Advanced Search (OLGA)

Gene: SMUG1 (single-strand-selective monofunctional uracil-DNA glycosylase 1) Canis lupus familiaris

Subscribe to Updates

Analyze

Symbol:

SMUG1

Name:

single-strand-selective monofunctional uracil-DNA glycosylase 1

RGD ID:

12411280

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity (ortholog); uracil DNA N-glycosylase activity (ortholog); INVOLVED IN DNA repair (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

single-strand selective monofunctional uracil DNA glycosylase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,086,675 - 1,093,175 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,089,808 - 1,111,129 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,157,542 - 45,164,017 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,088,178 - 1,094,647 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,088,357 - 1,235,362 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,107,011 - 1,113,490 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,088,345 - 1,094,825 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,561,546 - 45,568,018 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMUG1	Dog	Neurodevelopmental Disorders		ISO	SMUG1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
SMUG1	Dog	prostate cancer		ISO	SMUG1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:23265383

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMUG1	Dog	base-excision repair	involved_in	IEA	InterPro:IPR039134	150520179		InterPro	GO_REF:0000002
SMUG1	Dog	DNA damage response	involved_in	IEA	UniProtKB-KW:KW-0227	150520179		UniProt	GO_REF:0000043
SMUG1	Dog	DNA repair		ISO	Smug1 (Rattus norvegicus)	9068941		RGD	PMID:12718542 and REF_RGD_ID:2317001
SMUG1	Dog	DNA repair	involved_in	IEA	UniProtKB-KW:KW-0234	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMUG1	Dog	cytosol	located_in	ISO	SMUG1 (Homo sapiens)	9068941		HPA	GO_REF:0000052
SMUG1	Dog	fibrillar center	located_in	ISO	SMUG1 (Homo sapiens)	9068941		HPA	GO_REF:0000052
SMUG1	Dog	nucleolus	located_in	ISO	SMUG1 (Homo sapiens)	9068941	PMID:12161446	HGNC-UCL	PMID:12161446
SMUG1	Dog	nucleoplasm	located_in	ISO	SMUG1 (Homo sapiens)	9068941		HPA	GO_REF:0000052
SMUG1	Dog	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
SMUG1	Dog	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SMUG1	Dog	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	150520179		UniProt	GO_REF:0000043
SMUG1	Dog	DNA N-glycosylase activity	enables	IEA	ARBA:ARBA00028980	150520179		UniProt	GO_REF:0000117
SMUG1	Dog	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
SMUG1	Dog	identical protein binding	enables	ISO	UniProtKB:Q53HV7-2	9068941	PMID:32296183	IntAct	PMID:32296183
SMUG1	Dog	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity		ISO	Smug1 (Rattus norvegicus)	9068941		RGD	PMID:12718542 and REF_RGD_ID:2317001
SMUG1	Dog	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	enables	IBA	PANTHER:PTN000996960 and Smug1 (Rattus norvegicus)	150520179		GO_Central	GO_REF:0000033
SMUG1	Dog	protein binding	enables	ISO	UniProtKB:Q93062	9068941	PMID:16189514	IntAct	PMID:16189514
SMUG1	Dog	protein binding	enables	ISO	UniProtKB:O43186 more ...	9068941	PMID:26871637	IntAct	PMID:26871637
SMUG1	Dog	protein binding	enables	ISO	UniProtKB:Q08AM6	9068941	PMID:25416956 and PMID:29892012	IntAct	PMID:25416956 and PMID:29892012
SMUG1	Dog	protein binding	enables	ISO	UniProtKB:A8MQ03 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
SMUG1	Dog	protein binding	enables	ISO	UniProtKB:Q96CV9	9068941	PMID:32814053	IntAct	PMID:32814053
SMUG1	Dog	single-strand selective uracil DNA N-glycosylase activity	enables	IEA	InterPro:IPR039134	150520179		InterPro	GO_REF:0000002
SMUG1	Dog	uracil DNA N-glycosylase activity		ISO	Smug1 (Rattus norvegicus)	9068941		RGD	PMID:12718542 and REF_RGD_ID:2317001
SMUG1	Dog	uracil DNA N-glycosylase activity	enables	IBA	PANTHER:PTN000996960 more ...	150520179		GO_Central	GO_REF:0000033

