Symbol:
GKN1
Name:
gastrokine 1
RGD ID:
12135324
Description:
ENCODES a protein that exhibits growth factor activity (inferred); INVOLVED IN positive regulation of cell population proliferation (inferred); signal transduction (inferred); ASSOCIATED WITH adenocarcinoma (ortholog); ovarian cyst (ortholog); Stomach Neoplasms (ortholog); FOUND IN extracellular region (inferred); secretory granule (inferred); INTERACTS WITH masitinib
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
gastrokine-1
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Species
Gene symbol and name
Data Source
Assertion derived from
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Orthologs 1
Homo sapiens (human):
GKN1 (gastrokine 1)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):
Gkn1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Gkn1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Gkn1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
GKN1 (gastrokine-1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Gkn1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
GKN1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
GKN1 (gastrokine 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 10 67,788,329 - 67,793,445 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 10 67,788,110 - 67,793,589 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 10 67,677,625 - 67,682,902 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 10 68,810,000 - 68,815,276 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 10 68,809,829 - 68,815,215 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 10 68,491,450 - 68,496,462 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 10 68,792,706 - 68,797,978 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 10 69,087,881 - 69,092,894 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
GKN1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 10 67,788,329 - 67,793,445 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 10 67,788,110 - 67,793,589 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 10 67,677,625 - 67,682,902 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 10 68,810,000 - 68,815,276 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 10 68,809,829 - 68,815,215 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 10 68,491,450 - 68,496,462 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 10 68,792,706 - 68,797,978 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 10 69,087,881 - 69,092,894 (+) NCBI UU_Cfam_GSD_1.0
GKN1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 68,974,636 - 68,980,976 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 68,974,573 - 68,980,980 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 69,201,768 - 69,208,108 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 69,055,209 - 69,061,616 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 69,113,417 - 69,119,763 NCBI Celera 2 69,052,436 - 69,058,843 (+) NCBI Celera Cytogenetic Map 2 p13.3 NCBI HuRef 2 68,937,927 - 68,944,334 (+) NCBI HuRef CHM1_1 2 69,131,023 - 69,137,429 (+) NCBI CHM1_1 T2T-CHM13v2.0 2 68,987,051 - 68,993,391 (+) NCBI T2T-CHM13v2.0
Gkn1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 87,322,635 - 87,327,897 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 87,322,632 - 87,327,924 (-) Ensembl GRCm39 Ensembl GRCm38 6 87,345,653 - 87,350,915 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 87,345,650 - 87,350,942 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 87,295,647 - 87,300,909 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 87,311,287 - 87,316,549 (-) NCBI MGSCv36 mm8 Celera 6 89,284,666 - 89,289,929 (-) NCBI Celera Cytogenetic Map 6 D1 NCBI cM Map 6 37.96 NCBI
Gkn1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 4 121,347,417 - 121,352,705 (-) NCBI GRCr8 mRatBN7.2 4 119,790,101 - 119,795,389 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 4 119,790,101 - 119,795,389 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 4 125,261,663 - 125,267,030 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 4 121,036,416 - 121,041,783 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 4 119,660,661 - 119,666,028 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 4 119,143,070 - 119,148,358 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 119,143,070 - 119,148,358 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 4 183,711,680 - 183,717,243 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 4 121,496,151 - 121,501,439 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 4 121,740,631 - 121,745,920 (-) NCBI Celera 4 108,760,377 - 108,765,665 (-) NCBI Celera Cytogenetic Map 4 q34 NCBI
