LDB3 (LIM domain binding 3) - Rat Genome Database

LDB3 (LIM domain binding 3) - Rat Genome Database

Submit Data | Help | Video Tutorials | News | Publications | Download | REST API | Citing RGD | Contact

Advanced Search (OLGA)

Gene: LDB3 (LIM domain binding 3) Canis lupus familiaris

Subscribe to Updates

Symbol:

LDB3

Name:

LIM domain binding 3

RGD ID:

12271705

Description:

ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN sarcomere organization (inferred); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); congenital myopathy (ortholog); FOUND IN Z disc (ortholog)

Type:

protein-coding

RefSeq Status:

Previously known as:

LIM domain-binding protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LDB3 (LIM domain binding 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ldb3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ldb3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ldb3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LDB3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ldb3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LDB3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LDB3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ldb3 (LIM domain binding 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	34,367,155 - 34,421,992 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	34,358,600 - 34,415,382 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	34,727,065 - 34,783,874 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,781,382 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	34,573,067 - 34,629,852 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	34,742,332 - 34,799,090 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	35,247,342 - 35,304,143 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	congenital structural myopathy		ISO	Ldb3 (Mus musculus)	9068941		RGD	PMID:11696561 and REF_RGD_ID:1581815
LDB3	Dog	dilated cardiomyopathy	no_association	ISO	LDB3 (Homo sapiens)	9068941	DNA:missense mutation: :p.D117N (human)	RGD	PMID:26419279 and REF_RGD_ID:11527732
LDB3	Dog	distal myopathy		ISO	LDB3 (Homo sapiens)	9068941	DNA:missense mutation:exon:p.A165V (human)	RGD	PMID:17337483 and REF_RGD_ID:11068981
LDB3	Dog	myotonic dystrophy type 1		ISO	LDB3 (Homo sapiens)	9068941	mRNA and protein:alternative form:exon	RGD	PMID:24878509 and REF_RGD_ID:12792205

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	arrhythmogenic right ventricular cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Arrhythmogenic right ventricular dysplasia	ClinVar	PMID:20474083 more ...
LDB3	Dog	cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11696561 more ...
LDB3	Dog	cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11696561 more ...
LDB3	Dog	cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11696561 more ...
LDB3	Dog	dilated cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy 1A		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14662268 more ...
LDB3	Dog	dilated cardiomyopathy 1B		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypokinetic dilated cardiomyopathy and familial	ClinVar	PMID:15668942 more ...
LDB3	Dog	dilated cardiomyopathy 1BB		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial isolated dilated cardiomyopathy	ClinVar	PMID:19377068 more ...
LDB3	Dog	dilated cardiomyopathy 1C		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11696561 more ...
LDB3	Dog	Dilated Cardiomyopathy with Left Ventricular Noncompaction		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Left ventricular noncompaction cardiomyopathy	ClinVar	PMID:17576681 more ...
LDB3	Dog	familial hypertrophic cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary familial hypertrophic cardiomyopathy	ClinVar	PMID:25741868 more ...
LDB3	Dog	hypertrophic cardiomyopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy	ClinVar	PMID:17235623 more ...
LDB3	Dog	hypertrophic cardiomyopathy 1		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
LDB3	Dog	hypertrophic cardiomyopathy 14		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy 14	ClinVar	PMID:25741868
LDB3	Dog	hypertrophic cardiomyopathy 2		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy 2	ClinVar	PMID:25741868
LDB3	Dog	hypertrophic cardiomyopathy 4		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypertrophic cardiomyopathy 4	ClinVar	PMID:25741868 and PMID:28492532
LDB3	Dog	Isolated Noncompaction of the Ventricular Myocardium		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Isolated Noncompaction of the Ventricular Myocardium	ClinVar	PMID:25741868 and PMID:28492532
LDB3	Dog	juvenile polyposis syndrome		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:11536076 more ...
LDB3	Dog	Left Ventricular Noncompaction 1		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Left ventricular noncompaction 1	ClinVar	PMID:25741868 and PMID:28492532
LDB3	Dog	long QT syndrome		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Long QT syndrome	ClinVar	PMID:25741868 and PMID:28492532
LDB3	Dog	myofibrillar myopathy		ISO	LDB3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15668942 more ...
LDB3	Dog	myofibrillar myopathy 4		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Myofibrillar myopathy 4	ClinVar	PMID:11696561 more ...
LDB3	Dog	Myofibrillar Myopathy, ZASP-Related		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Myofibrillar myopathy and ZASP-related	ClinVar	PMID:11696561 more ...
LDB3	Dog	neuromuscular disease		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neuromuscular disease	ClinVar	PMID:15668942 more ...
LDB3	Dog	PTEN hamartoma tumor syndrome		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: PTEN hamartoma tumor syndrome	ClinVar	PMID:16287957 more ...
LDB3	Dog	Ventricular Tachycardia		ISO	LDB3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ventricular tachycardia	ClinVar	PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	congenital myopathy		ISO	Ldb3 (Mus musculus)	9068941		MouseDO
LDB3	Dog	myofibrillar myopathy 1		ISO	Ldb3 (Mus musculus)	9068941	OMIM:601419	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	dilated cardiomyopathy 1C		ISO	LDB3 (Homo sapiens)	7240710		OMIM
LDB3	Dog	myofibrillar myopathy 4		ISO	LDB3 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	actin cytoskeleton organization	involved_in	IBA	FB:FBgn0035917 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	heart development	involved_in	IBA	MGI:1859274 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	muscle structure development	involved_in	IBA	FB:FBgn0035917 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	sarcomere organization	acts_upstream_of_or_within	IEA	UniProtKB:Q9JKS4 and ensembl:ENSMUSP00000022327	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	adherens junction	is_active_in	IBA	FB:FBgn0265991 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
LDB3	Dog	cytoskeleton	located_in	IEA	UniProtKB:O75112 and ensembl:ENSP00000355296	150520179		Ensembl	GO_REF:0000107
LDB3	Dog	filamentous actin	part_of	IBA	PANTHER:PTN001198141 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	stress fiber	is_active_in	IBA	FB:FBgn0265991 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	Z disc		ISO	Ldb3 (Rattus norvegicus)	9068941		RGD	PMID:19377068 and REF_RGD_ID:11069392
LDB3	Dog	Z disc	is_active_in	IBA	FB:FBgn0035917 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	Z disc	located_in	IEA	UniProtKB-SubCell:SL-0314	150520179		UniProt	GO_REF:0000044
LDB3	Dog	Z disc	located_in	IEA	UniProtKB:O75112 more ...	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	actin binding	enables	IBA	FB:FBgn0265991 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	cytoskeletal protein binding	enables	IEA	UniProtKB:O75112 and ensembl:ENSP00000355296	150520179		Ensembl	GO_REF:0000107
LDB3	Dog	enzyme binding		ISO	Pgm1 (Rattus norvegicus)	9068941		RGD	PMID:19377068 and REF_RGD_ID:11069392
LDB3	Dog	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
LDB3	Dog	muscle alpha-actinin binding	enables	IEA	UniProtKB:Q9JKS4 and ensembl:ENSMUSP00000022327	150520179		Ensembl	GO_REF:0000107
LDB3	Dog	muscle alpha-actinin binding	enables	IBA	FB:FBgn0035917 more ...	150520179		GO_Central	GO_REF:0000033
LDB3	Dog	protein binding	enables	ISO	UniProtKB:P35609 more ...	9068941	PMID:10427098	UniProt	PMID:10427098
LDB3	Dog	protein binding	enables	ISO	PR:Q8R4E4	9068941	PMID:11842093	MGI	PMID:11842093
LDB3	Dog	protein binding	enables	ISO	UniProtKB:Q9JI91	9068941	PMID:10391924	UniProt	PMID:10391924
LDB3	Dog	protein kinase C binding	enables	IEA	UniProtKB:Q9JKS4 and ensembl:ENSMUSP00000022327	150520179		Ensembl	GO_REF:0000107

