PCDH15 (protocadherin related 15) - Rat Genome Database

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Gene: PCDH15 (protocadherin related 15) Canis lupus familiaris
Analyze
Symbol: PCDH15
Name: protocadherin related 15
RGD ID: 12403891
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN actin filament organization (ortholog); adult locomotory behavior (ortholog); adult walking behavior (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 23 (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protocadherin-15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12633,426,728 - 34,589,208 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2633,719,839 - 34,588,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2633,735,217 - 34,473,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02635,380,608 - 36,116,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2635,248,142 - 36,113,521 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12633,285,817 - 34,023,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02632,872,620 - 33,606,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02634,074,758 - 34,812,730 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH15DogDeafness  ISOPcdh15 (Rattus norvegicus)9068941DNA:nonsense more ...RGDPMID:19151506 and REF_RGD_ID:2306012
1 to 20 of 27 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH15Dogautistic disorder  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
PCDH15Dogautosomal recessive nonsyndromic deafness  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
PCDH15Dogautosomal recessive nonsyndromic deafness 23  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 23ClinVarPMID:11398101 more ...
PCDH15Dogfundus dystrophy  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:11398101 more ...
PCDH15Doggenetic disease  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:24033266 more ...
PCDH15DogHearing Loss  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24033266 more ...
PCDH15DogHirschsprung's disease  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Aganglionic megacolonClinVar 
PCDH15DogMeniere's disease  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Meniere diseaseClinVarPMID:25741868 and PMID:28492532
PCDH15Dognonsyndromic deafness  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Nonsyndromic DeafnessClinVarPMID:25741868 more ...
PCDH15DogNonsyndromic Sensorineural Hearing Loss  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Non-Syndromic Hereditary Hearing ImpairmentClinVarPMID:23804846 more ...
PCDH15Dogoptic atrophy  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Optic atrophyClinVarPMID:24033266 more ...
PCDH15Dogretinitis pigmentosa  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Retinitis pigmentosaClinVarPMID:17576681 more ...
PCDH15Dogretinitis pigmentosa-deafness syndrome  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Retinitis pigmentosa-deafness syndromeClinVarPMID:28492532
PCDH15Dogschizophrenia  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
PCDH15DogUsher syndrome  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11398101 more ...
PCDH15DogUsher syndrome  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11398101 more ...
PCDH15DogUsher syndrome type 1  ISOPCDH15 (Homo sapiens)8554872ClinVar Annotator: match by term: Usher syndrome type 1ClinVarPMID:11398101 more ...
PCDH15DogUsher Syndrome Type 1B  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11398101 more ...
PCDH15DogUsher Syndrome Type 1B  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11398101 more ...
PCDH15DogUsher Syndrome Type 1B  ISOPCDH15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11398101 more ...
1 to 20 of 27 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH15Dogcochlear disease  ISOPCDH15 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10978835
PCDH15DogDeafness  ISOPCDH15 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:10978835
PCDH15Dogsubstance-related disorder  ISOPCDH15 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20098672


