SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1) - Rat Genome Database

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Gene: SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1) Canis lupus familiaris
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Symbol: SMARCB1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
RGD ID: 12373886
Description: ENCODES a protein that exhibits DNA binding (inferred); identical protein binding (inferred); p53 binding (inferred); INVOLVED IN blastocyst development (inferred); blastocyst hatching (inferred); chromatin remodeling (inferred); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH agammaglobulinemia 2 (ortholog); atypical teratoid rhabdoid tumor (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,692,610 - 28,728,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,692,899 - 28,728,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,765,925 - 27,802,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,097,586 - 30,133,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,097,586 - 30,134,047 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,178,905 - 28,215,089 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,796,839 - 27,833,022 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,784,702 - 28,820,890 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
SMARCB1Dogclear cell renal cell carcinoma  ISOSMARCB1 (Homo sapiens)9068941mRNA and protein:decreased expression:kidney:RGDPMID:29218250 and REF_RGD_ID:155804290
SMARCB1Dogcolorectal adenocarcinoma disease_progressionISOSMARCB1 (Homo sapiens)9068941protein:decreased expression:colon and nucleusRGDPMID:27184481 and REF_RGD_ID:127285648
SMARCB1Dogepithelioid sarcoma  ISOSMARCB1 (Homo sapiens)9068941protein:decreased expression:epithelial cell:RGDPMID:19033866 and REF_RGD_ID:155804293
SMARCB1Doghepatocellular carcinoma disease_progressionISOSMARCB1 (Homo sapiens)9068941mRNA:decreased expression:liverRGDPMID:27111394 and REF_RGD_ID:127285647
SMARCB1Dogmeningioma  ISOSMARCB1 (Homo sapiens)9068941DNA:missense mutation and loss of heterozygosity:cds: c.143C>T (human)RGDPMID:22038540 and REF_RGD_ID:155804288
SMARCB1Dogovarian cyst susceptibilityISOVhl (Mus musculus)9068941 RGDPMID:29684361 and REF_RGD_ID:155804292
SMARCB1Dogrhabdoid cancer  ISOSMARCB1 (Homo sapiens)9068941protein:decreased expression:brain more ...RGDPMID:16528370 and REF_RGD_ID:155804291
SMARCB1Dogrhabdoid cancer  ISOSMARCB1 (Homo sapiens)9068941DNA:nonsense mutation more ...RGDPMID:9671307 and REF_RGD_ID:1599055
SMARCB1Dogsinonasal undifferentiated carcinoma  ISOSMARCB1 (Homo sapiens)9068941 RGDPMID:30120966 and REF_RGD_ID:127285653
SMARCB1Dogsynovial sarcoma  ISOSMARCB1 (Homo sapiens)9068941 RGDPMID:26520417 and REF_RGD_ID:11069485
SMARCB1Dogvestibular schwannomatosis  ISOSMARCB1 (Homo sapiens)9068941DNA more ...RGDPMID:28365909 and REF_RGD_ID:151708708
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Original Reference(s)
SMARCB1Dogagammaglobulinemia 2  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Agammaglobulinemia 2 and autosomal recessiveClinVarPMID:28492532
SMARCB1Dogatypical teratoid rhabdoid tumor  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Teratoid tumor and atypicalClinVarPMID:25741868
SMARCB1Dogautism spectrum disorder  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868 and PMID:28492532
SMARCB1DogCentral Nervous System Neoplasms  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neoplasm of the central nervous systemClinVarPMID:25741868
SMARCB1DogCoffin-Siris syndrome  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Coffin-Siris syndromeClinVarPMID:10521299 more ...
SMARCB1DogCoffin-Siris syndrome 3  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: COFFIN-SIRIS SYNDROME 3ClinVarPMID:11161377 more ...
SMARCB1DogDevelopmental Disease  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental disorderClinVarPMID:10521299 more ...
SMARCB1Dogepilepsy  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVar 
SMARCB1Doggenetic disease  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:18285426 more ...
SMARCB1DogHereditary Neoplastic Syndromes  ISOSMARCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10521299 more ...
SMARCB1DogHereditary Neoplastic Syndromes  ISOSMARCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10521299 more ...
SMARCB1DogHereditary Neoplastic Syndromes  ISOSMARCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10521299 more ...
SMARCB1Dogintellectual disability  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
SMARCB1DogNATURAL KILLER CELL ENTEROPATHY  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: NK-cell enteropathyClinVar 
SMARCB1Dogneurilemmoma  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: SchwannomaClinVarPMID:18647326 more ...
SMARCB1Dogovarian cancer  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Ovarian cancerClinVarPMID:25741868 and PMID:28492532
SMARCB1Dogrhabdoid tumor predisposition syndrome  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Rhabdoid tumor predisposition syndromeClinVarPMID:28492532
SMARCB1Dogrhabdoid tumor predisposition syndrome 1  ISOSMARCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10521299 more ...
SMARCB1Dogrhabdoid tumor predisposition syndrome 2  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Rhabdoid tumor predisposition syndrome 2ClinVarPMID:25741868 and PMID:28492532
SMARCB1Dogschizophrenia  ISOSMARCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
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Original Reference(s)
SMARCB1Dogrhabdoid cancer  ISOSMARCB1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25009291 and PMID:26343384