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LDB3	Dog	protein kinase C (PKC) signaling pathway		ISO	LDB3 (Homo sapiens)	9068941		RGD	PMID:15380937 more ...

PMID:30032202

LDB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	34,367,155 - 34,421,992 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	34,358,600 - 34,415,382 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	34,727,065 - 34,783,874 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,781,382 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	34,573,067 - 34,629,852 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	34,742,332 - 34,799,090 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	35,247,342 - 35,304,143 (+)	NCBI		UU_Cfam_GSD_1.0

LDB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	86,666,788 - 86,736,072 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	86,666,785 - 86,736,072 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	88,426,545 - 88,495,829 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	88,418,301 - 88,485,805 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	88,418,407 - 88,484,731	NCBI
Celera	10	82,430,979 - 82,498,948 (+)	NCBI		Celera
Cytogenetic Map	10	q23.2	NCBI
HuRef	10	82,282,449 - 82,350,075 (+)	NCBI		HuRef
CHM1_1	10	88,709,859 - 88,777,554 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	87,550,947 - 87,620,190 (+)	NCBI		T2T-CHM13v2.0

Ldb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	34,248,656 - 34,312,276 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	34,248,560 - 34,310,639 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	34,526,699 - 34,590,314 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,526,603 - 34,588,682 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	35,339,885 - 35,401,867 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	33,355,797 - 33,417,766 (-)	NCBI		MGSCv36	mm8
Celera	14	30,792,367 - 30,854,357 (-)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	20.83	NCBI

Ldb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	9,862,161 - 9,926,338 (-)	NCBI		GRCr8
mRatBN7.2	16	9,855,768 - 9,920,108 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	9,855,927 - 9,918,532 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	9,875,530 - 9,938,140 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	11,020,238 - 11,082,844 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	9,870,588 - 9,933,188 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	10,878,348 - 10,943,016 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	10,878,334 - 10,941,501 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	9,203,392 - 9,267,999 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	10,221,362 - 10,247,798 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	5,298,641 - 5,360,715 (+)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

Ldb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955510	5,738,041 - 5,790,557 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955510	5,738,254 - 5,793,643 (+)	NCBI	ChiLan1.0	ChiLan1.0

LDB3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	98,662,475 - 98,732,654 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	98,667,794 - 98,737,973 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	83,095,625 - 83,164,297 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	86,641,517 - 86,722,159 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	86,654,737 - 86,722,148 (+)	Ensembl	panpan1.1		panPan2
PanPan1.1 Ensembl	10	86,641,746 - 86,653,143 (+)	Ensembl	panpan1.1		panPan2

Ldb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	44,085,476 - 44,150,650 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936804	196,598 - 259,168 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936804	196,592 - 259,168 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LDB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	87,644,242 - 87,722,251 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	87,660,961 - 87,722,249 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	94,915,388 - 94,976,712 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LDB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	45,130,015 - 45,199,585 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	45,128,134 - 45,198,106 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	5,238,400 - 5,307,738 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ldb3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624841	426,330 - 471,682 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624841	426,300 - 471,855 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

.

Variants in LDB3
979 total Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
4	34368105	34368106	G	T	snv	Chinese indigenous dogs (YJ4)	View more Information
4	34378643	34378644	G	A	snv	German Shepherd (DS051), German Shepherd (GS1), German Shepherd (GS10), German Shepherd (GS2), German Shepherd (GS5), German Shepherd (GS9), Kunming Dog (KM3), Kunming Dog (KM4), Kunming Dog (KM6), Kunming Dog (KM7), German Shepherd (GS4)	View more Information
4	34401714	34401715	T	C	snv	German Shepherd (GS1), Wolf (WO002_732), Chinese indigenous dogs (YJ3), Chinese indigenous dogs (YJ9), European Variation Archive Release 4, European Variation Archive Release 6, Australian Cattle dog (AC046), Alpine Dachsbracke (AD009), Alaskan Malamute (AM007), Australian Terrier (AR001), Border Collie (BC0480), Border Collie (BC485), Border Collie (BC555), Border Collie (BC597), Bearded Collie (BD016), Bearded Collie (BD052), Bearded Collie (BD085), Bearded Collie (BD089), Bearded Collie (BD093), Bearded Collie (BD098), Bavarian Hound (BG064), Basset (BH003), Basenji (BJ001), Basenji (BJ002), Basenji (BJ003), Basenji (BJ004), Basenji (BJ005), Basenji (BJ006), Bullmastiff (BU002), Chihuahua (CH019), Cavalier King Charles Spaniel (CK006), Cavalier King Charles Spaniel (CK023), Curly Coated Retriever (CR039), Chow Chow (CW011), Great Dane (DD116), Dachshund (DH0117), Chinese indigenous dogs (DQ3), Chinese indigenous dogs (DQ4), Chinese indigenous dogs (DQ5), Chinese indigenous dogs (DQ6), Chinese indigenous dogs (DQ8), Chinese indigenous dogs (DQ9), German Shepherd/Mixed breed (DS041), German Shepherd/Mixed breed (DS042), Eurasier (EU035), French Bulldog (FB046), French Bulldog (FB065), Golden Retriever (GR1078), German Spitz (GS104), German Shepherd (GS2), German Shepherd (GS3), Irish Terrier (IT0390), Siberian Husky (KKH2684), Kunming Dog (KM2), Kunming Dog (KM5), Kunming Dog (KM7), Kunming Dog (KM9), Labrador Retriever (LA2443), Labrador Retriever (LA882), Leonberger (LB111), Chinese indigenous dogs (LJ4), Chinese indigenous dogs (LJ6), Border Collie (LN47), Malinois (MA0163), Malinois (MA142), Malinois (MA324), Mixed Breed (MI016), Norwich Terrier (NW255), Old English Sheepdog (OS001), Poodle (PL116), Cavalier King Charles Spaniel (SID00101), Great Lakes Wolf (SRS661486), Iranian Wolf (SRS661488), Portuguese Wolf (SRS661492), Alaskan Husky (SY001), Alaskan Husky (SY018), Siberian Husky (SY046), Tibetan Mastiff (TM2), Tibetan Mastiff (TM3), Tibetan Mastiff (TM5), Tibetan Mastiff (TM6), Tibetan Mastiff (TM7), Wolf (WO001_895), Wolf (WO003_636), West Highland White Terrier (WW174), West Highland White Terrier (WW361), West Highland White Terrier (WW362), West Highland White Terrier (WW363), West Highland White Terrier (WW364), West Highland White Terrier (WW558), Chinese indigenous dogs (YJ1), Chinese indigenous dogs (YJ7)	View more Information
4	34408055	34408056	C	T	snv	Chinese indigenous dogs (YJ3), Tibetan Mastiff (TM9), Tibetan Mastiff (TM4)	View more Information
4	34408091	34408092	C	T	snv	German Shepherd/Mixed breed (DS041), Malinois (MA324), German Shepherd/Mixed breed (DS042)	View more Information
4	34410056	34410057	G	A	snv	Wolf (WO002_732)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005619108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005619109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005619110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005619111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005619112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005619113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014112944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038493035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038598852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_859776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_859925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005324291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005334745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005358085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005392588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005425697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000025464 ⟹ ENSCAFP00000023642

