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Gene: PCDH15 (protocadherin related 15) Pan paniscus

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Symbol:

PCDH15

Name:

protocadherin related 15

RGD ID:

11759921

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN actin filament organization (ortholog); adult locomotory behavior (ortholog); adult walking behavior (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 23 (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); photoreceptor outer segment (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC100974065; protocadherin-15; protocadherin-15-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	66,121,235 - 67,901,123 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	66,126,557 - 67,907,741 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	50,452,290 - 52,236,538 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	52,661,035 - 54,456,043 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	52,666,969 - 53,536,611 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	Deafness		ISO	Pcdh15 (Rattus norvegicus)	9068941	DNA:nonsense more ...	RGD	PMID:19151506 and REF_RGD_ID:2306012

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	autistic disorder		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
PCDH15	Bonobo	autosomal recessive nonsyndromic deafness		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
PCDH15	Bonobo	autosomal recessive nonsyndromic deafness 23		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deafness and autosomal recessive 23	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	fundus dystrophy		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Retinal dystrophy	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	genetic disease		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:24033266 more ...
PCDH15	Bonobo	Hearing Loss		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:24033266 more ...
PCDH15	Bonobo	Hirschsprung's disease		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Aganglionic megacolon	ClinVar
PCDH15	Bonobo	Meniere's disease		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Meniere disease	ClinVar	PMID:25741868 and PMID:28492532
PCDH15	Bonobo	nonsyndromic deafness		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nonsyndromic Deafness	ClinVar	PMID:25741868 more ...
PCDH15	Bonobo	Nonsyndromic Sensorineural Hearing Loss		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Non-Syndromic Hereditary Hearing Impairment	ClinVar	PMID:23804846 more ...
PCDH15	Bonobo	optic atrophy		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Optic atrophy	ClinVar	PMID:24033266 more ...
PCDH15	Bonobo	retinitis pigmentosa		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa	ClinVar	PMID:17576681 more ...
PCDH15	Bonobo	retinitis pigmentosa-deafness syndrome		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa-deafness syndrome	ClinVar	PMID:28492532
PCDH15	Bonobo	schizophrenia		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311
PCDH15	Bonobo	Usher syndrome		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher syndrome		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher syndrome type 1		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Usher syndrome type 1	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa and congenital deafness	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome Type 1B		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher syndrome type 1D		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher syndrome type 1F		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher syndrome type 1G		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Usher syndrome type 1G	ClinVar	PMID:11398101 more ...
PCDH15	Bonobo	Usher Syndrome, Type ID/F		ISO	PCDH15 (Homo sapiens)	8554872	ClinVar Annotator: match by term: USHER SYNDROME more ...	ClinVar	PMID:15537665 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	cochlear disease		ISO	PCDH15 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:10978835
PCDH15	Bonobo	Deafness		ISO	PCDH15 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:10978835
PCDH15	Bonobo	substance-related disorder		ISO	PCDH15 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:20098672