Biological Process
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Original Reference(s)
SMARCB1Dogblastocyst development acts_upstream_of_or_withinIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1Dogblastocyst hatching acts_upstream_of_or_withinIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1Dogchromatin remodeling involved_inIEAInterPro:IPR006939 and InterPro:IPR017393150520179 InterProGO_REF:0000002
SMARCB1Dogchromatin remodeling involved_inIBAPANTHER:PTN004120562 more ...150520179 GO_CentralGO_REF:0000033
SMARCB1Dogchromatin remodeling involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Doghepatocyte differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1Dognegative regulation of cell population proliferation acts_upstream_of_or_withinIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1Dognucleosome disassembly involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogpositive regulation by host of viral transcription involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogpositive regulation of glucose mediated signaling pathway involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogpositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogpositive regulation of transcription of nucleolar large rRNA by RNA polymerase I involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogregulation of transcription by RNA polymerase II involved_inIBACGD:CAL0000195495 more ...150520179 GO_CentralGO_REF:0000033
SMARCB1DogRNA polymerase I preinitiation complex assembly involved_inIEAGO:0001164150520179 GOCGO_REF:0000108
SMARCB1Dogsingle stranded viral RNA replication via double stranded DNA intermediate acts_upstream_of_or_withinIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogtranscription initiation-coupled chromatin remodeling involved_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
SMARCB1Dogbrahma complex part_ofIBAFB:FBgn0011715 and PANTHER:PTN000001220150520179 GO_CentralGO_REF:0000033
SMARCB1Dogchromatin  ISOSmarcb1 (Rattus norvegicus)9068941 RGDPMID:29398003 and REF_RGD_ID:127285654
SMARCB1Dogfibrillar center located_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Doggerm cell nucleus located_inIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1DognBAF complex part_ofIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1DognBAF complex part_ofIBAMGI:1328366 and PANTHER:PTN000001220150520179 GO_CentralGO_REF:0000033
SMARCB1DognpBAF complex part_ofIBAMGI:1328366 and PANTHER:PTN000001220150520179 GO_CentralGO_REF:0000033
SMARCB1DognpBAF complex part_ofIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
SMARCB1Dognuclear chromosome located_inIEAInterPro:IPR006939150520179 InterProGO_REF:0000002
SMARCB1Dognucleolus located_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dognucleoplasm located_inIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dognucleus located_inIEAUniRule:UR001079785150520179 UniProtGO_REF:0000104
SMARCB1Dognucleus is_active_inIBACGD:CAL0000186865 more ...150520179 GO_CentralGO_REF:0000033
SMARCB1Dognucleus located_inIEAUniProtKB:Q12824 more ...150520179 EnsemblGO_REF:0000107
SMARCB1Dognucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
SMARCB1Dognucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
SMARCB1DogSWI/SNF complex part_ofIEAUniProtKB:Q12824 more ...150520179 EnsemblGO_REF:0000107
SMARCB1DogXY body located_inIEAUniProtKB:Q9Z0H3 and ensembl:ENSMUSP00000000925150520179 EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
SMARCB1DogDNA binding enablesIEAUniRule:UR001079785150520179 UniProtGO_REF:0000104
SMARCB1DogDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
SMARCB1DogDNA binding enablesIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogidentical protein binding enablesIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogp53 binding enablesIEAUniProtKB:Q12824 and ensembl:ENSP00000494049150520179 EnsemblGO_REF:0000107
SMARCB1Dogprotein binding enablesISOUniProtKB:P067899068941 PMID:10365963IntActPMID:10365963
SMARCB1Dogprotein binding enablesISOUniProtKB:Q8BVN99068941 PMID:16787967UniProtPMID:16787967
SMARCB1Dogprotein binding enablesISOUniProtKB:P974969068941 PMID:17255092IntActPMID:17255092
SMARCB1Dogprotein binding enablesISOUniProtKB:P04585-PRO_00000424479068941 PMID:14963118IntActPMID:14963118
SMARCB1Dogprotein binding enablesISOPR:Q810L39068941 PMID:22285184MGIPMID:22285184
SMARCB1Dogprotein binding enablesISOUniProtKB:P08670 and UniProtKB:P141369068941 PMID:27229929IntActPMID:27229929
SMARCB1Dogprotein binding enablesISOUniProtKB:Q8TAQ2-29068941 PMID:28514442IntActPMID:28514442
SMARCB1Dogprotein binding enablesISOUniProtKB:P277979068941 PMID:21900206IntActPMID:21900206
SMARCB1Dogprotein binding enablesISOUniProtKB:P51532 and UniProtKB:Q8K1P79068941 PMID:23540691IntActPMID:23540691
SMARCB1Dogprotein binding enablesISOUniProtKB:G5E9A7 more ...9068941 PMID:32814053IntActPMID:32814053
SMARCB1Dogprotein binding enablesISOUniProtKB:O14964 more ...9068941 PMID:32296183IntActPMID:32296183
SMARCB1Dogprotein binding enablesISOUniProtKB:O60814 more ...9068941 PMID:31759698IntActPMID:31759698
SMARCB1Dogprotein binding enablesISOUniProtKB:P27797 more ...9068941 PMID:30108113IntActPMID:30108113
SMARCB1Dogprotein binding enablesISOMGI:1935147 more ...9068941 PMID:16287714MGIPMID:16287714
SMARCB1Dogprotein binding enablesISOUniProtKB:Q034689068941 PMID:24874740UniProtPMID:24874740
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RGD Manual Annotations