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000025496 ⟹ ENSCAFP00000023672

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,367,918 - 34,421,509 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000043135 ⟹ ENSCAFP00000039017

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000071948 ⟹ ENSCAFP00000063422

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000079314 ⟹ ENSCAFP00000052422

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,364,025 - 34,421,509 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000086156 ⟹ ENSCAFP00000060762

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	34,367,918 - 34,393,647 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845011977 ⟹ ENSCAFP00845009347

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,781,382 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012014 ⟹ ENSCAFP00845009373

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,781,382 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012063 ⟹ ENSCAFP00845009417

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,781,382 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012098 ⟹ ENSCAFP00845009447

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,060 - 34,754,102 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012136 ⟹ ENSCAFP00845009481

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,066 - 34,754,093 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012168 ⟹ ENSCAFP00845009509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	34,727,857 - 34,754,099 (+)	Ensembl

RefSeq Acc Id:

XM_005619111 ⟹ XP_005619168

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,847 - 34,421,992 (+)	NCBI
Dog10K_Boxer_Tasha	4	34,359,294 - 34,413,399 (+)	NCBI

Sequence:

show sequence

GCGGCGGGCGGCGGAGTATAGGGTTACAGCCCATTTATGGGCGCAGCGGAGGGCAGATATCAGTGTCCAGGGCATTCGTTCCCAGCTATTCTTAGGAGCGTCTAGGGAGCTCCACGCAGCCGCCAGAC
CGAGGGACGGAGCAGAGGCCGCCGCGGTCAGCACGAGCATGTCGTACAGCGTGACCCTGACCGGGCCCGGGCCCTGGGGCTTCCGTCTCCAGGGGGGCAAGGACTTCAACATGCCGCTCACTATCTCC
CGGATCACACCAGGAAGCAAGGCCGCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTAGCCATCGATGGAGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAG
CTACAACCTGAGTCTCACGCTGCAGAAGTCGAAGCGCCCCATCCCCATCTCCACGACAGCGCCCCCGGTCCAGTCCCCTCTGCCGGTGATCCCCCACCAGAAGGACCCTGCTGGGGACATGAGCGGCA
GCCCCACGGCACGCAGCCCCGGACCCCTGGGCCCCCCGGAGCTCGGGCCCAGCTCTAGCCCCTCCTTCTCCCAGAGTCCCCCAAGGGGCGGCCCGGGCACGGAGGGAGCCCCGGGACCGAGAGGGCAG
GGCAGGCCCGCGCAGTACAACAACCCCATTGGGCTGTACTCGGCCGAGACCCTGAGGGAGATGGCTCAGGTGTATCGGATGAGCCTCGGAGGGAAGGCCTGGGGGGCCGGACTCCCAGGAGGGAGCCT
CCCTATTAAGGACCTGGCCGTGGACAGCGCATCTCCCGTGTACCAGGCCGTGATCAAGAACCAGAACAAGCCAGAAGACGAGGCTGACGAGTGGGCCCGCCGCTCCTCCAACCTGCAGTCTCGCTCCT
TCCGCATCCTGGCCCAGATGACCGGGACAGAGTACATGCAAGACCCTGATGAGGAAGCTCTGCGGAGGTCAAGGCCCCAGGCCTCTGCCTACAGCCTGGCCAAGGCGACCTCTCCGGCACCCGCCTCT
CATCCATACAGTGAGGCCTCAGCTGCCCCTGCGCCCAAGCCCCGGGTTGTCACCACCGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCCGCGGCGACCTACAGCCCCTCCCCGGGGCCCAGCTA
CAGCCCAGCTCCCTACACCCCCTCGCCGGCCCCGGGCCCGGGCTACAGCCCCACGCCGTCCGCGGCCTACGGTGGCGGCCCCGTGGAGTCGGCCAGCCGTCCCCCGTGGGTGGCAGACGACAGCTTCT
CTCAGAAGTTTGCCCCCGGCAAGAGCAGCAGCTCGGCCAGCAGACAGACCCTGCCGCGAGGGGCCCCCACCTACGGCCCCCCCGGGCCCCAAGTGTCCCCCCTGGCCAGGGGCATCGTGCAGCGGGCG
GAGCGCTTCCCGGCCAGCAGCAGGACCCCGCTCTGCGGCCACTGCAACAACGTCATCAGGGGCCCCTTTCTGGTAGCCATGGGCCGTTCCTGGCACCCGGAGGAGTTCAATTGCGCCTACTGCAAGAC
CTCCCTGGCGGACGTGTGCTTCGTGGAGGAGCAGAGCAACGTTTACTGCGAGCGCTGTTATGAGCAGTTCTTTGCTCCGATCTGCGCCAAGTGCAACACCAAAATCATGGGGGAAGTGATGCACGCCC
TGCGGCAGACTTGGCACACCACCTGCTTCGTCTGCGCAGCTTGCAAAAAGCCCTTCGGGAACAGCCTCTTCCACATGGAAGACGGGGAGCCCTACTGTGAGAAAGACTACGTCAACCTGTTCAGCACC
AAGTGTCATGGCTGTGATTTCCCTGTGGAGGCCGGCGACAAGTTTATCGAAGCCCTGGGGCATACCTGGCACGACACCTGCTTCATCTGCGCAGTGTGCCACGTGAATCTGGAGGGACAGCCGTTCTA
CTCCAAGAAGGACAAGCCCCTGTGCAAGAAGCACGCGCACGCCATCAACGTGTAGGGAGCCCGGAGCCCCTGACGCTGACAGGCCGGCCGCCTGCTGCCGGCGACAGAGGAGCGAGGAGGCTGGTGTT
TCTGGGGGGAAAGGGGGAGACAGGAAGCTACTGAGCCCTTTGAAGTAAGATTTTAGTCCTTTTTCTGCACACAGAGTGCGTACTTGCATAGCTGAGTCTAGAAGCCAAACGAAGATGCCTGACCCAGC
TCCAGGGAGTCCGCGGCTGCAGCTGTAGGTCCCCGCTGGGCTGGGGCAGGCTTCGAGGACTGCAGGGACACTGGTCACCTTGCGGGGCGCCGCGCTCCCGGGTGGGGGAGCCGACCCGCGGCCACTGC
AGGCCGCCACCGCAGGGCCATCCCCGCAGGCCACCCCACAGGCCACCCCCCCCCCCGGGGCCACCCCCGCAGGCCTCCCCCGCAGGCCACCCGCCCATTGGCTATATTTAGAGCCAAGGCCGAGGGTG
GCTCTCGGCGCCTAAAAAGGAAGCATGTTCCGTTCCTTGTCCCTTGTCCCTCGGCAGGCAGGGCTGGGGCCCAGCAGGTGTCCCCGGGGACAGGGAGGGGGGCCGGGGAGGGGGCTGGAGGGCTGCGG
CCCACACCCCACACCGCCTGGGCCCTGCGCCACCGCACTTCCGTCTCCCACATCCCGTGTTCCCGAAGGCTTAGCTCCTTCCTGACTTGCGCGGGGAGGTGGAGCTGCGCTTCTCCAGTTTTGCTTTG
CTGCGTGAGAGGAGATCTCAAGGCGACTCCGGTGTCTTGCCTCCCGTGGGGCCGCGCTCCTACTGCACCCCCAGCCCTGGGCTGC