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	autosomal recessive nonsyndromic deafness 23		ISO	PCDH15 (Homo sapiens)	7240710		OMIM
PCDH15	Bonobo	Usher syndrome type 1D		ISO	PCDH15 (Homo sapiens)	7240710		OMIM
PCDH15	Bonobo	Usher syndrome type 1F		ISO	PCDH15 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	actin filament organization	acts_upstream_of_or_within	ISO	MGI:1855958 more ...	9068941	PMID:11124469	MGI	PMID:11124469
PCDH15	Bonobo	adult locomotory behavior	acts_upstream_of_or_within	ISO	MGI:1855958 and MGI:1856394	9068941		MGI	MGI:76231
PCDH15	Bonobo	adult walking behavior	acts_upstream_of_or_within	ISO	MGI:1855958 more ...	9068941	PMID:11124469	MGI	PMID:11124469
PCDH15	Bonobo	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:23217710	MGI	PMID:23217710
PCDH15	Bonobo	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:3505691	9068941	PMID:16887306	MGI	PMID:16887306
PCDH15	Bonobo	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:10978835	MGI	PMID:10978835
PCDH15	Bonobo	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:1855958 more ...	9068941	PMID:11124469	MGI	PMID:11124469
PCDH15	Bonobo	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:1890219	9068941	PMID:15537665	MGI	PMID:15537665
PCDH15	Bonobo	cell adhesion	involved_in	IEA	InterPro:IPR020894 and InterPro:IPR030718	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	cell adhesion	involved_in	IEA	UniProtKB-KW:KW-0130	150520179		UniProt	GO_REF:0000043
PCDH15	Bonobo	cell-cell adhesion	involved_in	IEA	PANTHER:PTN009075283	150520179		TreeGrafter	GO_REF:0000118
PCDH15	Bonobo	detection of mechanical stimulus involved in equilibrioception	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	detection of mechanical stimulus involved in sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	equilibrioception	involved_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:16679490	HGNC-UCL	PMID:16679490
PCDH15	Bonobo	homophilic cell adhesion via plasma membrane adhesion molecules	involved_in	IEA	InterPro:IPR002126	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	inner ear auditory receptor cell differentiation	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	inner ear development	involved_in	IEA	InterPro:IPR030718	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	inner ear development	acts_upstream_of_or_within	ISO	MGI:1855958 and MGI:2151877	9068941	PMID:10978835	MGI	PMID:10978835
PCDH15	Bonobo	inner ear development	acts_upstream_of_or_within	ISO	MGI:2183469	9068941	PMID:15811708	MGI	PMID:15811708
PCDH15	Bonobo	inner ear receptor cell stereocilium organization	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:18339676	MGI	PMID:18339676
PCDH15	Bonobo	locomotory behavior	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:10430593 and PMID:10978835	MGI	PMID:10430593 and PMID:10978835
PCDH15	Bonobo	locomotory behavior	acts_upstream_of_or_within	ISO	MGI:2183469	9068941	PMID:15811708 and PMID:16962269	MGI	PMID:15811708 and PMID:16962269
PCDH15	Bonobo	morphogenesis of an epithelium	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:11138007	MGI	PMID:11138007
PCDH15	Bonobo	multicellular organism growth	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:10978835	MGI	PMID:10978835
PCDH15	Bonobo	non-motile cilium assembly	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	photoreceptor cell maintenance	involved_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:11398101	HGNC-UCL	PMID:11398101
PCDH15	Bonobo	response to calcium ion		ISO	Pcdh15 (Rattus norvegicus)	9068941		RGD	PMID:19008224 and REF_RGD_ID:9686142
PCDH15	Bonobo	righting reflex	acts_upstream_of_or_within	ISO	MGI:2183469	9068941	PMID:15811708	MGI	PMID:15811708
PCDH15	Bonobo	righting reflex	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:10978835	MGI	PMID:10978835
PCDH15	Bonobo	sensory perception of light stimulus	involved_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:11398101	HGNC-UCL	PMID:11398101
PCDH15	Bonobo	sensory perception of sound	involved_in	IEA	InterPro:IPR030718	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1856394	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:2151877	9068941	PMID:10430593 and PMID:10978835	MGI	PMID:10430593 and PMID:10978835
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1890219	9068941	PMID:15537665	MGI	PMID:15537665
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1856467	9068941	PMID:5093631 and PMID:9653653	MGI	PMID:5093631 and PMID:9653653
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1855958 more ...	9068941	PMID:11124469	MGI	PMID:11124469
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	Pcdh15 (Mus musculus)	9068941	PMID:14570705	MGI	PMID:14570705
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	PCDH15 (Homo sapiens)	9068941	PMID:15537665	MGI	PMID:15537665
PCDH15	Bonobo	sensory perception of sound	acts_upstream_of_or_within	ISO	MGI:1855958 and MGI:1856394	9068941		MGI	MGI:76231
PCDH15	Bonobo	startle response	acts_upstream_of_or_within	ISO	MGI:2183469	9068941	PMID:15811708	MGI	PMID:15811708
PCDH15	Bonobo	visual perception	acts_upstream_of_or_within	ISO	MGI:2448714	9068941	PMID:16799054	MGI	PMID:16799054

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	cell-cell junction	located_in	IEA	PANTHER:PTN009075283	150520179		TreeGrafter	GO_REF:0000118
PCDH15	Bonobo	cytoplasm	located_in	ISO	Pcdh15 (Mus musculus)	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	extracellular space	located_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:16369489	HGNC-UCL	PMID:16369489
PCDH15	Bonobo	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
PCDH15	Bonobo	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
PCDH15	Bonobo	membrane	located_in	IEA	InterPro:IPR002126 and InterPro:IPR015919	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	photoreceptor outer segment	located_in	ISO	Pcdh15 (Mus musculus)	9068941	PMID:14570705	MGI	PMID:14570705
PCDH15	Bonobo	photoreceptor outer segment	located_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:14570705	HGNC-UCL	PMID:14570705
PCDH15	Bonobo	plasma membrane	located_in	IEA	InterPro:IPR020894	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	stereocilium	located_in	IEA	InterPro:IPR030718	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	stereocilium	is_active_in	ISO	Pcdh15 (Mus musculus)	9068941	PMID:26754646	MGI	PMID:26754646
PCDH15	Bonobo	synapse	located_in	ISO	PCDH15 (Homo sapiens)	9068941	PMID:11487575	HGNC-UCL	PMID:11487575