PMID:22301074	PMID:30032202

SMUG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,086,675 - 1,093,175 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,089,808 - 1,111,129 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	45,157,542 - 45,164,017 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,088,178 - 1,094,647 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,088,357 - 1,235,362 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,107,011 - 1,113,490 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,088,345 - 1,094,825 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,561,546 - 45,568,018 (-)	NCBI		UU_Cfam_GSD_1.0

SMUG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	54,158,235 - 54,188,985 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	54,121,277 - 54,189,008 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,574,150 - 54,582,769 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,861,519 - 52,869,024 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	54,226,170 - 54,233,675 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,611,811 - 51,620,446 (-)	NCBI		HuRef
CHM1_1	12	54,540,762 - 54,549,526 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	54,119,277 - 54,154,492 (-)	NCBI		T2T-CHM13v2.0

Smug1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	103,061,717 - 103,077,360 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	103,061,717 - 103,075,519 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	103,153,290 - 103,168,939 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	103,153,290 - 103,167,092 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,983,721 - 102,993,715 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,981,324 - 102,991,318 (-)	NCBI		MGSCv36	mm8
Celera	15	105,314,542 - 105,324,536 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.2	NCBI

Smug1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	136,166,157 - 136,177,673 (-)	NCBI		GRCr8
mRatBN7.2	7	134,288,565 - 134,302,179 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,287,675 - 134,297,226 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	136,045,289 - 136,047,414 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,274,666 - 138,276,791 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	138,260,724 - 138,262,849 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	144,774,155 - 144,788,333 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,774,160 - 144,778,656 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,560,270 - 142,569,924 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	142,064,428 - 142,066,553 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	142,144,616 - 142,151,752 (-)	NCBI
Celera	7	130,715,767 - 130,717,892 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Smug1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,431,721 - 1,447,292 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,432,988 - 1,449,019 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMUG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	39,991,866 - 39,999,340 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	39,988,635 - 39,996,093 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,564,624 - 34,572,063 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,288,412 - 35,296,670 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,288,412 - 35,296,670 (+)	Ensembl	panpan1.1		panPan2