Gkn1 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955424 16,046,662 - 16,049,687 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955424 16,046,662 - 16,051,235 (-) NCBI ChiLan1.0 ChiLan1.0
GKN1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 12 57,434,605 - 57,478,862 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2A 57,438,553 - 57,444,940 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2A 69,015,692 - 69,022,155 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2A 70,137,447 - 70,143,918 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 2A 70,137,447 - 70,144,040 (+) Ensembl panpan1.1 panPan2
Gkn1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024406292 15,306,926 - 15,312,244 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936491 13,259,073 - 13,264,213 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936491 13,259,073 - 13,264,213 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GKN1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 3 73,420,359 - 73,426,592 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 3 73,420,359 - 73,426,472 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 3 76,861,574 - 76,867,686 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GKN1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 14 38,145,076 - 38,291,187 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 14 38,145,559 - 38,152,126 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666045 73,838,684 - 73,847,183 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
3
1
10
5
6
6
2
8
7
7
2
6
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00000005245 ⟹ ENSCAFP00000004854
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 10 67,788,110 - 67,793,589 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00000074190 ⟹ ENSCAFP00000050663
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 10 67,788,110 - 67,793,589 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845042410 ⟹ ENSCAFP00845033250
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 10 68,809,829 - 68,815,215 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845042464 ⟹ ENSCAFP00845033288
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 10 68,809,829 - 68,815,215 (+) Ensembl
RefSeq Acc Id:
XM_005626250 ⟹ XP_005626307
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 10 67,788,329 - 67,793,445 (+) NCBI Dog10K_Boxer_Tasha 10 67,677,625 - 67,682,902 (+) NCBI
Sequence:
AAATGGAGAAAGATAAATCTTGGGCCCACCCTAGTCACACCTCTTTTAAGTAAAGCTGGTTAAGTACAAATATGAGAAGAGTTCTTGTCTGAGCTCATGCCGGCCTCCTCTTCTACTCCATTGCTCTG GTGAAGCCAAGATGAAGCTCACAATTGTCTTCGCTGGACTTCTTGGAGTCTTCCTGACCCCAGCCCTTGCTTCCTCCGAAATCAACATTGGCGGGAACAGCAACAGCGGTGCAAGTGGGCAACAGTCC GTGAGCGTCAACAATGAGCATAATGTGGCCAATGTGGACAATAACAACGGATGGGACTCTTGGAATGCCCTGTGGGACTACAACACTGACCTTGCTGCAATCAGACTCTTTGGCAAGAAGAAATGCAT TGTGCACAGAATGAACAAGAATGTCATGCCCTCTCTTCAGACTCTTGACACGCTGGTCAAGGAAAAGAAGCTTCAGGGAAAAGGACCAGAAGGACCACCTCCCAAGGGCCTGATGTACTCAGTTAACC CTGAAGAAGTCAAAGACCTAAACAAATTAGGAAAACCCATCGCTAACATGTGCAGGGGGATTCCAACATACATGGCCGAGGAGATTGAAGGAGCAAGCCTTTTCTTTACTTCAGGAAAGTGCTTCAGT GCTGATATATTATGGATTCTGAACATTTCCTACTGTAGCAGTACAGTGGAGTATTAAAAAACATTTTTGGGACACCTGGGGGCTCAGTGGTTGAGCATCCACCTTTGGCTCCGGCCATGACCTCGGGG
hide sequence
RefSeq Acc Id:
XM_038489646 ⟹ XP_038345574
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 10 68,491,450 - 68,496,462 (+) NCBI
RefSeq Acc Id:
XM_038549548 ⟹ XP_038405476
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 10 69,087,881 - 69,092,894 (+) NCBI
RefSeq Acc Id:
XM_038615423 ⟹ XP_038471351
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 10 68,792,706 - 68,797,978 (+) NCBI
RefSeq Acc Id:
XM_038680814 ⟹ XP_038536742
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 10 68,810,000 - 68,815,276 (+) NCBI
RefSeq Acc Id:
XP_005626307 ⟸ XM_005626250
- UniProtKB:
A0A8I3PKG9 (UniProtKB/TrEMBL), A0A8P0N661 (UniProtKB/TrEMBL), A0A8C0JFX9 (UniProtKB/TrEMBL)
- Sequence:
MKLTIVFAGLLGVFLTPALASSEINIGGNSNSGASGQQSVSVNNEHNVANVDNNNGWDSWNALWDYNTDLAAIRLFGKKKCIVHRMNKNVMPSLQTLDTLVKEKKLQGKGPEGPPPKGLMYSVNPEEV KDLNKLGKPIANMCRGIPTYMAEEIEGASLFFTSGKCFSADILWILNISYCSSTVEY
hide sequence
Ensembl Acc Id:
ENSCAFP00000004854 ⟸ ENSCAFT00000005245
Ensembl Acc Id:
ENSCAFP00000050663 ⟸ ENSCAFT00000074190
RefSeq Acc Id:
XP_038345574 ⟸ XM_038489646
RefSeq Acc Id:
XP_038471351 ⟸ XM_038615423
Ensembl Acc Id:
ENSCAFP00845033250 ⟸ ENSCAFT00845042410
Ensembl Acc Id:
ENSCAFP00845033288 ⟸ ENSCAFT00845042464
RGD ID: 13685100
Promoter ID: EPDNEW_C3168
Type: multiple initiation site
Name: GKN1_1
Description: gastrokine 1
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Dog Assembly Chr Position (strand) Source CanFam3.1 10 67,788,425 - 67,788,485 EPDNEW