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	calcium ion binding	enables	IEA	InterPro:IPR002126 and InterPro:IPR015919	150520179		InterPro	GO_REF:0000002
PCDH15	Bonobo	calcium ion binding	enables	IEA	PANTHER:PTN009075283	150520179		TreeGrafter	GO_REF:0000118
PCDH15	Bonobo	calcium ion binding	enables	IEA	UniRule:UR000413450	150520179		UniProt	GO_REF:0000104
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:Q99PF4-1	9068941	PMID:17805295 more ...	IntAct	PMID:17805295 more ...
PCDH15	Bonobo	protein binding	enables	ISO	PR:Q4KL25	9068941	PMID:23217710	MGI	PMID:23217710
PCDH15	Bonobo	protein binding	enables	ISO	PR:P97479 and PR:Q9ES64	9068941	PMID:16481439	MGI	PMID:16481439
PCDH15	Bonobo	protein binding	enables	ISO	PR:Q9ES64	9068941	PMID:15590703	MGI	PMID:15590703
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:Q9ES64 and UniProtKB:Q9ES64-3	9068941	PMID:15928608	IntAct	PMID:15928608
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:A1Y9I9	9068941	PMID:28504928	UniProt	PMID:28504928
PCDH15	Bonobo	protein binding		ISO	Hcn1 (Rattus norvegicus)	9068941		RGD	PMID:22948144 and REF_RGD_ID:9686140
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:Q9ES64	9068941	PMID:15590703	IntAct	PMID:15590703
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:Q8R4P4 and UniProtKB:Q8R4P5	9068941	PMID:25114259	UniProt	PMID:25114259
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:E2JF22	9068941	PMID:38228630	UniProt	PMID:38228630
PCDH15	Bonobo	protein binding	enables	ISO	UniProtKB:Q9ES64-3	9068941	PMID:16301216	IntAct	PMID:16301216

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCDH15	Bonobo	auditory mechanotransduction pathway		ISO	PCDH15 (Homo sapiens)	9068941		RGD	PMID:19804752 more ...
PCDH15	Bonobo	retinitis pigmentosa pathway		ISO	PCDH15 (Homo sapiens)	9068941		RGD	PMID:20212494 and REF_RGD_ID:8547536

PMID:22301074

PCDH15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	66,121,235 - 67,901,123 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	66,126,557 - 67,907,741 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	50,452,290 - 52,236,538 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	52,661,035 - 54,456,043 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	52,666,969 - 53,536,611 (-)	Ensembl	panpan1.1		panPan2

PCDH15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	53,802,771 - 55,627,942 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	53,802,771 - 55,627,942 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	55,562,531 - 57,387,702 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	55,250,866 - 56,231,057 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	55,250,865 - 56,231,057	NCBI
Celera	10	48,825,500 - 49,824,287 (-)	NCBI		Celera
Cytogenetic Map	10	q21.1	NCBI
HuRef	10	49,544,130 - 50,545,244 (-)	NCBI		HuRef
CHM1_1	10	55,844,015 - 56,842,749 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	54,651,649 - 56,479,356 (-)	NCBI		T2T-CHM13v2.0

Pcdh15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	72,932,003 - 74,485,663 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	72,935,174 - 74,485,569 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	73,096,277 - 74,649,831 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	73,099,342 - 74,649,737 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	73,284,615 - 74,112,482 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	73,667,153 - 74,076,383 (+)	NCBI		MGSCv36	mm8
Celera	10	74,887,647 - 75,712,367 (+)	NCBI		Celera
Cytogenetic Map	10	B5.3	NCBI
cM Map	10	37.43	NCBI

Pcdh15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,996,383 - 15,495,206 (-)	NCBI		GRCr8
mRatBN7.2	20	13,997,094 - 15,496,446 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	13,963,565 - 15,494,719 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	14,715,022 - 15,411,013 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	14,069,984 - 14,766,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	14,542,552 - 15,238,564 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	14,952,213 - 15,334,745 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	14,952,213 - 15,334,745 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	17,138,580 - 17,521,597 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	20	18,712,995 - 19,021,206 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	14,507,804 - 15,240,479 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	15,459,406 - 16,139,466 (-)	NCBI		Celera
Cytogenetic Map	20	p12-p11	NCBI

Pcdh15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	8,428,680 - 8,899,028 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	8,443,523 - 9,203,177 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCDH15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	33,426,728 - 34,589,208 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	33,719,839 - 34,588,017 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	33,735,217 - 34,473,542 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	35,380,608 - 36,116,590 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	35,248,142 - 36,113,521 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	33,285,817 - 34,023,503 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	32,872,620 - 33,606,715 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	34,074,758 - 34,812,730 (+)	NCBI		UU_Cfam_GSD_1.0