  
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Original Reference(s)
SMARCB1DogSWI/SNF family mediated chromatin remodeling pathway  ISOSMARCB1 (Homo sapiens)9068941 RGDPMID:21358755 more ...
PMID:22301074   PMID:30032202  



SMARCB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,692,610 - 28,728,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,692,899 - 28,728,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,765,925 - 27,802,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02630,097,586 - 30,133,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2630,097,586 - 30,134,047 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12628,178,905 - 28,215,089 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,796,839 - 27,833,022 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,784,702 - 28,820,890 (-)NCBIUU_Cfam_GSD_1.0
SMARCB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,786,966 - 23,838,009 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,786,931 - 23,838,009 (+)EnsemblGRCh38hg38GRCh38
GRCh372224,129,153 - 24,180,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,459,150 - 22,506,705 (+)NCBINCBI36Build 36hg18NCBI36
Build 342222,453,703 - 22,501,258NCBI
Celera227,968,247 - 8,015,764 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,117,207 - 7,164,626 (+)NCBIHuRef
CHM1_12224,141,393 - 24,188,920 (+)NCBICHM1_1
T2T-CHM13v2.02224,234,168 - 24,285,193 (+)NCBIT2T-CHM13v2.0
Smarcb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,732,603 - 75,757,448 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,732,603 - 75,757,451 (-)EnsemblGRCm39 Ensembl
GRCm381075,896,769 - 75,921,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,896,769 - 75,921,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,359,514 - 75,384,359 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,340,491 - 75,365,304 (-)NCBIMGSCv36mm8
Celera1076,941,458 - 76,966,299 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.61NCBI
Smarcb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,740,105 - 12,763,054 (+)NCBIGRCr8
mRatBN7.22012,741,164 - 12,763,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,741,477 - 12,763,620 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,448,137 - 13,470,241 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,809,058 - 12,831,162 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,280,851 - 13,302,955 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,679,955 - 13,702,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,680,716 - 13,704,931 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,836,242 - 15,858,384 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42013,140,331 - 13,162,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12013,140,557 - 13,162,664 (+)NCBI
Celera2014,232,795 - 14,254,901 (+)NCBICelera
Cytogenetic Map20p12NCBI
Smarcb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,415,839 - 8,457,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,420,263 - 8,457,105 (-)NCBIChiLan1.0ChiLan1.0
SMARCB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,515,250 - 33,565,294 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,255,101 - 36,301,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,542,764 - 4,589,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,627,950 - 22,673,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2222,627,982 - 22,673,921 (+)Ensemblpanpan1.1panPan2
Smarcb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,445,150 - 141,477,819 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366191,275,362 - 1,308,913 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366191,276,239 - 1,308,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,874,984 - 49,906,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,874,981 - 49,906,043 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,317,251 - 53,348,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,902,985 - 6,945,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,902,951 - 6,944,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666100428,050 - 470,045 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,361,260 - 10,396,719 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,362,149 - 10,396,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in SMARCB1
445 total Variants