hide sequence

RefSeq Acc Id:

XM_005619112 ⟹ XP_005619169

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,848 - 34,421,992 (+)	NCBI
Dog10K_Boxer_Tasha	4	34,359,294 - 34,413,399 (+)	NCBI

Sequence:

show sequence

CGGCGGGCGGCGGAGTATAGGGTTACAGCCCATTTATGGGCGCAGCGGAGGGCAGATATCAGTGTCCAGGGCATTCGTTCCCAGCTATTCTTAGGAGCGTCTAGGGAGCTCCACGCAGCCGCCAGACC
GAGGGACGGAGCAGAGGCCGCCGCGGTCAGCACGAGCATGTCGTACAGCGTGACCCTGACCGGGCCCGGGCCCTGGGGCTTCCGTCTCCAGGGGGGCAAGGACTTCAACATGCCGCTCACTATCTCCC
GGATCACACCAGGAAGCAAGGCCGCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTAGCCATCGATGGAGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGC
TACAACCTGAGTCTCACGCTGCAGAAGTCGAAGCGCCCCATCCCCATCTCCACGACAGCGCCCCCGGTCCAGTCCCCTCTGCCGGTGATCCCCCACCAGAAGGTGGTAGCCAACTCTCCAGCCAACGC
CGACTACCAGGAGCGGTTCAACCCCAGCGCCCTGAAGGACTCGGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGGCTGGGCGGCAAGGCCACCATCATCCACGCGCAGTACAACACGCCCATCA
GCATGTACTCCCAGGACGCCATCATGGACGCCATTGCTGGGCAGGCCCAGGCCCAGGGCAGTGACTTCAGTGGGGCATCGCCGCTGGCGAGCCTCCCTATTAAGGACCTGGCCGTGGACAGCGCATCT
CCCGTGTACCAGGCCGTGATCAAGAACCAGAACAAGCCAGAAGACGAGGCTGACGAGTGGGCCCGCCGCTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGGACAGAGTA
CATGCAAGACCCTGATGAGGAAGCTCTGCGGAGGTCAAGGCCCCAGGCCTCTGCCTACAGCCTGGCCAAGGCGACCTCTCCGGCACCCGCCTCTCATCCATACAGTGAGGCCTCAGCTGCCCCTGCGC
CCAAGCCCCGGGTTGTCACCACCGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCCGCGGCGACCTACAGCCCCTCCCCGGGGCCCAGCTACAGCCCAGCTCCCTACACCCCCTCGCCGGCCCCG
GGCCCGGGCTACAGCCCCACGCCGTCCGCGGCCTACGGTGGCGGCCCCGTGGAGTCGGCCAGCCGTCCCCCGTGGGTGGCAGACGACAGCTTCTCTCAGAAGTTTGCCCCCGGCAAGAGCAGCAGCTC
GGCCAGCAGACAGACCCTGCCGCGAGGGGCCCCCACCTACGGCCCCCCCGGGCCCCAAGTGTCCCCCCTGGCCAGGGGCATCGTGCAGCGGGCGGAGCGCTTCCCGGCCAGCAGCAGGACCCCGCTCT
GCGGCCACTGCAACAACGTCATCAGGGGCCCCTTTCTGGTAGCCATGGGCCGTTCCTGGCACCCGGAGGAGTTCAATTGCGCCTACTGCAAGACCTCCCTGGCGGACGTGTGCTTCGTGGAGGAGCAG
AGCAACGTTTACTGCGAGCGCTGTTATGAGCAGTTCTTTGCTCCGATCTGCGCCAAGTGCAACACCAAAATCATGGGGGAAGTGATGCACGCCCTGCGGCAGACTTGGCACACCACCTGCTTCGTCTG
CGCAGCTTGCAAAAAGCCCTTCGGGAACAGCCTCTTCCACATGGAAGACGGGGAGCCCTACTGTGAGAAAGACTACGTCAACCTGTTCAGCACCAAGTGTCATGGCTGTGATTTCCCTGTGGAGGCCG
GCGACAAGTTTATCGAAGCCCTGGGGCATACCTGGCACGACACCTGCTTCATCTGCGCAGTGTGCCACGTGAATCTGGAGGGACAGCCGTTCTACTCCAAGAAGGACAAGCCCCTGTGCAAGAAGCAC
GCGCACGCCATCAACGTGTAGGGAGCCCGGAGCCCCTGACGCTGACAGGCCGGCCGCCTGCTGCCGGCGACAGAGGAGCGAGGAGGCTGGTGTTTCTGGGGGGAAAGGGGGAGACAGGAAGCTACTGA
GCCCTTTGAAGTAAGATTTTAGTCCTTTTTCTGCACACAGAGTGCGTACTTGCATAGCTGAGTCTAGAAGCCAAACGAAGATGCCTGACCCAGCTCCAGGGAGTCCGCGGCTGCAGCTGTAGGTCCCC
GCTGGGCTGGGGCAGGCTTCGAGGACTGCAGGGACACTGGTCACCTTGCGGGGCGCCGCGCTCCCGGGTGGGGGAGCCGACCCGCGGCCACTGCAGGCCGCCACCGCAGGGCCATCCCCGCAGGCCAC
CCCACAGGCCACCCCCCCCCCCGGGGCCACCCCCGCAGGCCTCCCCCGCAGGCCACCCGCCCATTGGCTATATTTAGAGCCAAGGCCGAGGGTGGCTCTCGGCGCCTAAAAAGGAAGCATGTTCCGTT
CCTTGTCCCTTGTCCCTCGGCAGGCAGGGCTGGGGCCCAGCAGGTGTCCCCGGGGACAGGGAGGGGGGCCGGGGAGGGGGCTGGAGGGCTGCGGCCCACACCCCACACCGCCTGGGCCCTGCGCCACC
GCACTTCCGTCTCCCACATCCCGTGTTCCCGAAGGCTTAGCTCCTTCCTGACTTGCGCGGGGAGGTGGAGCTGCGCTTCTCCAGTTTTGCTTTGCTGCGTGAGAGGAGATCTCAAGGCGACTCCGGTG
TCTTGCCTCCCGTGGGGCCGCGCTCCTACTGCACCCCCAGCCCTGGGCTGC