Biological Process
1 to 20 of 41 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH15Dogactin filament organization acts_upstream_of_or_withinISOMGI:1855958 more ...9068941 PMID:11124469MGIPMID:11124469
PCDH15Dogadult locomotory behavior acts_upstream_of_or_withinISOMGI:1855958 and MGI:18563949068941 MGIMGI:76231
PCDH15Dogadult walking behavior acts_upstream_of_or_withinISOMGI:1855958 more ...9068941 PMID:11124469MGIPMID:11124469
PCDH15Dogauditory receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:21518779068941 PMID:10978835MGIPMID:10978835
PCDH15Dogauditory receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:18902199068941 PMID:15537665MGIPMID:15537665
PCDH15Dogauditory receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:1855958 more ...9068941 PMID:11124469MGIPMID:11124469
PCDH15Dogauditory receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:18563949068941 PMID:23217710MGIPMID:23217710
PCDH15Dogauditory receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:35056919068941 PMID:16887306MGIPMID:16887306
PCDH15Dogcell adhesion involved_inIEAInterPro:IPR020894 and InterPro:IPR030718150520179 InterProGO_REF:0000002
PCDH15Dogcell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
PCDH15Dogcell-cell adhesion involved_inIBAFB:FBgn0015609 more ...150520179 GO_CentralGO_REF:0000033
PCDH15Dogdetection of mechanical stimulus involved in equilibrioception acts_upstream_of_or_withinISOMGI:18563949068941 PMID:16481439MGIPMID:16481439
PCDH15Dogdetection of mechanical stimulus involved in sensory perception of sound acts_upstream_of_or_withinISOMGI:18563949068941 PMID:16481439MGIPMID:16481439
PCDH15Dogequilibrioception involved_inISOPCDH15 (Homo sapiens)9068941 PMID:16679490HGNC-UCLPMID:16679490
PCDH15Doghomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR002126150520179 InterProGO_REF:0000002
PCDH15Doginner ear auditory receptor cell differentiation acts_upstream_of_or_withinISOMGI:18563949068941 PMID:16481439MGIPMID:16481439
PCDH15Doginner ear development involved_inIEAInterPro:IPR030718150520179 InterProGO_REF:0000002
PCDH15Doginner ear development acts_upstream_of_or_withinISOMGI:21834699068941 PMID:15811708MGIPMID:15811708
PCDH15Doginner ear development acts_upstream_of_or_withinISOMGI:1855958 and MGI:21518779068941 PMID:10978835MGIPMID:10978835
PCDH15Doginner ear receptor cell stereocilium organization acts_upstream_of_or_withinISOMGI:18563949068941 PMID:18339676MGIPMID:18339676
1 to 20 of 41 rows

Cellular Component
1 to 12 of 12 rows

  
1 to 12 of 12 rows

Molecular Function
1 to 14 of 14 rows

  
1 to 14 of 14 rows

RGD Manual Annotations


  
PMID:22301074   PMID:30032202  



PCDH15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12633,426,728 - 34,589,208 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2633,719,839 - 34,588,017 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2633,735,217 - 34,473,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02635,380,608 - 36,116,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2635,248,142 - 36,113,521 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12633,285,817 - 34,023,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02632,872,620 - 33,606,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02634,074,758 - 34,812,730 (+)NCBIUU_Cfam_GSD_1.0
PCDH15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381053,802,771 - 55,627,942 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1053,802,771 - 55,627,942 (-)EnsemblGRCh38hg38GRCh38
GRCh371055,562,531 - 57,387,702 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361055,250,866 - 56,231,057 (-)NCBINCBI36Build 36hg18NCBI36
Build 341055,250,865 - 56,231,057NCBI
Celera1048,825,500 - 49,824,287 (-)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1049,544,130 - 50,545,244 (-)NCBIHuRef
CHM1_11055,844,015 - 56,842,749 (-)NCBICHM1_1
T2T-CHM13v2.01054,651,649 - 56,479,356 (-)NCBIT2T-CHM13v2.0
Pcdh15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391072,932,003 - 74,485,663 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1072,935,174 - 74,485,569 (+)EnsemblGRCm39 Ensembl
GRCm381073,096,277 - 74,649,831 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1073,099,342 - 74,649,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371073,284,615 - 74,112,482 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361073,667,153 - 74,076,383 (+)NCBIMGSCv36mm8
Celera1074,887,647 - 75,712,367 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1037.43NCBI
Pcdh15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,996,383 - 15,495,206 (-)NCBIGRCr8
mRatBN7.22013,997,094 - 15,496,446 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,963,565 - 15,494,719 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2014,715,022 - 15,411,013 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02014,069,984 - 14,766,014 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02014,542,552 - 15,238,564 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02014,952,213 - 15,334,745 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,952,213 - 15,334,745 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02017,138,580 - 17,521,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02018,712,995 - 19,021,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,507,804 - 15,240,479 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2015,459,406 - 16,139,466 (-)NCBICelera
Cytogenetic Map20p12-p11NCBI
Pcdh15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554258,428,680 - 8,899,028 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554258,443,523 - 9,203,177 (-)NCBIChiLan1.0ChiLan1.0
PCDH15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2866,121,235 - 67,901,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11066,126,557 - 67,907,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01050,452,290 - 52,236,538 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11052,661,035 - 54,456,043 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1052,666,969 - 53,536,611 (-)Ensemblpanpan1.1panPan2
Pcdh15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721373,974,985 - 74,439,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936910141,917 - 602,089 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936910233,800 - 602,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11495,530,168 - 96,388,032 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214103,931,584 - 104,873,398 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1975,642,985 - 77,415,370 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl976,726,627 - 77,398,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604836,564,791 - 38,363,879 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247919,195,902 - 9,990,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247919,042,311 - 9,992,341 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PCDH15
24667 total Variants



