Symbol:
ITSN1
Name:
intersectin 1
RGD ID:
12224546
Description:
ENCODES a protein that exhibits kinase activator activity (ortholog); proline-rich region binding (ortholog); INVOLVED IN cell-cell signaling (ortholog); endocytosis (ortholog); negative regulation of neuron apoptotic process (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); FOUND IN apical dendrite (ortholog); calyx of Held (ortholog); clathrin-coated pit (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
intersectin-1; LOC100856635
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
ITSN1 (intersectin 1) HGNC
Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):
Itsn1 (intersectin 1 (SH3 domain protein 1A)) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Itsn1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Itsn1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
ITSN1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Itsn1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
ITSN1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
ITSN1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Itsn1 (intersectin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 31 29,144,754 - 29,360,134 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 31 28,243,620 - 28,459,926 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 31 28,451,006 - 28,667,391 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,661,479 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 31 28,317,804 - 28,534,014 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 31 28,331,715 - 28,548,460 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 31 28,831,446 - 29,047,794 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - PID (archival)
ITSN1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 31 29,144,754 - 29,360,134 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 31 28,243,620 - 28,459,926 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 31 28,451,006 - 28,667,391 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,661,479 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 31 28,317,804 - 28,534,014 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 31 28,331,715 - 28,548,460 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 31 28,831,446 - 29,047,794 (+) NCBI UU_Cfam_GSD_1.0
ITSN1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 21 33,642,501 - 33,899,861 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 21 33,642,400 - 33,899,861 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 21 35,014,807 - 35,272,165 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 21 33,936,654 - 34,183,479 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 21 33,936,653 - 34,183,479 NCBI Celera 21 20,214,405 - 20,461,193 (+) NCBI Celera Cytogenetic Map 21 q22.11 NCBI HuRef 21 20,493,109 - 20,739,668 (+) NCBI HuRef CHM1_1 21 34,577,248 - 34,824,084 (+) NCBI CHM1_1 T2T-CHM13v2.0 21 32,024,315 - 32,281,564 (+) NCBI T2T-CHM13v2.0
Itsn1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 16 91,526,198 - 91,717,479 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 16 91,526,169 - 91,717,485 (+) Ensembl GRCm39 Ensembl GRCm38 16 91,729,310 - 91,920,591 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 16 91,729,281 - 91,920,597 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 16 91,729,616 - 91,920,824 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 16 91,671,052 - 91,800,868 (+) NCBI MGSCv36 mm8 Celera 16 92,808,009 - 93,004,876 (+) NCBI Celera Cytogenetic Map 16 C4 NCBI cM Map 16 53.28 NCBI
Itsn1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 11 44,464,515 - 44,646,598 (+) NCBI GRCr8 mRatBN7.2 11 30,978,590 - 31,160,645 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 11 30,978,590 - 31,160,645 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 11 39,672,533 - 39,854,583 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 11 32,343,963 - 32,526,016 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 11 31,506,203 - 31,688,572 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 11 31,943,119 - 32,069,249 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 11 31,893,489 - 32,069,249 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 11 35,547,331 - 35,672,959 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 11 31,721,528 - 31,901,963 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 11 31,815,217 - 31,903,071 (+) NCBI Celera 11 30,687,099 - 30,812,424 (+) NCBI Celera Cytogenetic Map 11 q11 NCBI