Smug1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,762,394 - 61,796,876 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	11,395,834 - 11,402,377 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	11,395,513 - 11,416,426 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMUG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,398,252 - 19,412,648 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,375,244 - 19,412,656 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	20,035,790 - 20,050,156 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMUG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,292,780 - 50,307,828 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,289,154 - 50,300,492 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,741,787 - 195,751,095 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smug1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,223,600 - 2,231,642 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,185,959 - 2,232,541 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in SMUG1
162 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 7q32.1-36.3(chr7:129310166-159282390)x3	copy number gain	See cases [RCV000050876]	Chr7:129310166..159282390 [GRCh38] Chr7:128950007..159075079 [GRCh37] Chr7:128737243..158767840 [NCBI36] Chr7:7q32.1-36.3	pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132850196-159325876)x3	copy number gain	See cases [RCV000051101]	Chr7:132850196..159325876 [GRCh38] Chr7:132534956..159118566 [GRCh37] Chr7:132185496..158811327 [NCBI36] Chr7:7q32.3-36.3	pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1	copy number loss	See cases [RCV000052250]	Chr7:53985..159282531 [GRCh38] Chr7:53985..159075220 [GRCh37] Chr7:149068..158767981 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7q33-35(chr7:135414108-144140219)x1	copy number loss	See cases [RCV000054173]	Chr7:135414108..144140219 [GRCh38] Chr7:135098857..143837312 [GRCh37] Chr7:134749397..143468245 [NCBI36] Chr7:7q33-35	pathogenic
NM_001008225.2(CNOT4):c.-92-8056T>G	single nucleotide variant	Lung cancer [RCV000105639]	Chr7:135446479 [GRCh38] Chr7:135131227 [GRCh37] Chr7:7q33	uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1	copy number loss	See cases [RCV000135401]	Chr7:54185..159282390 [GRCh38] Chr7:54185..159075079 [GRCh37] Chr7:149268..158767840 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7q33-36.3(chr7:134666829-158591882)x1	copy number loss	See cases [RCV000138120]	Chr7:134666829..158591882 [GRCh38] Chr7:134351581..158384574 [GRCh37] Chr7:134002121..158077335 [NCBI36] Chr7:7q33-36.3	pathogenic
GRCh38/hg38 7q32.3-36.1(chr7:132023155-149309794)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]\|See cases [RCV000054172]	Chr7:132023155..149309794 [GRCh38] Chr7:131707914..149006885 [GRCh37] Chr7:131358454..148637818 [NCBI36] Chr7:7q32.3-36.1	pathogenic
GRCh38/hg38 7q33(chr7:135360779-135634426)x3	copy number gain	See cases [RCV000135163]	Chr7:135360779..135634426 [GRCh38] Chr7:135045531..135319174 [GRCh37] Chr7:134696071..134969714 [NCBI36] Chr7:7q33	likely benign
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3	copy number gain	See cases [RCV000136717]	Chr7:97419852..158923762 [GRCh38] Chr7:97049164..158716453 [GRCh37] Chr7:96887100..158409214 [NCBI36] Chr7:7q21.3-36.3	pathogenic
GRCh38/hg38 7q33-36.1(chr7:135017687-148807400)x1	copy number loss	See cases [RCV000138903]	Chr7:135017687..148807400 [GRCh38] Chr7:134702438..148504492 [GRCh37] Chr7:134352978..148135425 [NCBI36] Chr7:7q33-36.1	pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131228764-159335866)x3	copy number gain	See cases [RCV000142802]	Chr7:131228764..159335866 [GRCh38] Chr7:130913523..159128556 [GRCh37] Chr7:130564063..158821317 [NCBI36] Chr7:7q32.3-36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1	copy number loss	See cases [RCV000446044]	Chr7:43360..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3	copy number gain	See cases [RCV000138847]	Chr7:121863759..159335865 [GRCh38] Chr7:121503813..159128555 [GRCh37] Chr7:121291049..158821316 [NCBI36] Chr7:7q31.32-36.3	pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132444095-159335866)x3	copy number gain	See cases [RCV000139654]	Chr7:132444095..159335866 [GRCh38] Chr7:132128854..159128556 [GRCh37] Chr7:131779394..158821317 [NCBI36] Chr7:7q32.3-36.3	pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3	copy number gain	See cases [RCV000141413]	Chr7:115459015..159325817 [GRCh38] Chr7:115099069..159118507 [GRCh37] Chr7:114886305..158811268 [NCBI36] Chr7:7q31.2-36.3	pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131171478-159327017)x3	copy number gain	See cases [RCV000143754]	Chr7:131171478..159327017 [GRCh38] Chr7:130856237..159119707 [GRCh37] Chr7:130506777..158812468 [NCBI36] Chr7:7q32.3-36.3	pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132438072-159327017)x3	copy number gain	See cases [RCV000143707]	Chr7:132438072..159327017 [GRCh38] Chr7:132122831..159119707 [GRCh37] Chr7:131773371..158812468 [NCBI36] Chr7:7q32.3-36.3	pathogenic