adipose tissue
alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
3 5 19 16 9 2 6 2 4 16 9 12 14 7


1 to 23 of 23 rows
RefSeq Transcripts XM_014108224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038512533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038512534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038512535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 23 of 23 rows

Ensembl Acc Id: ENSCAFT00000024635   ⟹   ENSCAFP00000022856
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,719,839 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000059774   ⟹   ENSCAFP00000052258
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,719,839 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000066276   ⟹   ENSCAFP00000063898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,852,201 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086357   ⟹   ENSCAFP00000055681
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,852,201 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000091778   ⟹   ENSCAFP00000058551
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,852,201 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000092503   ⟹   ENSCAFP00000055430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2633,852,201 - 34,588,017 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048749   ⟹   ENSCAFP00845038247
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,142 - 36,113,521 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845048979   ⟹   ENSCAFP00845038424
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,142 - 36,111,199 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049095   ⟹   ENSCAFP00845038518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,142 - 36,097,438 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049420   ⟹   ENSCAFP00845038776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,537 - 36,113,521 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049567   ⟹   ENSCAFP00845038884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,537 - 36,111,199 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049668   ⟹   ENSCAFP00845038957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,248,537 - 36,111,199 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049731   ⟹   ENSCAFP00845039001
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,249,297 - 36,097,438 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845049870   ⟹   ENSCAFP00845039110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2635,249,297 - 36,097,438 (+)Ensembl
RefSeq Acc Id: XM_038437661   ⟹   XP_038293589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02635,380,608 - 36,098,135 (+)NCBI
RefSeq Acc Id: XM_038437662   ⟹   XP_038293590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02635,380,608 - 36,111,479 (+)NCBI
RefSeq Acc Id: XM_038437663   ⟹   XP_038293591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02635,380,608 - 36,116,590 (+)NCBI
RefSeq Acc Id: XM_038459314   ⟹   XP_038315242
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2633,735,217 - 34,454,222 (+)NCBI
RefSeq Acc Id: XM_038459315   ⟹   XP_038315243
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2633,735,217 - 34,467,564 (+)NCBI
RefSeq Acc Id: XM_038459316   ⟹   XP_038315244
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2633,735,217 - 34,473,542 (+)NCBI
RefSeq Acc Id: XM_038512533   ⟹   XP_038368461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12633,285,817 - 34,005,056 (+)NCBI
RefSeq Acc Id: XM_038512534   ⟹   XP_038368462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12633,285,817 - 34,018,399 (+)NCBI
RefSeq Acc Id: XM_038512535   ⟹   XP_038368463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12633,285,817 - 34,023,503 (+)NCBI
RefSeq Acc Id: XM_038576024   ⟹   XP_038431952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02634,074,758 - 34,794,266 (+)NCBI
RefSeq Acc Id: XM_038576025   ⟹   XP_038431953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02634,074,758 - 34,812,730 (+)NCBI
RefSeq Acc Id: XM_038640233   ⟹   XP_038496161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02632,872,620 - 33,590,143 (+)NCBI
RefSeq Acc Id: XM_038640234   ⟹   XP_038496162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02632,872,620 - 33,603,486 (+)NCBI
RefSeq Acc Id: XM_038640235   ⟹   XP_038496163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02632,872,620 - 33,606,715 (+)NCBI
1 to 30 of 48 rows
Protein RefSeqs XP_038293589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038293590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038293591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315242 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315243 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038368461 (Get FASTA)   NCBI Sequence Viewer  
  XP_038368462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038368463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496163 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000022856.5
  ENSCAFP00000052258.2
  ENSCAFP00000055430.2
  ENSCAFP00000055681.2
  ENSCAFP00000058551.2
  ENSCAFP00000063898.2
  ENSCAFP00000075276.1
  ENSCAFP00030030075.1
  ENSCAFP00030030155.1
  ENSCAFP00030030792.1
  ENSCAFP00030030851.1
  ENSCAFP00030030913.1
  ENSCAFP00030030943.1
  ENSCAFP00030030976.1
  ENSCAFP00030031013.1
  ENSCAFP00040036904.1
1 to 30 of 48 rows
1 to 5 of 28 rows
1 to 5 of 28 rows
Ensembl Acc Id: ENSCAFP00000052258   ⟸   ENSCAFT00000059774
Ensembl Acc Id: ENSCAFP00000055430   ⟸   ENSCAFT00000092503
Ensembl Acc Id: ENSCAFP00000022856   ⟸   ENSCAFT00000024635
Ensembl Acc Id: ENSCAFP00000063898   ⟸   ENSCAFT00000066276
Ensembl Acc Id: ENSCAFP00000058551   ⟸   ENSCAFT00000091778
Cadherin