Itsn1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955407 33,113,319 - 33,275,675 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955407 33,056,004 - 33,275,681 (+) NCBI ChiLan1.0 ChiLan1.0
ITSN1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 22 29,759,728 - 30,017,340 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 21 24,617,929 - 24,875,764 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 21 20,009,385 - 20,266,835 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 21 33,381,640 - 33,625,603 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 21 33,457,081 - 33,625,248 (+) Ensembl panpan1.1 panPan2
Itsn1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404971 28,789,742 - 28,977,174 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936500 8,468,940 - 8,612,942 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936500 8,490,514 - 8,678,127 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
ITSN1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 197,249,061 - 197,481,245 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 197,301,515 - 197,492,537 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 207,205,545 - 207,267,672 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
ITSN1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 2 58,298,529 - 58,543,297 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 2 58,301,399 - 58,543,281 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666071 805,376 - 1,047,516 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Itsn1
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
12
10
10
46
44
32
12
12
12
12
66
44
24
28
20
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00845043822 ⟹ ENSCAFP00845034340
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,661,479 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845044081 ⟹ ENSCAFP00845034539
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,661,479 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845044401 ⟹ ENSCAFP00845034794
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,615,130 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845044613 ⟹ ENSCAFP00845034953
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,615,130 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845044802 ⟹ ENSCAFP00845035109
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,599,471 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845044908 ⟹ ENSCAFP00845035194
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 31 28,451,116 - 28,597,776 (+) Ensembl
RefSeq Acc Id:
XM_014109747 ⟹ XP_013965222
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 31 29,144,758 - 29,360,134 (+) NCBI Dog10K_Boxer_Tasha 31 28,243,622 - 28,459,926 (+) NCBI
Sequence:
GAAGGAGGTAGAGAGGAGCGGAGGAGAGGGGAGGGAGCGCAGCTTGGTTGCTCCGTAGTACGGCGGCTCGCGAGGGAGAATCCCGAGCGGGCTCCGGGGCGCACGGGCGCACGGGCGGGCGGGGATGG
hide sequence
RefSeq Acc Id:
XM_022413236 ⟹ XP_022268944
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 31 29,144,755 - 29,360,134 (+) NCBI Dog10K_Boxer_Tasha 31 28,243,620 - 28,459,926 (+) NCBI
Sequence:
AGCGAAGGAGGTAGAGAGGAGCGGAGGAGAGGGGAGGGAGCGCAGCTTGGTTGCTCCGTAGTAC
hide sequence
RefSeq Acc Id:
XM_038443408 ⟹ XP_038299336
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 31 28,451,007 - 28,667,391 (+) NCBI
RefSeq Acc Id:
XM_038443409 ⟹ XP_038299337
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 31 28,521,489 - 28,667,391 (+) NCBI
RefSeq Acc Id:
XM_038443410 ⟹ XP_038299338
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 31 28,451,006 - 28,667,391 (+) NCBI
RefSeq Acc Id:
XM_038443411 ⟹ XP_038299339
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 31 28,451,023 - 28,616,201 (+) NCBI
RefSeq Acc Id:
XM_038461852 ⟹ XP_038317780
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source Dog10K_Boxer_Tasha 31 28,243,638 - 28,408,720 (+) NCBI
RefSeq Acc Id:
XM_038517830 ⟹ XP_038373758
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 31 28,317,806 - 28,534,014 (+) NCBI
RefSeq Acc Id:
XM_038517831 ⟹ XP_038373759
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 31 28,317,804 - 28,534,014 (+) NCBI
RefSeq Acc Id:
XM_038517832 ⟹ XP_038373760
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 31 28,317,823 - 28,482,837 (+) NCBI
RefSeq Acc Id:
XM_038581401 ⟹ XP_038437329
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 31 28,831,448 - 29,047,794 (+) NCBI
RefSeq Acc Id:
XM_038581402 ⟹ XP_038437330
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 31 28,831,446 - 29,047,794 (+) NCBI
RefSeq Acc Id:
XM_038581403 ⟹ XP_038437331
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 31 28,831,465 - 28,996,578 (+) NCBI
RefSeq Acc Id:
XM_038645781 ⟹ XP_038501709
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 31 28,331,717 - 28,548,460 (+) NCBI
RefSeq Acc Id:
XM_038645782 ⟹ XP_038501710
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 31 28,331,715 - 28,548,460 (+) NCBI
RefSeq Acc Id:
XM_038645783 ⟹ XP_038501711
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 31 28,331,733 - 28,497,281 (+) NCBI
RefSeq Acc Id:
XR_005305391
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 31 28,451,017 - 28,651,131 (+) NCBI
RefSeq Acc Id:
XR_005316738
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source Dog10K_Boxer_Tasha 31 28,243,634 - 28,443,689 (+) NCBI
RefSeq Acc Id:
XR_005348479
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 31 28,317,818 - 28,517,761 (+) NCBI
RefSeq Acc Id:
XR_005382307
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 31 28,831,460 - 29,031,549 (+) NCBI
RefSeq Acc Id:
XR_005416030
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 31 28,331,729 - 28,532,240 (+) NCBI
RefSeq Acc Id:
XP_013965222 ⟸ XM_014109747
- Peptide Label:
isoform X1
- UniProtKB:
L7MTN8 (UniProtKB/TrEMBL), A0A8C0T336 (UniProtKB/TrEMBL), A0A8C0R7L1 (UniProtKB/TrEMBL), A0A8C0LN04 (UniProtKB/TrEMBL)
- Sequence:
MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPAFGIGGIASMPPLTA
hide sequence
RefSeq Acc Id:
XP_022268944 ⟸ XM_022413236
- Peptide Label:
isoform X2
- UniProtKB:
A0A8P0NZL0 (UniProtKB/TrEMBL), A0A8C0LN04 (UniProtKB/TrEMBL)
- Sequence:
MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWAL
hide sequence
RefSeq Acc Id:
XP_038373759 ⟸ XM_038517831
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_038373758 ⟸ XM_038517830
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_038373760 ⟸ XM_038517832
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_038501710 ⟸ XM_038645782
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_038501709 ⟸ XM_038645781
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_038501711 ⟸ XM_038645783
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_038299338 ⟸ XM_038443410
- Peptide Label:
isoform X2
- UniProtKB:
A0A8P0NZL0 (UniProtKB/TrEMBL), A0A8C0LN04 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038299336 ⟸ XM_038443408
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C0T336 (UniProtKB/TrEMBL), L7MTN8 (UniProtKB/TrEMBL), A0A8C0R7L1 (UniProtKB/TrEMBL), A0A8C0LN04 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038299339 ⟸ XM_038443411
- Peptide Label:
isoform X3
- UniProtKB:
A0A8C0LH62 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038299337 ⟸ XM_038443409
- Peptide Label:
isoform X4
- UniProtKB:
A0A8C0LN04 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038317780 ⟸ XM_038461852
- Peptide Label:
isoform X3
- UniProtKB:
A0A8C0LH62 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038437330 ⟸ XM_038581402
- Peptide Label:
isoform X2
- UniProtKB:
A0A8C0LN04 (UniProtKB/TrEMBL), A0A8P0NZL0 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038437329 ⟸ XM_038581401
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C0LN04 (UniProtKB/TrEMBL), A0A8C0R7L1 (UniProtKB/TrEMBL), A0A8C0T336 (UniProtKB/TrEMBL), L7MTN8 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038437331 ⟸ XM_038581403
- Peptide Label:
isoform X3
- UniProtKB:
A0A8C0LH62 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCAFP00845034794 ⟸ ENSCAFT00845044401
Ensembl Acc Id:
ENSCAFP00845034953 ⟸ ENSCAFT00845044613
Ensembl Acc Id:
ENSCAFP00845035194 ⟸ ENSCAFT00845044908
Ensembl Acc Id:
ENSCAFP00845034340 ⟸ ENSCAFT00845043822
Ensembl Acc Id:
ENSCAFP00845035109 ⟸ ENSCAFT00845044802
Ensembl Acc Id:
ENSCAFP00845034539 ⟸ ENSCAFT00845044081
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-01-14
ITSN1
intersectin 1
LOC100856635
intersectin-1
Data merged from RGD:12262716
737654 PROVISIONAL