hide sequence

RefSeq Acc Id:

XM_005619113 ⟹ XP_005619170

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,849 - 34,421,992 (+)	NCBI
Dog10K_Boxer_Tasha	4	34,359,294 - 34,413,399 (+)	NCBI

Sequence:

show sequence

GGCGGGCGGCGGAGTATAGGGTTACAGCCCATTTATGGGCGCAGCGGAGGGCAGATATCAGTGT
CCAGGGCATTCGTTCCCAGCTATTCTTAGGAGCGTCTAGGGAGCTCCACGCAGCCGCCAGACCGAGGGACGGAGCAGAGGCCGCCGCGGTCAGCACGAGCATGTCGTACAGCGTGACCCTGACCGGGC
CCGGGCCCTGGGGCTTCCGTCTCCAGGGGGGCAAGGACTTCAACATGCCGCTCACTATCTCCCGGATCACACCAGGAAGCAAGGCCGCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTAGCCATC
GATGGAGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGCTACAACCTGAGTCTCACGCTGCAGAAGTCGAAGCGCCCCATCCCCATCTCCACGACAGCGCCCCC
GGTCCAGTCCCCTCTGCCGGTGATCCCCCACCAGAAGGTGGTAGCCAACTCTCCAGCCAACGCCGACTACCAGGAGCGGTTCAACCCCAGCGCCCTGAAGGACTCGGCCCTGTCCACCCACAAGCCCA
TCGAGGTGAAGGGGCTGGGCGGCAAGGCCACCATCATCCACGCGCAGTACAACACGCCCATCAGCATGTACTCCCAGGACGCCATCATGGACGCCATTGCTGGGCAGGCCCAGGCCCAGGGCAGTGAC
TTCAGTGGGAGCCTCCCTATTAAGGACCTGGCCGTGGACAGCGCATCTCCCGTGTACCAGGCCGTGATCAAGAACCAGAACAAGCCAGAAGACGAGGCTGACGAGTGGGCCCGCCGCTCCTCCAACCT
GCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGGACAGAGTACATGCAAGACCCTGATGAGGAAGCTCTGCGGAGGTCAAGGCCCCAGGCCTCTGCCTACAGCCTGGCCAAGGCGACCTCTC
CGGCACCCGCCTCTCATCCATACAGTGAGGCCTCAGCTGCCCCTGCGCCCAAGCCCCGGGTTGTCACCACCGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCCGCGGCGACCTACAGCCCCTCC
CCGGGGCCCAGCTACAGCCCAGCTCCCTACACCCCCTCGCCGGCCCCGGGCCCGGGCTACAGCCCCACGCCGTCCGCGGCCTACGGTGGCGGCCCCGTGGAGTCGGCCAGCCGTCCCCCGTGGGTGGC
AGACGACAGCTTCTCTCAGAAGTTTGCCCCCGGCAAGAGCAGCAGCTCGGCCAGCAGACAGACCCTGCCGCGAGGGGCCCCCACCTACGGCCCCCCCGGGCCCCAAGTGTCCCCCCTGGCCAGGGGCA
TCGTGCAGCGGGCGGAGCGCTTCCCGGCCAGCAGCAGGACCCCGCTCTGCGGCCACTGCAACAACGTCATCAGGGGCCCCTTTCTGGTAGCCATGGGCCGTTCCTGGCACCCGGAGGAGTTCAATTGC
GCCTACTGCAAGACCTCCCTGGCGGACGTGTGCTTCGTGGAGGAGCAGAGCAACGTTTACTGCGAGCGCTGTTATGAGCAGTTCTTTGCTCCGATCTGCGCCAAGTGCAACACCAAAATCATGGGGGA
AGTGATGCACGCCCTGCGGCAGACTTGGCACACCACCTGCTTCGTCTGCGCAGCTTGCAAAAAGCCCTTCGGGAACAGCCTCTTCCACATGGAAGACGGGGAGCCCTACTGTGAGAAAGACTACGTCA
ACCTGTTCAGCACCAAGTGTCATGGCTGTGATTTCCCTGTGGAGGCCGGCGACAAGTTTATCGAAGCCCTGGGGCATACCTGGCACGACACCTGCTTCATCTGCGCAGTGTGCCACGTGAATCTGGAG
GGACAGCCGTTCTACTCCAAGAAGGACAAGCCCCTGTGCAAGAAGCACGCGCACGCCATCAACGTGTAGGGAGCCCGGAGCCCCTGACGCTGACAGGCCGGCCGCCTGCTGCCGGCGACAGAGGAGCG
AGGAGGCTGGTGTTTCTGGGGGGAAAGGGGGAGACAGGAAGCTACTGAGCCCTTTGAAGTAAGATTTTAGTCCTTTTTCTGCACACAGAGTGCGTACTTGCATAGCTGAGTCTAGAAGCCAAACGAAG
ATGCCTGACCCAGCTCCAGGGAGTCCGCGGCTGCAGCTGTAGGTCCCCGCTGGGCTGGGGCAGGCTTCGAGGACTGCAGGGACACTGGTCACCTTGCGGGGCGCCGCGCTCCCGGGTGGGGGAGCCGA
CCCGCGGCCACTGCAGGCCGCCACCGCAGGGCCATCCCCGCAGGCCACCCCACAGGCCACCCCCCCCCCCGGGGCCACCCCCGCAGGCCTCCCCCGCAGGCCACCCGCCCATTGGCTATATTTAGAGC
CAAGGCCGAGGGTGGCTCTCGGCGCCTAAAAAGGAAGCATGTTCCGTTCCTTGTCCCTTGTCCCTCGGCAGGCAGGGCTGGGGCCCAGCAGGTGTCCCCGGGGACAGGGAGGGGGGCCGGGGAGGGGG
CTGGAGGGCTGCGGCCCACACCCCACACCGCCTGGGCCCTGCGCCACCGCACTTCCGTCTCCCACATCCCGTGTTCCCGAAGGCTTAGCTCCTTCCTGACTTGCGCGGGGAGGTGGAGCTGCGCTTCT
CCAGTTTTGCTTTGCTGCGTGAGAGGAGATCTCAAGGCGACTCCGGTGTCTTGCCTCCCGTGGGGCCGCGCTCCTACTGCACCCCCAGCCCTGGGCTGC

hide sequence

RefSeq Acc Id:

XM_038473453 ⟹ XP_038329381

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,627,871 (+)	NCBI

RefSeq Acc Id:

XM_038473454 ⟹ XP_038329382

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,067 - 34,627,871 (+)	NCBI

RefSeq Acc Id:

XM_038473455 ⟹ XP_038329383

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,067 - 34,627,871 (+)	NCBI

RefSeq Acc Id:

XM_038473456 ⟹ XP_038329384

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,627,871 (+)	NCBI

RefSeq Acc Id:

XM_038473457 ⟹ XP_038329385

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,627,871 (+)	NCBI

RefSeq Acc Id:

XM_038473458 ⟹ XP_038329386

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,600,108 (+)	NCBI

RefSeq Acc Id:

XM_038473460 ⟹ XP_038329388

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,600,108 (+)	NCBI

RefSeq Acc Id:

XM_038493024 ⟹ XP_038348952

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	4	34,358,600 - 34,413,399 (+)	NCBI

RefSeq Acc Id:

XM_038493035 ⟹ XP_038348963

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	4	34,358,600 - 34,413,399 (+)	NCBI

RefSeq Acc Id:

XM_038534521 ⟹ XP_038390449

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,302,160 (+)	NCBI

RefSeq Acc Id:

XM_038534522 ⟹ XP_038390450

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,247,342 - 35,302,160 (+)	NCBI

RefSeq Acc Id:

XM_038534523 ⟹ XP_038390451

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,247,342 - 35,302,160 (+)	NCBI

RefSeq Acc Id:

XM_038534525 ⟹ XP_038390453

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,302,160 (+)	NCBI

RefSeq Acc Id:

XM_038534526 ⟹ XP_038390454

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,302,160 (+)	NCBI

RefSeq Acc Id:

XM_038534527 ⟹ XP_038390455

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,274,385 (+)	NCBI

RefSeq Acc Id:

XM_038534528 ⟹ XP_038390456

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,274,385 (+)	NCBI

RefSeq Acc Id:

XM_038598847 ⟹ XP_038454775

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,742,332 - 34,797,115 (+)	NCBI

RefSeq Acc Id:

XM_038598848 ⟹ XP_038454776

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,742,332 - 34,797,115 (+)	NCBI

RefSeq Acc Id:

XM_038598849 ⟹ XP_038454777

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,743,026 - 34,797,115 (+)	NCBI

RefSeq Acc Id:

XM_038598850 ⟹ XP_038454778

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,743,026 - 34,797,115 (+)	NCBI

RefSeq Acc Id:

XM_038598851 ⟹ XP_038454779

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,743,026 - 34,769,370 (+)	NCBI

RefSeq Acc Id:

XM_038598852 ⟹ XP_038454780

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,743,026 - 34,769,370 (+)	NCBI

RefSeq Acc Id:

XM_038663124 ⟹ XP_038519052

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,781,889 (+)	NCBI

RefSeq Acc Id:

XM_038663125 ⟹ XP_038519053

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,065 - 34,781,889 (+)	NCBI

RefSeq Acc Id:

XM_038663126 ⟹ XP_038519054

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,065 - 34,781,889 (+)	NCBI

RefSeq Acc Id:

XM_038663127 ⟹ XP_038519055

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,781,889 (+)	NCBI

RefSeq Acc Id:

XM_038663128 ⟹ XP_038519056

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,781,889 (+)	NCBI

RefSeq Acc Id:

XM_038663129 ⟹ XP_038519057

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,754,102 (+)	NCBI

RefSeq Acc Id:

XM_038663130 ⟹ XP_038519058

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,754,102 (+)	NCBI

RefSeq Acc Id:

XM_859776 ⟹ XP_864869

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,859 - 34,394,183 (+)	NCBI
Dog10K_Boxer_Tasha	4	34,359,294 - 34,385,639 (+)	NCBI

Sequence:

show sequence

GGAGTATAGGGTTACAGCCCATTTATGGGCGCAGCGGAGGGCAGATATCAGTGTCCAGGGCATTCGTTCCCAGCTATTCTTAGGAGCGTCTAGGGAGCTCCACGCAGCCGCCAGACCGAGGGACGGAG
CAGAGGCCGCCGCGGTCAGCACGAGCATGTCGTACAGCGTGACCCTGACCGGGCCCGGGCCCTGGGGCTTCCGTCTCCAGGGGGGCAAGGACTTCAACATGCCGCTCACTATCTCCCGGATCACACCA
GGAAGCAAGGCCGCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTAGCCATCGATGGAGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGCTACAACCTGAG
TCTCACGCTGCAGAAGTCGAAGCGCCCCATCCCCATCTCCACGACAGCGCCCCCGGTCCAGTCCCCTCTGCCGGTGATCCCCCACCAGAAGGTGGTAGCCAACTCTCCAGCCAACGCCGACTACCAGG
AGCGGTTCAACCCCAGCGCCCTGAAGGACTCGGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGGCTGGGCGGCAAGGCCACCATCATCCACGCGCAGTACAACACGCCCATCAGCATGTACTCC
CAGGACGCCATCATGGACGCCATTGCTGGGCAGGCCCAGGCCCAGGGCAGTGACTTCAGTGGGAGCCTCCCTATTAAGGACCTGGCCGTGGACAGCGCATCTCCCGTGTACCAGGCCGTGATCAAGAA
CCAGAACAAGCCAGAAGACGAGGCTGACGAGTGGGCCCGCCGCTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGGACAGAGTACATGCAAGACCCTGATGAGGAAGCTC
TGCGGAGGTCAAGGGAAAGGTTTGAAACGGAACGTAACAGCCCACGTTTTGCCAAATTGCGCAACTGGCACCATGGCCTTTCGGCCCAAATCCTTAATGTTAAAAGCTAAAAGGCTGTCTGGAACCCC
CCACTCCTCTCAGGCTGGACTCCCACCCTCCACACCCCACACAGCTCTGGCATGTGAGCCCCACGGTGATGCTTGAGAATGTGCGGCTGTGCTGGGGGCGCCTCTGATAGCCGCCTGCCTGCCCCAGA
GCCGACAGCAAAGGTCCGGCCCCCGCCCCGCCCGCCCCGCCCCGCCCGGCTACACCCCTCGGCACCCCTCACAGGGCCCGAGCCTCTGCCCCCCGCCCAGGCCCTTCGCCGTAGATCAGAGGTCGGGG
CAGGGCTTGCTGCCAAGTAGCCCAGACCCAGGGGAAGCGGGACGTGCCCCTGGCCCAGTGCCAGCGTCCTCGCCCCGGAGAGAGGCGCTCTGGCCCGGGCCGTCCCGGAATAAGCCCACGGAGCGGCC
CGGGCGGCCGGAGCAGGCTCTGCCGAGGGCATGCGTCCCCGGGGCAGGCGGCCGAGGCTCCGCAGGCCGCAGTGACGCTGGCCGTGCTCCCCCGCGCTGTGTGCTGTGTCCCTAGTGCTCCCCCCTGT
ACATAGATAAAGGCCTGTTCTGAAATAAAGAGGATTTAAAGTGAATCGAA