TMEM106B-BRAF fusion	deletion	Pleomorphic xanthoastrocytoma [RCV000454357]	Chr7:12258147..140494267 [GRCh37] Chr7:7p21.3-q34	pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3	copy number gain	See cases [RCV000447709]	Chr7:98969247..159119707 [GRCh37] Chr7:7q22.1-36.3	pathogenic
GRCh37/hg19 7q32.3-34(chr7:131642114-139107211)x1	copy number loss	See cases [RCV000448552]	Chr7:131642114..139107211 [GRCh37] Chr7:7q32.3-34	pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128276078-159119707)x3	copy number gain	See cases [RCV000447956]	Chr7:128276078..159119707 [GRCh37] Chr7:7q32.1-36.3	pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128312450-159119220)	copy number gain	not provided [RCV000767558]	Chr7:128312450..159119220 [GRCh37] Chr7:7q32.1-36.3	pathogenic
GRCh37/hg19 7q33-36.3(chr7:133799185-159119707)x1	copy number loss	See cases [RCV000448836]	Chr7:133799185..159119707 [GRCh37] Chr7:7q33-36.3	pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358)x1	copy number loss	See cases [RCV000447722]	Chr7:127295698..139524358 [GRCh37] Chr7:7q32.1-34	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)	copy number gain	See cases [RCV000510686]	Chr7:43361..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3	copy number gain	See cases [RCV000511549]	Chr7:43361..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q33(chr7:134379624-135927947)x3	copy number gain	See cases [RCV000511199]	Chr7:134379624..135927947 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3	copy number gain	not provided [RCV000682911]	Chr7:98693388..159119707 [GRCh37] Chr7:7q22.1-36.3	pathogenic
NM_001190850.2(CNOT4):c.1874C>G (p.Ser625Cys)	single nucleotide variant	not specified [RCV004294549]	Chr7:135363153 [GRCh38] Chr7:135047905 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3	copy number gain	not provided [RCV000848126]	Chr7:10365..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q33(chr7:135035582-135130700)x1	copy number loss	not provided [RCV000846083]	Chr7:135035582..135130700 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q32.3-36.3(chr7:131414604-159126310)x1	copy number loss	See cases [RCV001007432]	Chr7:131414604..159126310 [GRCh37] Chr7:7q32.3-36.3	pathogenic
GRCh37/hg19 7q33(chr7:134648448-137942208)x1	copy number loss	not provided [RCV000849809]	Chr7:134648448..137942208 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q32.3-36.3(chr7:130592554-159119707)x3	copy number gain	not provided [RCV000849569]	Chr7:130592554..159119707 [GRCh37] Chr7:7q32.3-36.3	pathogenic
GRCh37/hg19 7q33-36.3(chr7:133851002-159119707)x3	copy number gain	not provided [RCV001834520]	Chr7:133851002..159119707 [GRCh37] Chr7:7q33-36.3	pathogenic
NC_000007.13:g.(?_130781014)_(150301047_?)del	deletion	not provided [RCV003116360]	Chr7:130781014..150301047 [GRCh37] Chr7:7q32.3-36.1	pathogenic
NM_001190850.2(CNOT4):c.2005G>A (p.Ala669Thr)	single nucleotide variant	not specified [RCV004312327]	Chr7:135363022 [GRCh38] Chr7:135047774 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q32.3-36.1(chr7:131779213-149042734)x1	copy number loss	not provided [RCV002472560]	Chr7:131779213..149042734 [GRCh37] Chr7:7q32.3-36.1	pathogenic
NM_001190850.2(CNOT4):c.2063C>A (p.Pro688Gln)	single nucleotide variant	not specified [RCV004094538]	Chr7:135362964 [GRCh38] Chr7:135047716 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1520G>C (p.Ser507Thr)	single nucleotide variant	not specified [RCV004209994]	Chr7:135394025 [GRCh38] Chr7:135078777 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.2039C>T (p.Pro680Leu)	single nucleotide variant	not specified [RCV004130360]	Chr7:135362988 [GRCh38] Chr7:135047740 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q31.31-33(chr7:120582003-137699953)x1	copy number loss	not specified [RCV003986721]	Chr7:120582003..137699953 [GRCh37] Chr7:7q31.31-33	pathogenic
NM_001190850.2(CNOT4):c.1469G>A (p.Ser490Asn)	single nucleotide variant	not specified [RCV004441993]	Chr7:135394076 [GRCh38] Chr7:135078828 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1945G>C (p.Ala649Pro)	single nucleotide variant	not specified [RCV004441995]	Chr7:135363082 [GRCh38] Chr7:135047834 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.767C>T (p.Thr256Met)	single nucleotide variant	not specified [RCV004441996]	Chr7:135410569 [GRCh38] Chr7:135095319 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.968G>A (p.Arg323Gln)	single nucleotide variant	not specified [RCV004441997]	Chr7:135395795 [GRCh38] Chr7:135080547 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1306C>G (p.Leu436Val)	single nucleotide variant	not specified [RCV004441991]	Chr7:135394239 [GRCh38] Chr7:135078991 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1333A>G (p.Thr445Ala)	single nucleotide variant	not specified [RCV004441992]	Chr7:135394212 [GRCh38] Chr7:135078964 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1709A>G (p.Asn570Ser)	single nucleotide variant	not specified [RCV004615491]	Chr7:135363985 [GRCh38] Chr7:135048737 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1660A>G (p.Lys554Glu)	single nucleotide variant	not specified [RCV004904996]	Chr7:135364034 [GRCh38] Chr7:135048786 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q33(chr7:133230189-137972605)x1	copy number loss	not provided [RCV000682906]	Chr7:133230189..137972605 [GRCh37] Chr7:7q33	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3	copy number gain	not provided [RCV000746280]	Chr7:44935..159126310 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
