RGD:84894123 Rat Genome Database

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Variant: RGD:84894123 -  Canis lupus familiaris

RGD ID: 84894123
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LDB3  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
CanFam3.1 4 34,408,055
JBrowse: View Region in Genome Browser (JBrowse)
Model
Breeds: Chinese indigenous dogs, Tibetan Mastiff




Gene Symbol:LDB3
Accession:XM_005619111
Location:EXON
Amino Acid Prediction: P to L (nonsynonymous)
Amino Acid Position: 338
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment     -1.533 -3.286 +1.753 192   XP_005619168   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL
QKSKRPIPISTTAPPVQSPLPVIPHQKDPAGDMSGSPTARSPGPLGPPELGPSSSPSFSQSPPRGGPGTEGAPGPRGQGR
PAQYNNPIGLYSAETLREMAQVYRMSLGGKAWGAGLPGGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQ
SRSFRILAQMTGTEYMQDPDEEALRRSRPQASAYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAAT
YSPSPGPSYSPAPYTPSLAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSASRQTLPRGAPTYGPPG
PQVSPLARGIVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQF
FAPICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEA
LGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV*

Gene Symbol:LDB3
Accession:XM_005619112
Location:EXON
Amino Acid Prediction: P to L (nonsynonymous)
Amino Acid Position: 327
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment     -1.115 -3.319 +2.204 144   XP_005619169   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL
QKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISM
YSQDAIMDAIAGQAQAQGSDFSGASPLASLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMT
GTEYMQDPDEEALRRSRPQASAYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAATYSPSPGPSYSP
APYTPSLAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSASRQTLPRGAPTYGPPGPQVSPLARGIV
QRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQFFAPICAKCNTK
IMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFI
CAVCHVNLEGQPFYSKKDKPLCKKHAHAINV*

Gene Symbol:LDB3
Accession:XM_005619113
Location:EXON
Amino Acid Prediction: P to L (nonsynonymous)
Amino Acid Position: 322
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -1.516 -3.330 +1.814 218   XP_005619170   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL
QKSKRPIPISTTAPPVQSPLPVIPHQKVVANSPANADYQERFNPSALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISM
YSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKNQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEYM
QDPDEEALRRSRPQASAYSLAKATSPAPASHPYSEASAAPAPKPRVVTTASIRPSVYQPVPAATYSPSPGPSYSPAPYTP
SLAPGPGYSPTPSAAYGGGPVESASRPPWVADDSFSQKFAPGKSSSSASRQTLPRGAPTYGPPGPQVSPLARGIVQRAER
FPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQSNVYCERCYEQFFAPICAKCNTKIMGEV
MHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYVNLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCH
VNLEGQPFYSKKDKPLCKKHAHAINV*

Gene Symbol:LDB3
Accession:XM_859925
Location:INTRON

Gene Symbol:LDB3
Accession:XM_859776
Location:INTRON

Tibetan Mastiff (TM4) Tibetan Mastiff (TM9) Chinese indigenous dogs (YJ3)