hide sequence

RefSeq Acc Id:

XM_859925 ⟹ XP_865018

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,856 - 34,394,183 (+)	NCBI
Dog10K_Boxer_Tasha	4	34,359,294 - 34,385,639 (+)	NCBI

Sequence:

show sequence

GGCGGAGTATAGGGTTACAGCCCATTTATGGGCGCAGCGGAGGGCAGATATCAGTGTCCAGGGC
ATTCGTTCCCAGCTATTCTTAGGAGCGTCTAGGGAGCTCCACGCAGCCGCCAGACCGAGGGACGGAGCAGAGGCCGCCGCGGTCAGCACGAGCATGTCGTACAGCGTGACCCTGACCGGGCCCGGGCC
CTGGGGCTTCCGTCTCCAGGGGGGCAAGGACTTCAACATGCCGCTCACTATCTCCCGGATCACACCAGGAAGCAAGGCCGCCCAGTCCCAGCTCAGCCAGGGTGACCTCGTGGTAGCCATCGATGGAG
TCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAGTCTGCCAGCTACAACCTGAGTCTCACGCTGCAGAAGTCGAAGCGCCCCATCCCCATCTCCACGACAGCGCCCCCGGTCCAG
TCCCCTCTGCCGGTGATCCCCCACCAGAAGGACCCTGCTGGGGACATGAGCGGCAGCCCCACGGCACGCAGCCCCGGACCCCTGGGCCCCCCGGAGCTCGGGCCCAGCTCTAGCCCCTCCTTCTCCCA
GAGTCCCCCAAGGGGCGGCCCGGGCACGGAGGGAGCCCCGGGACCGAGAGGGCAGGGCAGGCCCGCGCAGTACAACAACCCCATTGGGCTGTACTCGGCCGAGACCCTGAGGGAGATGGCTCAGGTGT
ATCGGATGAGCCTCGGAGGGAAGGCCTGGGGGGCCGGACTCCCAGGAGGGAGCCTCCCTATTAAGGACCTGGCCGTGGACAGCGCATCTCCCGTGTACCAGGCCGTGATCAAGAACCAGAACAAGCCA
GAAGACGAGGCTGACGAGTGGGCCCGCCGCTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACCGGGACAGAGTACATGCAAGACCCTGATGAGGAAGCTCTGCGGAGGTCAAG
GGAAAGGTTTGAAACGGAACGTAACAGCCCACGTTTTGCCAAATTGCGCAACTGGCACCATGGCCTTTCGGCCCAAATCCTTAATGTTAAAAGCTAAAAGGCTGTCTGGAACCCCCCACTCCTCTCAG
GCTGGACTCCCACCCTCCACACCCCACACAGCTCTGGCATGTGAGCCCCACGGTGATGCTTGAGAATGTGCGGCTGTGCTGGGGGCGCCTCTGATAGCCGCCTGCCTGCCCCAGAGCCGACAGCAAAG
GTCCGGCCCCCGCCCCGCCCGCCCCGCCCCGCCCGGCTACACCCCTCGGCACCCCTCACAGGGCCCGAGCCTCTGCCCCCCGCCCAGGCCCTTCGCCGTAGATCAGAGGTCGGGGCAGGGCTTGCTGC
CAAGTAGCCCAGACCCAGGGGAAGCGGGACGTGCCCCTGGCCCAGTGCCAGCGTCCTCGCCCCGGAGAGAGGCGCTCTGGCCCGGGCCGTCCCGGAATAAGCCCACGGAGCGGCCCGGGCGGCCGGAG
CAGGCTCTGCCGAGGGCATGCGTCCCCGGGGCAGGCGGCCGAGGCTCCGCAGGCCGCAGTGACGCTGGCCGTGCTCCCCCGCGCTGTGTGCTGTGTCCCTAGTGCTCCCCCCTGTACATAGATAAAGG
CCTGTTCTGAAATAAAGAGGATTTAAAGTGAATCGAA

hide sequence

RefSeq Acc Id:

XR_005324291

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	34,573,761 - 34,629,852 (+)	NCBI

RefSeq Acc Id:

XR_005334745

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	4	34,359,294 - 34,415,382 (+)	NCBI

RefSeq Acc Id:

XR_005358085

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	35,248,036 - 35,304,143 (+)	NCBI

RefSeq Acc Id:

XR_005392588

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	34,743,026 - 34,799,090 (+)	NCBI

RefSeq Acc Id:

XR_005425697

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	34,727,759 - 34,783,874 (+)	NCBI