Single allele	complex	Renal transitional cell carcinoma [RCV000754611]	Chr7:129367205..140482957 [GRCh37] Chr7:7q32.2-34	likely pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3	copy number gain	not provided [RCV000746278]	Chr7:10704..159122532 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3	copy number gain	not provided [RCV001005994]	Chr7:109251060..159119707 [GRCh37] Chr7:7q31.1-36.3	pathogenic
Single allele	complex	Ring chromosome 7 [RCV002280646]	Chr7:43360..159119707 [GRCh37] Chr7:7p22.3-q36.3	pathogenic
GRCh37/hg19 7q33-35(chr7:133848099-145814115)x1	copy number loss	Hypertelorism [RCV001801200]	Chr7:133848099..145814115 [GRCh37] Chr7:7q33-35	pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358)	copy number loss	not specified [RCV002053727]	Chr7:127295698..139524358 [GRCh37] Chr7:7q32.1-34	pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1	copy number loss	See cases [RCV002287832]	Chr7:56604613..96692931 [GRCh37] Chr7:7p22.3-q36.3	uncertain significance
NM_001190850.2(CNOT4):c.956A>G (p.Asn319Ser)	single nucleotide variant	not specified [RCV004314355]	Chr7:135395807 [GRCh38] Chr7:135080559 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1789A>G (p.Ser597Gly)	single nucleotide variant	not specified [RCV004128924]	Chr7:135363905 [GRCh38] Chr7:135048657 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1285C>G (p.Pro429Ala)	single nucleotide variant	not specified [RCV004092893]	Chr7:135394260 [GRCh38] Chr7:135079012 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1375G>A (p.Ala459Thr)	single nucleotide variant	not specified [RCV004615488]	Chr7:135394170 [GRCh38] Chr7:135078922 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1408T>C (p.Ser470Pro)	single nucleotide variant	not specified [RCV004615489]	Chr7:135394137 [GRCh38] Chr7:135078889 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1414T>A (p.Leu472Met)	single nucleotide variant	not specified [RCV004615490]	Chr7:135394131 [GRCh38] Chr7:135078883 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1729T>G (p.Ser577Ala)	single nucleotide variant	not specified [RCV004615492]	Chr7:135363965 [GRCh38] Chr7:135048717 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1760C>T (p.Ala587Val)	single nucleotide variant	not specified [RCV004615493]	Chr7:135363934 [GRCh38] Chr7:135048686 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.7C>T (p.Arg3Cys)	single nucleotide variant	not specified [RCV004615499]	Chr7:135438325 [GRCh38] Chr7:135123073 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.991A>G (p.Thr331Ala)	single nucleotide variant	not specified [RCV004615498]	Chr7:135395772 [GRCh38] Chr7:135080524 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.2086C>A (p.Pro696Thr)	single nucleotide variant	not specified [RCV004615494]	Chr7:135362941 [GRCh38] Chr7:135047693 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1303T>C (p.Ser435Pro)	single nucleotide variant	not specified [RCV004615497]	Chr7:135394242 [GRCh38] Chr7:135078994 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q33(chr7:134938132-136712791)x1	copy number loss	not provided [RCV004819805]	Chr7:134938132..136712791 [GRCh37] Chr7:7q33	uncertain significance
GRCh37/hg19 7q31.32-36.1(chr7:122190535-149944340)x1	copy number loss	not provided [RCV004819354]	Chr7:122190535..149944340 [GRCh37] Chr7:7q31.32-36.1	pathogenic
NM_001190850.2(CNOT4):c.776T>C (p.Val259Ala)	single nucleotide variant	not specified [RCV004904991]	Chr7:135410560 [GRCh38] Chr7:135095310 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1324C>T (p.His442Tyr)	single nucleotide variant	not specified [RCV004904992]	Chr7:135394221 [GRCh38] Chr7:135078973 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.1703A>C (p.Asn568Thr)	single nucleotide variant	not specified [RCV004904993]	Chr7:135363991 [GRCh38] Chr7:135048743 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.2104A>C (p.Thr702Pro)	single nucleotide variant	not specified [RCV004904994]	Chr7:135362923 [GRCh38] Chr7:135047675 [GRCh37] Chr7:7q33	uncertain significance
NM_001190850.2(CNOT4):c.331G>C (p.Val111Leu)	single nucleotide variant	not specified [RCV004904995]	Chr7:135422197 [GRCh38] Chr7:135106946 [GRCh37] Chr7:7q33	uncertain significance