Pcdh15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	73,974,985 - 74,439,013 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936910	141,917 - 602,089 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936910	233,800 - 602,145 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCDH15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	95,530,168 - 96,388,032 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	103,931,584 - 104,873,398 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCDH15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	75,642,985 - 77,415,370 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	76,726,627 - 77,398,716 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	36,564,791 - 38,363,879 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcdh15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624791	9,195,902 - 9,990,131 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624791	9,042,311 - 9,992,341 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_024930507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024930508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024930515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034930589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055092816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057298896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000036200 ⟹ ENSPPAP00000013528

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,666,969 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036205 ⟹ ENSPPAP00000013533

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,666,969 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036223 ⟹ ENSPPAP00000013551

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,667,143 - 53,276,081 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036269 ⟹ ENSPPAP00000013596

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036272 ⟹ ENSPPAP00000013599

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036276 ⟹ ENSPPAP00000013603

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036279 ⟹ ENSPPAP00000013606

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036283 ⟹ ENSPPAP00000013610

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036289 ⟹ ENSPPAP00000013616

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000036292 ⟹ ENSPPAP00000013619

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	52,680,098 - 53,536,611 (-)	Ensembl

RefSeq Acc Id:

XM_055092816 ⟹ XP_054948791

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	66,121,235 - 67,901,123 (-)	NCBI
NHGRI_mPanPan1	10	66,126,557 - 67,907,741 (-)	NCBI

RefSeq Acc Id:

XM_057298896 ⟹ XP_057154879

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	66,132,048 - 67,113,035 (-)	NCBI
NHGRI_mPanPan1	10	66,137,370 - 67,118,357 (-)	NCBI


Protein RefSeqs	XP_054948791	(Get FASTA)	NCBI Sequence Viewer
	XP_057154879	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000013528.1
	ENSPPAP00000013533.1
	ENSPPAP00000013551.1
	ENSPPAP00000013596.1
	ENSPPAP00000013599.1
	ENSPPAP00000013603.1
	ENSPPAP00000013606.1
	ENSPPAP00000013610.1
	ENSPPAP00000013616.1
	ENSPPAP00000013619.1

Ensembl Acc Id:

ENSPPAP00000013533 ⟸ ENSPPAT00000036205

Ensembl Acc Id:

ENSPPAP00000013528 ⟸ ENSPPAT00000036200

Ensembl Acc Id:

ENSPPAP00000013551 ⟸ ENSPPAT00000036223

Ensembl Acc Id:

ENSPPAP00000013619 ⟸ ENSPPAT00000036292

Ensembl Acc Id:

ENSPPAP00000013616 ⟸ ENSPPAT00000036289

Protein Domains

Cadherin

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029642	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000036200.1	UniProtKB/TrEMBL
	ENSPPAT00000036205.1	UniProtKB/TrEMBL
	ENSPPAT00000036223.1	UniProtKB/TrEMBL
	ENSPPAT00000036269.1	UniProtKB/TrEMBL
	ENSPPAT00000036272.1	UniProtKB/TrEMBL
	ENSPPAT00000036276.1	UniProtKB/TrEMBL
	ENSPPAT00000036279.1	UniProtKB/TrEMBL
	ENSPPAT00000036283.1	UniProtKB/TrEMBL
	ENSPPAT00000036289.1	UniProtKB/TrEMBL
	ENSPPAT00000036292.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.3430	UniProtKB/TrEMBL
	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin-domain_protein	UniProtKB/TrEMBL
	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	EC_dom	UniProtKB/TrEMBL
	Protocadherin-15	UniProtKB/TrEMBL
NCBI Gene	PCDH15	ENTREZGENE
PANTHER	DESMOGLEIN FAMILY MEMBER	UniProtKB/TrEMBL
	NEURAL-CADHERIN	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	ECD	UniProtKB/TrEMBL
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A2R9A8J4_PANPA	UniProtKB/TrEMBL
	A0A2R9A8K8_PANPA	UniProtKB/TrEMBL
	A0A2R9A8L7_PANPA	UniProtKB/TrEMBL
	A0A2R9A9H2_PANPA	UniProtKB/TrEMBL
	A0A2R9A9M6_PANPA	UniProtKB/TrEMBL
	A0A2R9A9N7	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A9Q0_PANPA	UniProtKB/TrEMBL
	A0A2R9ADF0_PANPA	UniProtKB/TrEMBL
	A0A2R9ADF4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9ADL8_PANPA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-08	PCDH15	protocadherin related 15	LOC100974065	protocadherin-15-like	Data merged from RGD:11778123	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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