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10



Ensembl Acc Id: ENSCAFT00000022399   ⟹   ENSCAFP00000020798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2628,692,899 - 28,728,783 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000071807   ⟹   ENSCAFP00000058131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2628,692,899 - 28,728,783 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045425   ⟹   ENSCAFP00845035628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2630,097,586 - 30,134,047 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045508   ⟹   ENSCAFP00845035698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2630,097,586 - 30,134,047 (-)Ensembl
RefSeq Acc Id: XM_038437448   ⟹   XP_038293376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02630,097,586 - 30,133,944 (-)NCBI
RefSeq Acc Id: XM_038437449   ⟹   XP_038293377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02630,097,586 - 30,133,966 (-)NCBI
RefSeq Acc Id: XM_038512321   ⟹   XP_038368249
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12628,178,905 - 28,215,067 (-)NCBI
RefSeq Acc Id: XM_038512322   ⟹   XP_038368250
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12628,178,905 - 28,215,089 (-)NCBI
RefSeq Acc Id: XM_038575822   ⟹   XP_038431750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02628,784,702 - 28,820,868 (-)NCBI
RefSeq Acc Id: XM_038575823   ⟹   XP_038431751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02628,784,702 - 28,820,890 (-)NCBI
RefSeq Acc Id: XM_038640035   ⟹   XP_038495963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02627,796,839 - 27,833,000 (-)NCBI
RefSeq Acc Id: XM_038640036   ⟹   XP_038495964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02627,796,839 - 27,833,022 (-)NCBI
RefSeq Acc Id: XM_543533   ⟹   XP_543533
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12628,692,610 - 28,728,778 (-)NCBI
Dog10K_Boxer_Tasha2627,765,925 - 27,802,103 (-)NCBI
Sequence:
RefSeq Acc Id: XM_852177   ⟹   XP_857270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12628,692,610 - 28,728,728 (-)NCBI
Dog10K_Boxer_Tasha2627,765,925 - 27,802,081 (-)NCBI
Sequence:
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: XP_857270   ⟸   XM_852177
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PI49 (UniProtKB/TrEMBL),   A0A8I3PW02 (UniProtKB/TrEMBL),   A0A8C0T9N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_543533   ⟸   XM_543533
- Peptide Label: isoform X2
- UniProtKB: A0A8C0K2V5 (UniProtKB/TrEMBL),   A0A8C0T9N9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000020798   ⟸   ENSCAFT00000022399
Ensembl Acc Id: ENSCAFP00000058131   ⟸   ENSCAFT00000071807
RefSeq Acc Id: XP_038368250   ⟸   XM_038512322
- Peptide Label: isoform X2


1 to 32 of 32 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000014105 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030023050 UniProtKB/TrEMBL
  ENSCAFG00040020237 UniProtKB/TrEMBL
  ENSCAFG00845025724 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022399.5 UniProtKB/TrEMBL
  ENSCAFT00000071807.2 UniProtKB/TrEMBL
  ENSCAFT00000095836.1 UniProtKB/TrEMBL
  ENSCAFT00030042434.1 UniProtKB/TrEMBL
  ENSCAFT00030042465.1 UniProtKB/TrEMBL
  ENSCAFT00040037461.1 UniProtKB/TrEMBL
  ENSCAFT00040037498.1 UniProtKB/TrEMBL
  ENSCAFT00040037526.1 UniProtKB/TrEMBL
  ENSCAFT00845045425 ENTREZGENE
  ENSCAFT00845045425.1 UniProtKB/TrEMBL
  ENSCAFT00845045508.1 UniProtKB/TrEMBL
InterPro INI1_DNA-bd UniProtKB/TrEMBL
  Sfh1/SNF5 UniProtKB/TrEMBL
  SNF5 UniProtKB/TrEMBL
NCBI Gene SMARCB1 ENTREZGENE
PANTHER SNF5 UniProtKB/TrEMBL
Pfam INI1_DNA-bd UniProtKB/TrEMBL
  SNF5 UniProtKB/TrEMBL
PIRSF SWI_SNF UniProtKB/TrEMBL
UniProt A0A8C0K2V5 ENTREZGENE
  A0A8C0PI49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T920_CANLF UniProtKB/TrEMBL
  A0A8C0T9N9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z2Y3_CANLF UniProtKB/TrEMBL
  A0A8I3PS18_CANLF UniProtKB/TrEMBL
  A0A8I3PW02 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0TLM0 UniProtKB/TrEMBL
VGNC ID VGNC:46534 ENTREZGENE
1 to 32 of 32 rows