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
27	1091128	1091129	G	C	snv	Basenji (BJ001), Basenji (BJ002), Basenji (BJ006), Basenji (BJ004), Basenji (BJ005), Basenji (BJ003)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005636748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022411245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038460192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038460193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038512708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038512709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038512710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000010648 ⟹ ENSCAFP00000009871

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	1,089,808 - 1,091,627 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000039870 ⟹ ENSCAFP00000035782

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	1,089,808 - 1,091,627 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000043970 ⟹ ENSCAFP00000036167

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	1,089,828 - 1,111,129 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845031806 ⟹ ENSCAFP00845024886

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,088,357 - 1,235,362 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845031859 ⟹ ENSCAFP00845024924

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,088,485 - 1,094,075 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845031895 ⟹ ENSCAFP00845024945

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,091,279 - 1,094,075 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845031942 ⟹ ENSCAFP00845024978

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,091,279 - 1,093,098 (+)	Ensembl

RefSeq Acc Id:

XM_005636748 ⟹ XP_005636805

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	1,086,743 - 1,093,175 (+)	NCBI
Dog10K_Boxer_Tasha	27	45,157,542 - 45,164,017 (-)	NCBI

Sequence:

show sequence

CGTGCAGCACGCCTTCCGGGGATGGGAGTGTTTCCGGCGGAAGTGGCCGCGGCCGCGCCAATCGCCTTCGCCGAACAAAGCCGACTACGACTCCCAGTGTCCTCCGCGCCCGGGGGCGGGGAAGGGAA
CCGGAAGCCGGATGGAGAGCGGAACCTGGTTCGGATCCGAGATCGGGTTGATGGCTCAAGCTCTTCCGTCCGCACGAGGGTCCCACCTGGGAGAAGATCCCGGCCCTAGGGGAGGCCCAGACACGATG
GAGATCCACCCAGAGCCCGGGAAACCCTCAGACGACCAGAGTGCCAAGTGGGCAGCTGAGCCTTGAGTGAGCTCGGGCTCTAGAGTGCGTCAGGAAGGACTCCTTGGCAGAAGGTGACAGTCACGTGG
CTGTGCCCTAGGCTTATCCAGTGGGGCCCCTCCATGAACCTGCAGGTGCCCTGATGGAGCCCCAGCCTTGCCTTCGAAGCTTGGCTGAGGGCTTCCTGGCGGAGGAGCTGCGGCTCAATAATGAACTG
AGCCAACTGCAGTTCTCAGAGCCTGTGGGCATCATCTACAATCCTTTGGAGTATGCGTGGGAGCCACACCACAGCTACGTGACCCGCTACTGCCGGGGCCCCAAGGAAGTGCTCTTCCTGGGCATGAA
CCCCGGGCCCTTTGGCATGGCTCAGACTGGGGTGCCCTTCGGGGAAGTGAACGTAGTCCGGGACTGGTTGGGCATTGGGGGGACTGTGTCGACCCCGGCCCAAGAGCACCCGAAGCGCCCAGTGCTGG
GACTGGAGTGCCCTCAGTCAGAGGTGAGCGGTGCCCGGTTCTGGGGCTTTTTCCAGAACCTCTGTGGACAGCCCGAGGTCTTCTTCCGTCACTGTTTTGTCCACAATCTATGTCCTCTGCTCTTCTTG
GACCCCAACGGGCGCAACCTCACCCCCGCCGAGCTGCCGGCCAAGCAGCGAGAGCAGCTTCTTAGGGTCTGTGACGCAGCGCTCTTCCGGCAGGTGCAGCTGCTGGAGGTGCGGCTGGTGGTGGGCGT
GGGGCGGCTGGCGGAGCAGCGGGCGCGGAGGGCGCTGGCCGGCCTGCTGCCCGAGGTCAGGGTGGAGTGGCTCCTGCACCCCTCCCCCCGGAGCCCGCAGGCCAACAGGGGCTGGGAGGCAGCGGCCA
AGGACAGACTGAGTGAGCTGGGGCTGCTGCCGCTGCTCACGAGGTGAGGGCCCCTGCGGCCCCACGTCACCCGGGAGCCGGCAGAGGACCGCAGGCCCCGGGCCGGAGCAGCCAGGCCCCTGGGCTCC
CTGCTTGCTGGGACCTGCCGCCGCAGGTTTGACACTACTGCTTGCTCCCCCTTCCTTTGAGCGTTGTTGCCTCTGGTCCTGTGGTAAGAGCGGCACGGGGACTTGGCATCTGCTCACCTCACGGGTTC
CTCGGGCGCCTCTGGTCGGTGACGGTGGCCTGAACAGTGACCTGTGGAGCCGTCTTTGCTGTGATGGAGACCCTGCCAGGACCCCCACCCGTCCTCACAGAACAGCCTCCTTCAAGCTGAGCCTCTTC
CTCCGAGGGGCCGGAACAAAGCGAAAGACACGGATGTGAAGAGCGAACTTCTTACGGGAGACTGAGGCTGGATCAGAGGAAGAATTCAGCGTGGCGGGAGCCACGGGGCGGGCGGGCGGACACGGACC
AGAAGACCTGGATTTTCATCTCGGCTTTGAGACTTTATAACTTTGGATAAACTGAGGAACCTCTCCAAGCTGAGGATCCTCGTCTGTAAGAGGGGGATCCCCGCTCCGTGGCGTTGGTGGGGATTAAG
TGAGAAAACACTTGGAAGTGCCTTGGCGCAGTGCCTGGTGGGTGGGTGCTCCTTACACCTCTTGCTTTCTTTTCTCTTGGTGGGGGCATCACTACACCGCACTACAGAGGGCGCCCCCCACCCTGAAG
CTCTTGCTGGGTGAGGGGCAGATCCTCCCCCTACCAGGGGTGGACCAATAACTATGAAAAACCCAGCCTCTGGTTTTTCAGCCCAAGCATTAAAAACTCCTCAACCTGGGCAGCTGGGTGGCTTGGTT
CAGCGGCTGCCTTCAGCTCAGGTCGTGATCTTGGGCTCCCCACTCAATGGGGAGCCTGCTTCTCCTTCTTTCTTTGCCCCTCTCTCTTCTCTCTCTCTCTCATAAATAAAATCTTTAAAAGAAAAAAC
CCAGCTCCTAAACCCTTTTGTGTTGTCGTTTTCCCCCCTCCTGCACGTCTGGGATGGAAGTGGTAGCTTAGTTTTTCCCTTCTCTTACCTCTACTCCGTGTGCAAAGAGTTCCCCTGGGTATCTGGGG
AGATGACGTAAACAGGCCTCTGATTGTTTTACCAGAGCCTAAGGGGCTCCGTGGGTCTGTCTGCTACTGGGGCCCTGTGGGGAGCAGGTGATGGGTGGATGGAGCCTGCGGTCTCCACCTAACTCATT
TCTTAGGTCTGCTGGATGACTGGTTGGCGTGCCCTAAAACGGGGCTGGGAAGGTGAAGCAAACTGGTAATAGAGTGGGTCTTGGGACCCTCGTAATGAGGAACACATGGTTGGACTCCAGCTCCCAAG
ACAGGTCATCTTCAGCTTTCAGAATTCATAAGACTTTTAGTATAGGGGTGCCTGGCTGGCTCAGAGGAGCCTGAGACTGTAGATCTTGGGGTTTTGAGCTGGAGCCCCATGTGGGGTGTAGAAAAATA
TAAAAAGACTTTTTTTACTGTAAGTGTCCCCCATTTGTATAATAAAGAACTTGACTGGC

