 - 114,395,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,082,765 - 99,106,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,547,695 - 102,570,766 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,547,695 - 102,570,766 (-)Ensemblpanpan1.1panPan2
ACTR1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,972,512 - 14,990,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,972,515 - 14,990,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,144,838 - 15,162,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,446,553 - 15,464,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,443,623 - 15,464,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,991,502 - 15,009,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,030,653 - 15,048,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,163,237 - 15,181,156 (-)NCBIUU_Cfam_GSD_1.0
ACTR1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,480,196 - 113,498,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,480,196 - 113,498,794 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,335,570 - 123,354,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTR1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,507,685 - 95,531,015 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,506,675 - 95,530,984 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,615,155 - 56,638,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actr1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,859,043 - 1,881,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,861,185 - 1,880,706 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSSTOT00000014437   ⟹   ENSSTOP00000012932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)Ensembl
RefSeq Acc Id: XM_005333619   ⟹   XP_005333676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBI
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040273554   ⟹   XP_040129488
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,781,310 - 31,799,087 (+)NCBI
RefSeq Acc Id: XM_040273555   ⟹   XP_040129489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,790,810 - 31,799,087 (+)NCBI
Protein RefSeqs XP_005333676 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129488 (Get FASTA)   NCBI Sequence Viewer  
  XP_040129489 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012932.2
GenBank Protein KAG3264174 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264175 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333676   ⟸   XM_005333619
- Peptide Label: isoform X1
- UniProtKB: I3MMX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040129488   ⟸   XM_040273554
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040129489   ⟸   XM_040273555
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000012932   ⟸   ENSSTOT00000014437



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000014434 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014437.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
  Actin, Chain A, domain 4 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actr1a ENTREZGENE
PANTHER PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt I3MMX5 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-15 Actr1a  actin related protein 1A    ARP1 actin related protein 1 homolog A  Symbol and/or name change 5135510 APPROVED
2017-05-09 Actr1a  ARP1 actin related protein 1 homolog A    ARP1 actin-related protein 1 homolog A, centractin alpha  Symbol and/or name change 5135510 APPROVED