Protein RefSeqs	XP_005619168	(Get FASTA)	NCBI Sequence Viewer
	XP_005619169	(Get FASTA)	NCBI Sequence Viewer
	XP_005619170	(Get FASTA)	NCBI Sequence Viewer
	XP_038329381	(Get FASTA)	NCBI Sequence Viewer
	XP_038329382	(Get FASTA)	NCBI Sequence Viewer
	XP_038329383	(Get FASTA)	NCBI Sequence Viewer
	XP_038329384	(Get FASTA)	NCBI Sequence Viewer
	XP_038329385	(Get FASTA)	NCBI Sequence Viewer
	XP_038329386	(Get FASTA)	NCBI Sequence Viewer
	XP_038329388	(Get FASTA)	NCBI Sequence Viewer
	XP_038348952	(Get FASTA)	NCBI Sequence Viewer
	XP_038348963	(Get FASTA)	NCBI Sequence Viewer
	XP_038390449	(Get FASTA)	NCBI Sequence Viewer
	XP_038390450	(Get FASTA)	NCBI Sequence Viewer
	XP_038390451	(Get FASTA)	NCBI Sequence Viewer
	XP_038390453	(Get FASTA)	NCBI Sequence Viewer
	XP_038390454	(Get FASTA)	NCBI Sequence Viewer
	XP_038390455	(Get FASTA)	NCBI Sequence Viewer
	XP_038390456	(Get FASTA)	NCBI Sequence Viewer
	XP_038454775	(Get FASTA)	NCBI Sequence Viewer
	XP_038454776	(Get FASTA)	NCBI Sequence Viewer
	XP_038454777	(Get FASTA)	NCBI Sequence Viewer
	XP_038454778	(Get FASTA)	NCBI Sequence Viewer
	XP_038454779	(Get FASTA)	NCBI Sequence Viewer
	XP_038454780	(Get FASTA)	NCBI Sequence Viewer
	XP_038519052	(Get FASTA)	NCBI Sequence Viewer
	XP_038519053	(Get FASTA)	NCBI Sequence Viewer
	XP_038519054	(Get FASTA)	NCBI Sequence Viewer
	XP_038519055	(Get FASTA)	NCBI Sequence Viewer
	XP_038519056	(Get FASTA)	NCBI Sequence Viewer
	XP_038519057	(Get FASTA)	NCBI Sequence Viewer
	XP_038519058	(Get FASTA)	NCBI Sequence Viewer
	XP_864869	(Get FASTA)	NCBI Sequence Viewer
	XP_865018	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000023642.5
	ENSCAFP00000023672.5
	ENSCAFP00000039017.3
	ENSCAFP00000060762.2
	ENSCAFP00000063422.2
	ENSCAFP00030001220.1
	ENSCAFP00030001238.1
	ENSCAFP00040016863.1
	ENSCAFP00040016888.1
	ENSCAFP00040016920.1
	ENSCAFP00040017031.1
	ENSCAFP00845009347.1
	ENSCAFP00845009373
	ENSCAFP00845009373.1
	ENSCAFP00845009417
	ENSCAFP00845009417.1
	ENSCAFP00845009447
	ENSCAFP00845009447.1
	ENSCAFP00845009481.1
	ENSCAFP00845009509
	ENSCAFP00845009509.1

RefSeq Acc Id:	XP_005619169 ⟸ XM_005619112
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0S782 (UniProtKB/TrEMBL), A0A8P0NQK1 (UniProtKB/TrEMBL), A0A8C0S7E5 (UniProtKB/TrEMBL), A0A8I3RTI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNPSALK DSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGASPLASLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRS RPQASAYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAATYSPSPGPSYSPAPYTPSPAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSASRQTLPRGAPT YGPPGPQVSPLARGIVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLF HMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV hide sequence

RefSeq Acc Id:	XP_005619168 ⟸ XM_005619111
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KIS5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKDPAGDMSGSPTARSPGPLGPP ELGPSSSPSFSQSPPRGGPGTEGAPGPRGQGRPAQYNNPIGLYSAETLREMAQVYRMSLGGKAWGAGLPGGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYM QDPDEEALRRSRPQASAYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAATYSPSPGPSYSPAPYTPSPAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSA SRQTLPRGAPTYGPPGPQVSPLARGIVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFVCA ACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV hide sequence

RefSeq Acc Id:	XP_005619170 ⟸ XM_005619113
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3NFE0 (UniProtKB/TrEMBL), A0A8C0S7E5 (UniProtKB/TrEMBL), A0A8I3RTI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNPSALK DSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSRPQAS AYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAATYSPSPGPSYSPAPYTPSPAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSASRQTLPRGAPTYGPPG PQVSPLARGIVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDG EPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV hide sequence

RefSeq Acc Id:	XP_865018 ⟸ XM_859925
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0R9S0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKDPAGDMSGSPTARSPGPLGPP ELGPSSSPSFSQSPPRGGPGTEGAPGPRGQGRPAQYNNPIGLYSAETLREMAQVYRMSLGGKAWGAGLPGGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYM QDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS hide sequence

RefSeq Acc Id:	XP_864869 ⟸ XM_859776
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3N0Y5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLE AQNKIKSASYNLSLTLQKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAV DSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILNVKS hide sequence

Protein Domains

LIM zinc-binding PDZ

RGD ID:

Promoter ID:

Type:

initiation region

Name:

LDB3_1

Description:

LIM domain binding 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	34,367,934 - 34,367,994	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016038	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030000770	UniProtKB/TrEMBL
	ENSCAFG00040010429	UniProtKB/TrEMBL
	ENSCAFG00845006724	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000025464.5	UniProtKB/TrEMBL
	ENSCAFT00000025496.6	UniProtKB/TrEMBL
	ENSCAFT00000043135.4	UniProtKB/TrEMBL
	ENSCAFT00000071948.2	UniProtKB/TrEMBL
	ENSCAFT00000086156.2	UniProtKB/TrEMBL
	ENSCAFT00030001385.1	UniProtKB/TrEMBL
	ENSCAFT00030001403.1	UniProtKB/TrEMBL
	ENSCAFT00040019425.1	UniProtKB/TrEMBL
	ENSCAFT00040019453.1	UniProtKB/TrEMBL
	ENSCAFT00040019491.1	UniProtKB/TrEMBL
	ENSCAFT00040019618.1	UniProtKB/TrEMBL
	ENSCAFT00845011977.1	UniProtKB/TrEMBL
	ENSCAFT00845012014	ENTREZGENE
	ENSCAFT00845012014.1	UniProtKB/TrEMBL
	ENSCAFT00845012063	ENTREZGENE
	ENSCAFT00845012063.1	UniProtKB/TrEMBL
	ENSCAFT00845012098	ENTREZGENE
	ENSCAFT00845012098.1	UniProtKB/TrEMBL
	ENSCAFT00845012136.1	UniProtKB/TrEMBL
	ENSCAFT00845012168	ENTREZGENE
	ENSCAFT00845012168.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	DUF4749	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PDZ-LIM_domain	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Zasp-like_motif	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LDB3	ENTREZGENE
PANTHER	LIM DOMAIN-BINDING PROTEIN 3	UniProtKB/TrEMBL
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/TrEMBL
Pfam	DUF4749	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	SM00735	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF50156	UniProtKB/TrEMBL
UniProt	A0A8C0KIS5	ENTREZGENE
	A0A8C0LY43_CANLF	UniProtKB/TrEMBL
	A0A8C0R9S0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0S782	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0S7E5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0YUS2_CANLF	UniProtKB/TrEMBL
	A0A8I3MTC6_CANLF	UniProtKB/TrEMBL
	A0A8I3N042_CANLF	UniProtKB/TrEMBL
	A0A8I3N0Y5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N460_CANLF	UniProtKB/TrEMBL
	A0A8I3NFE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RTI3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NQK1	ENTREZGENE
	A0A8P0TF20_CANLF	UniProtKB/TrEMBL
UniProt Secondary	A0A8P0NQK1	UniProtKB/TrEMBL
VGNC ID	VGNC:42620	ENTREZGENE