ACTR1A (actin related protein 1A) - Rat Genome Database

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Gene: ACTR1A (actin related protein 1A) Sus scrofa
Analyze
Symbol: ACTR1A
Name: actin related protein 1A
RGD ID: 13887793
Description: ENCODES a protein that exhibits ATP binding (inferred); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH colon cancer (ortholog); desmoplastic/nodular medulloblastoma (ortholog); Down syndrome (ortholog); FOUND IN centriole (ortholog); COPI-coated vesicle (ortholog); manchette (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-centractin; ARP1 actin related protein 1 homolog A; ARP1 actin-related protein 1 homolog A, centractin alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,480,196 - 113,498,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,480,196 - 113,498,794 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,335,570 - 123,354,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
ACTR1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,480,196 - 113,498,740 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,480,196 - 113,498,794 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,335,570 - 123,354,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTR1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,479,229 - 102,502,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,461,881 - 102,502,712 (-)EnsemblGRCh38hg38GRCh38
GRCh3710104,238,986 - 104,262,469 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,228,976 - 104,252,452 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410104,228,976 - 104,252,452NCBI
Celera1097,979,888 - 98,003,421 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,872,832 - 97,896,289 (-)NCBIHuRef
CHM1_110104,522,437 - 104,545,972 (-)NCBICHM1_1
T2T-CHM13v2.010103,364,208 - 103,387,699 (-)NCBIT2T-CHM13v2.0
Actr1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,365,252 - 46,384,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,365,250 - 46,384,187 (-)EnsemblGRCm39 Ensembl
GRCm381946,376,813 - 46,395,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,376,811 - 46,395,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,451,304 - 46,470,225 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,430,125 - 46,449,046 (-)NCBIMGSCv36mm8
Celera1947,139,989 - 47,159,305 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.84NCBI
Actr1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,179,241 - 255,199,009 (-)NCBIGRCr8
mRatBN7.21245,237,821 - 245,256,618 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,237,826 - 245,256,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,359,208 - 253,377,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,053,858 - 260,072,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,705,669 - 252,724,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,123,864 - 266,142,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,123,870 - 266,142,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,554,805 - 273,573,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,592,429 - 251,611,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,855,583 - 251,874,603 (-)NCBI
Celera1241,020,570 - 241,039,215 (-)NCBICelera
Cytogenetic Map1q54NCBI
Actr1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,926,744 - 7,944,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,926,744 - 7,944,648 (+)NCBIChiLan1.0ChiLan1.0
ACTR1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,366,764 - 114,390,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,372,086 - 114,395,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,082,765 - 99,106,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,547,695 - 102,570,766 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,547,695 - 102,570,766 (-)Ensemblpanpan1.1panPan2
ACTR1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,972,512 - 14,990,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,972,515 - 14,990,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,144,838 - 15,162,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,446,553 - 15,464,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,443,623 - 15,464,462 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,991,502 - 15,009,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,030,653 - 15,048,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,163,237 - 15,181,156 (-)NCBIUU_Cfam_GSD_1.0
Actr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,781,260 - 31,799,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,384,423 - 3,402,304 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,384,466 - 3,402,312 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTR1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,507,685 - 95,531,015 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,506,675 - 95,530,984 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,615,155 - 56,638,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actr1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,859,043 - 1,881,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,861,185 - 1,880,706 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.
Variants

.
Variants in ACTR1A
608 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000011578   ⟹   ENSSSCP00000011276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14113,480,197 - 113,498,740 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000037989   ⟹   ENSSSCP00000037324
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14113,481,925 - 113,491,807 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000061558   ⟹   ENSSSCP00000043595
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14113,480,197 - 113,491,807 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000098121   ⟹   ENSSSCP00000076680
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14113,480,196 - 113,491,418 (-)Ensembl
RefSeq Acc Id: XM_001928877   ⟹   XP_001928912
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114113,480,196 - 113,498,794 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338452
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114113,480,196 - 113,498,793 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001928912   ⟸   XM_001928877
- UniProtKB: A0A8D1PMN0 (UniProtKB/TrEMBL),   A0A8D0VKQ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000011276   ⟸   ENSSSCT00000011578
Ensembl Acc Id: ENSSSCP00000043595   ⟸   ENSSSCT00000061558
Ensembl Acc Id: ENSSSCP00000037324   ⟸   ENSSSCT00000037989
Ensembl Acc Id: ENSSSCP00000076680   ⟸   ENSSSCT00000098121


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010585 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025076566 UniProtKB/Swiss-Prot
  ENSSSCG00030011917 UniProtKB/TrEMBL
  ENSSSCG00040059320 UniProtKB/TrEMBL
  ENSSSCG00055003797 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011578 ENTREZGENE
  ENSSSCT00000011578.4 UniProtKB/Swiss-Prot
  ENSSSCT00000037989 ENTREZGENE
  ENSSSCT00000037989.2 UniProtKB/TrEMBL
  ENSSSCT00000061558.2 UniProtKB/TrEMBL
  ENSSSCT00000098121.1 UniProtKB/TrEMBL
  ENSSSCT00025106107.1 UniProtKB/Swiss-Prot
  ENSSSCT00030016357.1 UniProtKB/TrEMBL
  ENSSSCT00040080814.1 UniProtKB/TrEMBL
  ENSSSCT00055007558.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100156619 UniProtKB/TrEMBL
NCBI Gene ACTR1A ENTREZGENE
PANTHER ACTIN UniProtKB/Swiss-Prot
  ALPHA-CENTRACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BETA-CENTRACTIN UniProtKB/TrEMBL
  PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Actin-like ATPase domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287A059_PIG UniProtKB/TrEMBL
  A0A287AI87_PIG UniProtKB/TrEMBL
  A0A8D0VKQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PMN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FEE3_PIG UniProtKB/TrEMBL
  ACTZ_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:85049 ENTREZGENE