1 to 40 of 84 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000015538 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017001 UniProtKB/TrEMBL
  ENSCAFG00040022737 UniProtKB/TrEMBL
  ENSCAFG00845027622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024635.5 UniProtKB/TrEMBL
  ENSCAFT00000059774.2 UniProtKB/TrEMBL
  ENSCAFT00000066276.2 UniProtKB/TrEMBL
  ENSCAFT00000086357.2 UniProtKB/TrEMBL
  ENSCAFT00000091778.2 UniProtKB/TrEMBL
  ENSCAFT00000092503.2 UniProtKB/TrEMBL
  ENSCAFT00000097298.1 UniProtKB/TrEMBL
  ENSCAFT00030034487.1 UniProtKB/TrEMBL
  ENSCAFT00030034578.1 UniProtKB/TrEMBL
  ENSCAFT00030035303.1 UniProtKB/TrEMBL
  ENSCAFT00030035372.1 UniProtKB/TrEMBL
  ENSCAFT00030035439.1 UniProtKB/TrEMBL
  ENSCAFT00030035477.1 UniProtKB/TrEMBL
  ENSCAFT00030035514.1 UniProtKB/TrEMBL
  ENSCAFT00030035557.1 UniProtKB/TrEMBL
  ENSCAFT00040042308.1 UniProtKB/TrEMBL
  ENSCAFT00040042420.1 UniProtKB/TrEMBL
  ENSCAFT00040042480.1 UniProtKB/TrEMBL
  ENSCAFT00040042524.1 UniProtKB/TrEMBL
  ENSCAFT00040042534.1 UniProtKB/TrEMBL
  ENSCAFT00040042540.1 UniProtKB/TrEMBL
  ENSCAFT00040042554.1 UniProtKB/TrEMBL
  ENSCAFT00040042681.1 UniProtKB/TrEMBL
  ENSCAFT00845048749.1 UniProtKB/TrEMBL
  ENSCAFT00845048979 ENTREZGENE
  ENSCAFT00845048979.1 UniProtKB/TrEMBL
  ENSCAFT00845049095.1 UniProtKB/TrEMBL
  ENSCAFT00845049420 ENTREZGENE
  ENSCAFT00845049420.1 UniProtKB/TrEMBL
  ENSCAFT00845049567.1 UniProtKB/TrEMBL
  ENSCAFT00845049668.1 UniProtKB/TrEMBL
  ENSCAFT00845049731.1 UniProtKB/TrEMBL
  ENSCAFT00845049870 ENTREZGENE
  ENSCAFT00845049870.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.3430 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
1 to 40 of 84 rows