RPS10 (ribosomal protein S10) - Rat Genome Database

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Gene: RPS10 (ribosomal protein S10) Canis lupus familiaris
Analyze
Symbol: RPS10
Name: ribosomal protein S10
RGD ID: 12359757
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); tRNA binding (ortholog); INVOLVED IN ribosomal small subunit assembly (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 9 (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S10; small ribosomal subunit protein eS10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,713,984 - 3,720,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,713,980 - 3,719,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha123,729,785 - 3,735,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,050,973 - 4,057,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,050,969 - 4,056,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1123,712,937 - 3,719,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,794,250 - 3,800,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,893,184 - 3,899,342 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RPS10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,713,984 - 3,720,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,713,980 - 3,719,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha123,729,785 - 3,735,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,050,973 - 4,057,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,050,969 - 4,056,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1123,712,937 - 3,719,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,794,250 - 3,800,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,893,184 - 3,899,342 (-)NCBIUU_Cfam_GSD_1.0
RPS10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,417,454 - 34,426,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,417,454 - 34,426,069 (-)EnsemblGRCh38hg38GRCh38
GRCh37634,385,231 - 34,393,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,493,209 - 34,501,854 (-)NCBINCBI36Build 36hg18NCBI36
Build 34634,493,210 - 34,501,830NCBI
Celera635,939,570 - 35,948,220 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,107,972 - 34,116,617 (-)NCBIHuRef
CHM1_1634,388,245 - 34,396,900 (-)NCBICHM1_1
T2T-CHM13v2.0634,241,303 - 34,249,921 (-)NCBIT2T-CHM13v2.0
Rps10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,849,389 - 27,854,218 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,849,392 - 27,855,643 (-)EnsemblGRCm39 Ensembl
GRCm381727,630,415 - 27,635,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,630,418 - 27,636,669 (-)EnsemblGRCm38mm10GRCm38
MGSCv371727,767,374 - 27,772,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,358,018 - 27,362,831 (-)NCBIMGSCv36mm8
Celera1728,182,398 - 28,187,208 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.59NCBI
Rps10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,696,135 - 5,700,863 (-)NCBIGRCr8
mRatBN7.2205,694,313 - 5,698,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,030,876 - 72,031,440 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl205,694,313 - 5,699,044 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl656,669,103 - 56,669,600 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx206,406,979 - 6,411,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,768,746 - 5,773,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,248,401 - 6,253,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,215,762 - 7,220,331 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,215,774 - 7,219,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,418,116 - 9,422,685 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,849,327 - 5,853,893 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,849,544 - 5,854,121 (-)NCBI
Celera207,257,606 - 7,262,175 (-)NCBICelera
Cytogenetic Map20p12NCBI
Rps10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,600,246 - 2,604,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,600,219 - 2,604,821 (-)NCBIChiLan1.0ChiLan1.0
LOC100973697
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2548,888,359 - 48,897,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1644,755,748 - 44,764,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0633,982,735 - 33,991,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,083,552 - 35,092,231 (-)NCBIpanpan1.1PanPan1.1panPan2
Rps10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,309,293 - 39,315,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,646,153 - 24,651,211 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,645,235 - 24,650,940 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,435,150 - 30,442,886 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,435,146 - 30,442,791 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,109,882 - 35,117,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,668,265 - 37,676,789 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604434,338,127 - 34,346,697 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,774,201 - 22,778,248 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475422,773,327 - 22,777,867 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS10
93 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000001879   ⟹   ENSCAFP00000001730
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl123,713,980 - 3,719,301 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000087632   ⟹   ENSCAFP00000060875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl123,714,456 - 3,719,780 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845047293   ⟹   ENSCAFP00845037116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl124,050,969 - 4,056,291 (-)Ensembl
RefSeq Acc Id: NM_001252045   ⟹   NP_001238974
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1123,713,984 - 3,720,149 (-)NCBI
Dog10K_Boxer_Tasha123,729,785 - 3,735,949 (-)NCBI
ROS_Cfam_1.0124,050,973 - 4,057,139 (-)NCBI
UMICH_Zoey_3.1123,712,937 - 3,719,062 (-)NCBI
UNSW_CanFamBas_1.0123,794,250 - 3,800,402 (-)NCBI
UU_Cfam_GSD_1.0123,893,184 - 3,899,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038682728   ⟹   XP_038538656
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,050,973 - 4,057,075 (-)NCBI
RefSeq Acc Id: NP_001238974   ⟸   NM_001252045
- UniProtKB: A0A8C0M508 (UniProtKB/TrEMBL),   A0A8C0K038 (UniProtKB/TrEMBL),   A0A8I3PQS5 (UniProtKB/TrEMBL),   A0A8C0PIU9 (UniProtKB/TrEMBL),   A0A8I3PC62 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000001730   ⟸   ENSCAFT00000001879
Ensembl Acc Id: ENSCAFP00000060875   ⟸   ENSCAFT00000087632
RefSeq Acc Id: XP_038538656   ⟸   XM_038682728
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M508 (UniProtKB/TrEMBL),   A0A8C0K038 (UniProtKB/TrEMBL),   A0A8I3PQS5 (UniProtKB/TrEMBL),   A0A8C0PIU9 (UniProtKB/TrEMBL),   A0A8I3PC62 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845037116   ⟸   ENSCAFT00845047293
Protein Domains
Plectin/eS10 N-terminal

Promoters
RGD ID:13685386
Promoter ID:EPDNEW_C3456
Type:initiation region
Name:RPS10_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1123,720,163 - 3,720,223EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001214 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000008935 UniProtKB/TrEMBL
  ENSCAFG00000011435 UniProtKB/TrEMBL
  ENSCAFG00030003971 UniProtKB/TrEMBL
  ENSCAFG00030019678 UniProtKB/TrEMBL
  ENSCAFG00030025093 UniProtKB/TrEMBL
  ENSCAFG00040011616 UniProtKB/TrEMBL
  ENSCAFG00040018516 UniProtKB/TrEMBL
  ENSCAFG00040020219 UniProtKB/TrEMBL
  ENSCAFG00845018666 UniProtKB/TrEMBL
  ENSCAFG00845026833 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845027106 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001879.5 UniProtKB/TrEMBL
  ENSCAFT00000014195.4 UniProtKB/TrEMBL
  ENSCAFT00000018149.5 UniProtKB/TrEMBL
  ENSCAFT00030007330.1 UniProtKB/TrEMBL
  ENSCAFT00030036134.1 UniProtKB/TrEMBL
  ENSCAFT00030046292.1 UniProtKB/TrEMBL
  ENSCAFT00040021453.1 UniProtKB/TrEMBL
  ENSCAFT00040021507.1 UniProtKB/TrEMBL
  ENSCAFT00040034202.1 UniProtKB/TrEMBL
  ENSCAFT00040037386.1 UniProtKB/TrEMBL
  ENSCAFT00845032990.1 UniProtKB/TrEMBL
  ENSCAFT00845047293 ENTREZGENE
  ENSCAFT00845047293.1 UniProtKB/TrEMBL
  ENSCAFT00845047746.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Rps10 UniProtKB/TrEMBL
  S10_plectin_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report cfa:474877 UniProtKB/TrEMBL
NCBI Gene RPS10 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S10 UniProtKB/TrEMBL
  PTHR12146 UniProtKB/TrEMBL
Pfam S10_plectin UniProtKB/TrEMBL
UniProt A0A8C0K038 ENTREZGENE
  A0A8C0M508 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PIU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SCC0_CANLF UniProtKB/TrEMBL
  A0A8I3PC62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQS5 ENTREZGENE, UniProtKB/TrEMBL