hide sequence

RefSeq Acc Id:

XM_038438002 ⟹ XP_038293930

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,088,341 - 1,094,647 (+)	NCBI

RefSeq Acc Id:

XM_038438003 ⟹ XP_038293931

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,088,178 - 1,094,647 (+)	NCBI

RefSeq Acc Id:

XM_038438004 ⟹ XP_038293932

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,088,341 - 1,094,647 (+)	NCBI

RefSeq Acc Id:

XM_038460192 ⟹ XP_038316120

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	27	45,157,542 - 45,163,854 (-)	NCBI

RefSeq Acc Id:

XM_038460193 ⟹ XP_038316121

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	27	45,157,542 - 45,163,854 (-)	NCBI

RefSeq Acc Id:

XM_038512708 ⟹ XP_038368636

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	1,107,174 - 1,113,490 (+)	NCBI

RefSeq Acc Id:

XM_038512709 ⟹ XP_038368637

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	1,107,011 - 1,113,490 (+)	NCBI

RefSeq Acc Id:

XM_038512710 ⟹ XP_038368638

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	1,107,174 - 1,113,490 (+)	NCBI

RefSeq Acc Id:

XM_038577840 ⟹ XP_038433768

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,561,546 - 45,567,855 (-)	NCBI

RefSeq Acc Id:

XM_038577841 ⟹ XP_038433769

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,561,546 - 45,568,018 (-)	NCBI

RefSeq Acc Id:

XM_038577842 ⟹ XP_038433770

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,561,546 - 45,567,855 (-)	NCBI

RefSeq Acc Id:

XM_038640460 ⟹ XP_038496388

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,088,508 - 1,094,825 (+)	NCBI

RefSeq Acc Id:

XM_038640461 ⟹ XP_038496389

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,088,345 - 1,094,825 (+)	NCBI

RefSeq Acc Id:

XM_038640462 ⟹ XP_038496390

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,088,508 - 1,094,825 (+)	NCBI


Protein RefSeqs	XP_005636805	(Get FASTA)	NCBI Sequence Viewer
	XP_038293930	(Get FASTA)	NCBI Sequence Viewer
	XP_038293931	(Get FASTA)	NCBI Sequence Viewer
	XP_038293932	(Get FASTA)	NCBI Sequence Viewer
	XP_038316120	(Get FASTA)	NCBI Sequence Viewer
	XP_038316121	(Get FASTA)	NCBI Sequence Viewer
	XP_038368636	(Get FASTA)	NCBI Sequence Viewer
	XP_038368637	(Get FASTA)	NCBI Sequence Viewer
	XP_038368638	(Get FASTA)	NCBI Sequence Viewer
	XP_038433768	(Get FASTA)	NCBI Sequence Viewer
	XP_038433769	(Get FASTA)	NCBI Sequence Viewer
	XP_038433770	(Get FASTA)	NCBI Sequence Viewer
	XP_038496388	(Get FASTA)	NCBI Sequence Viewer
	XP_038496389	(Get FASTA)	NCBI Sequence Viewer
	XP_038496390	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000009871.5
	ENSCAFP00000070385.1
	ENSCAFP00040032545.1
	ENSCAFP00845024886.1
	ENSCAFP00845024924.1
	ENSCAFP00845024945.1
	ENSCAFP00845024978.1

RefSeq Acc Id:	XP_005636805 ⟸ XM_005636748
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L7F4 (UniProtKB/TrEMBL), A0A8P0SBY2 (UniProtKB/TrEMBL), A0A8C0T6N9 (UniProtKB/TrEMBL), A0A8I3PCF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPQPCLRSLAEGFLAEELRLNNELSQLQFSEPVGIIYNPLEYAWEPHHSYVTRYCRGPKEVLFLGMNPGPFGMAQTGVPFGEVNVVRDWLGIGGTVSTPAQEHPKRPVLGLECPQSEVSGARFWGFF QNLCGQPEVFFRHCFVHNLCPLLFLDPNGRNLTPAELPAKQREQLLRVCDAALFRQVQLLEVRLVVGVGRLAEQRARRALAGLLPEVRVEWLLHPSPRSPQANRGWEAAAKDRLSELGLLPLLTR hide sequence

Ensembl Acc Id:

ENSCAFP00000035782 ⟸ ENSCAFT00000039870

Ensembl Acc Id:

ENSCAFP00000036167 ⟸ ENSCAFT00000043970

Ensembl Acc Id:

ENSCAFP00000009871 ⟸ ENSCAFT00000010648

RefSeq Acc Id:	XP_038368637 ⟸ XM_038512709
- Peptide Label:	isoform X1

Protein Domains

Uracil-DNA glycosylase-like

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006603	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040020187	UniProtKB/TrEMBL
	ENSCAFG00845017961	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000010648.6	UniProtKB/TrEMBL
	ENSCAFT00000108470.1	UniProtKB/TrEMBL
	ENSCAFT00040037342.1	UniProtKB/TrEMBL
	ENSCAFT00845031806.1	UniProtKB/TrEMBL
	ENSCAFT00845031859.1	UniProtKB/TrEMBL
	ENSCAFT00845031895.1	UniProtKB/TrEMBL
	ENSCAFT00845031942.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.470.10	UniProtKB/TrEMBL
InterPro	SMUG1	UniProtKB/TrEMBL
	Uracil-DNA_glycosylase-like	UniProtKB/TrEMBL
	Uracil-DNA_glycosylase-like_sf	UniProtKB/TrEMBL
KEGG Report	cfa:486497	UniProtKB/TrEMBL
NCBI Gene	SMUG1	ENTREZGENE
PANTHER	PTHR13235	UniProtKB/TrEMBL
	SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE	UniProtKB/TrEMBL
Pfam	UDG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52141	UniProtKB/TrEMBL
UniProt	A0A8C0L7F4	ENTREZGENE
	A0A8C0T6N9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P387_CANLF	UniProtKB/TrEMBL
	A0A8I3P592_CANLF	UniProtKB/TrEMBL
	A0A8I3PCF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S075_CANLF	UniProtKB/TrEMBL
	A0A8P0SBY2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TN14_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:46579	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar