APOA4 (apolipoprotein A4) - Rat Genome Database

Name: APOA4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: APOA4 (apolipoprotein A4) Canis lupus familiaris

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Symbol:

APOA4

Name:

apolipoprotein A4

RGD ID:

12130431

Description:

ENCODES a protein that exhibits antioxidant activity (inferred); cholesterol transfer activity (inferred); copper ion binding (inferred); INVOLVED IN peripheral nervous system axon regeneration (ortholog); positive regulation of CoA-transferase activity (ortholog); positive regulation of lipoprotein lipase activity (ortholog); PARTICIPATES IN altered lipoprotein metabolic pathway; lipoprotein metabolic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anemia (ortholog); atherosclerosis (ortholog); FOUND IN chylomicron (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Apo-AIV; ApoA-IV; apolipoprotein A-IV

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	APOA4 (apolipoprotein A4)	HGNC	HomoloGene, NCBI
Mus musculus (house mouse):	Apoa4 (apolipoprotein A-IV)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Apoa4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Apoa4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	APOA4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Apoa4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	APOA4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	APOA4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Apoa4 (apolipoprotein A4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	16,751,588 - 16,754,215 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	16,751,799 - 16,754,837 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	16,803,839 - 16,806,395 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	16,698,167 - 16,700,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	16,698,240 - 16,701,326 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	16,835,250 - 16,837,800 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	16,737,834 - 16,740,384 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	16,780,743 - 16,783,293 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

anemia (ISO)

atherosclerosis (ISO)

cardiovascular system disease (ISO)

CD3epsilon deficiency (ISO)

Chemically-Induced Disorders (ISO)

chromosome 11 partial duplication syndrome (ISO)

chronic kidney disease (ISO)

Chronic Pancreatitis (ISO)

colitis (ISO)

Coronary Disease (ISO)

Crohn's disease (ISO)

diabetic retinopathy (ISO)

Dwarfism (ISO)

Experimental Arthritis (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Liver Neoplasms (ISO)

Familial Pancreatic Carcinoma (ISO)

glaucoma (ISO)

graft-versus-host disease (ISO)

Guillain-Barre syndrome (ISO)

hepatocellular carcinoma (ISO)

Huntington's disease (ISO)

Hyperlipoproteinemia Type II (ISO)

Hyperlipoproteinemias (ISO)

Hypertriglyceridemia (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

Inflammation (ISO)

inflammatory bowel disease 28 (ISO)

intellectual disability (ISO)

intermediate coronary syndrome (ISO)

Intervertebral Disc Displacement (ISO)

isolated microphthalmia 5 (ISO)

Leber hereditary optic neuropathy (ISO)

major depressive disorder (ISO)

myocardial infarction (ISO)

neovascular inflammatory vitreoretinopathy (ISO)

nephronophthisis 15 (ISO)

Peripheral Nerve Injuries (ISO)

peripheral nervous system disease (ISO)

polyneuropathy (ISO)

primary hypoalphalipoproteinemia 2 (ISO)

RASopathy (ISO)

relapsing-remitting multiple sclerosis (ISO)

retinal detachment (ISO)

rheumatoid arthritis (ISO)

schizophrenia (ISO)

Seasonal Allergic Rhinitis (ISO)

ulcerative colitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acylglycerol homeostasis (IBA)

cholesterol efflux (IBA,IEA)

cholesterol homeostasis (IEA)

cholesterol metabolic process (IBA,IEA)

high-density lipoprotein particle remodeling (IEA)

hydrogen peroxide catabolic process (IEA)

innate immune response in mucosa (IEA)

leukocyte cell-cell adhesion (IEA)

lipid catabolic process (IEA)

lipid homeostasis (IEA)

lipid transport (IEA)

lipoprotein metabolic process (IEA)

negative regulation of plasma lipoprotein oxidation (IEA)

peripheral nervous system axon regeneration (ISO)

phosphatidylcholine metabolic process (IEA)

phospholipid efflux (IBA,IEA)

positive regulation of CoA-transferase activity (ISO)

positive regulation of fatty acid biosynthetic process (IEA)

positive regulation of lipoprotein lipase activity (ISO)

positive regulation of triglyceride catabolic process (IEA)

protein-lipid complex assembly (IEA)

regulation of cholesterol transport (IEA)

regulation of intestinal cholesterol absorption (IEA,ISO)

removal of superoxide radicals (IEA)

response to lipid hydroperoxide (IEA)

response to stilbenoid (IEA)

response to triglyceride (ISO)

reverse cholesterol transport (IEA)

very-low-density lipoprotein particle remodeling (IEA)

Cellular Component

cell surface (IEA)

chylomicron (IBA,IEA,ISO)

extracellular region (IEA)

extracellular space (IEA)

extracellular vesicle (IBA)

high-density lipoprotein particle (IBA,IEA)

low-density lipoprotein particle (IBA)

synapse (ISO)

very-low-density lipoprotein particle (IBA,IEA)

Molecular Function

antioxidant activity (IEA)

cholesterol transfer activity (IBA,IEA)

copper ion binding (IEA)

identical protein binding (IEA)

lipid binding (IEA)

phosphatidylcholine binding (IEA)

phosphatidylcholine-sterol O-acyltransferase activator activity (IBA,IEA)

phospholipid binding (IBA)

protein binding (ISO)

protein homodimerization activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

altered lipoprotein metabolic pathway (ISO)

lipoprotein metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

APOA4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	16,751,588 - 16,754,215 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	16,751,799 - 16,754,837 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	16,803,839 - 16,806,395 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	16,698,167 - 16,700,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	16,698,240 - 16,701,326 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	16,835,250 - 16,837,800 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	16,737,834 - 16,740,384 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	16,780,743 - 16,783,293 (+)	NCBI		UU_Cfam_GSD_1.0

APOA4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	116,820,700 - 116,823,304 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	116,820,700 - 116,823,304 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	116,691,416 - 116,694,020 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	116,196,628 - 116,199,221 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	116,196,628 - 116,199,162	NCBI
Celera	11	113,849,234 - 113,851,827 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	112,623,690 - 112,626,283 (-)	NCBI		HuRef
CHM1_1	11	116,576,178 - 116,578,767 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	116,835,812 - 116,838,412 (-)	NCBI		T2T-CHM13v2.0

Apoa4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	46,152,142 - 46,154,756 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	46,151,994 - 46,154,757 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	46,240,844 - 46,243,458 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	46,240,696 - 46,243,459 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	46,048,927 - 46,051,541 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	45,992,149 - 45,994,285 (+)	NCBI		MGSCv36	mm8
Celera	9	43,529,774 - 43,532,388 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	25.36	NCBI

Apoa4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	55,435,779 - 55,438,160 (+)	NCBI		GRCr8
mRatBN7.2	8	46,539,083 - 46,541,464 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	46,539,082 - 46,541,469 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	52,040,348 - 52,042,728 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	50,319,122 - 50,321,502 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	48,183,398 - 48,185,778 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	50,536,983 - 50,539,371 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	50,537,009 - 50,539,376 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	49,163,055 - 49,165,333 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	49,233,142 - 49,233,431 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	49,245,005 - 49,245,297 (+)	NCBI
Celera	8	46,121,074 - 46,123,455 (+)	NCBI		Celera
RH 3.4 Map	8	473.3	RGD
Cytogenetic Map	8	q22	NCBI

Apoa4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	18,155,801 - 18,160,701 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	18,158,095 - 18,160,636 (-)	NCBI	ChiLan1.0	ChiLan1.0

APOA4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	117,524,912 - 117,527,516 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	118,630,121 - 118,632,725 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	111,659,186 - 111,661,790 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	115,591,788 - 115,594,382 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	115,591,788 - 115,594,382 (-)	Ensembl	panpan1.1		panPan2

Apoa4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	99,177,114 - 99,179,837 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	2,098,683 - 2,101,127 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	2,098,683 - 2,101,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

APOA4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	44,201,508 - 44,204,206 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	44,201,587 - 44,204,072 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	49,273,837 - 49,276,322 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

APOA4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	108,186,627 - 108,190,508 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	108,186,921 - 108,189,698 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	17,861,078 - 17,863,578 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Apoa4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	12,233,593 - 12,239,763 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	12,237,329 - 12,240,013 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in APOA4
29 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system
3	2	1	18	14	6	6	2	6	5	17	9	8	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038474927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038536054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038600247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038664797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_546510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000021121 ⟹ ENSCAFP00000019615

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	16,751,799 - 16,754,837 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845007736 ⟹ ENSCAFP00845006125

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	16,698,240 - 16,701,326 (+)	Ensembl

RefSeq Acc Id:

XM_038474927 ⟹ XP_038330855

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	16,835,250 - 16,837,800 (+)	NCBI

RefSeq Acc Id:

XM_038536054 ⟹ XP_038391982

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	16,780,743 - 16,783,293 (+)	NCBI

RefSeq Acc Id:

XM_038600247 ⟹ XP_038456175

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	16,737,834 - 16,740,384 (+)	NCBI

RefSeq Acc Id:

XM_038664797 ⟹ XP_038520725

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	16,698,167 - 16,700,719 (+)	NCBI

RefSeq Acc Id:

XM_546510 ⟹ XP_546510

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	16,751,588 - 16,754,215 (+)	NCBI
Dog10K_Boxer_Tasha	5	16,803,839 - 16,806,395 (+)	NCBI

Sequence:

show sequence

AAGAGGCCTCCTGGGAATGTGTCACCTTCCAACGTGGAGTCACATTGGGGAAAGAGGCAGGAAG
GCAGCCTGGGATGGGGTTTATATGTCTGGCTGGCTCTGAGATTGAGTCAGTTCTGACAGCAGCA
CAGGTTCTGGCTCTCTGGTCCCATCTGATTCCAGAAAGATCCAGTGCAGCGCGAGGCTTCTCCA
GCCCAGTGAGAAGCCCAGGATGTTCCTGAAGGCTGTGGTTCTGACCCTGTCCCTGGTGGCCATC
ACCGGTGCCCGGGCTGAGGTCAGTGCCGACCAGGTGGCCACTGTAGTGTGGGACTACTTCAGTC
AGCTGAGCAACAATGCCAAGGAAGCTGTGGAACATCTCCAGCAGTCTGAGCTCACCCAGCAGCT
CAATGCCCTCTTCCAGGACAAGATGGGGCAAGTGAACACCTACACCGATAACCTGCAGAAGAAG
CTCGTGCCCTTTGCCACGGAGCTGCACGAACGCCTGAGCAAAGACTCGGAGAAGCTGAAGGAAG
AGATTCGGAAGGAACTGGAGGAGCTGCGGGCCCGGCTGCTGCCCCACGCCAGCGAGGTGAGCCA
GAAGATCGGGGACAACATGCGCGAGCTGCAGCAGCGCTTCGGGCCGTACGCGGAGGAGCTGCGC
ACCCAGGTCAACACCCACGCGGAGCAGCTGCGCAACCAACTGACATCGCACGCGCAGCGCATGC
AGAGCGCGCTGCGCCAGAACGTGGACGACCTGCACTCCTCCCTGACCCCCTTCGCCGATGAGCT
AAAGGCCAAGATCGACCAGAACGTGGAGGAGCTCAAGGGGCACCTCACTCCCTACACCGACGAG
CTCAAGGTCAAGATCGACCAGAACGTGGAGGAGCTGCGCCGCAGCCTGGCGCCCTACGCGCAGG
ATGTCCAGGAGAAGCTCAACCACCAGCTCGAGGGGCTGGCCTTCCAGATGAAGAAGAACGCCGA
GGAGCTCAAGGCCAAGATCTCAGCCAACGCCGAAGAGCTGCGGCAGAGGCTGGCGCCCGTGGCT
GAGGACGTGCGTGGCAAGCTGAAGGACAACACCGCGGGGCTGCACAAGTCTCTGGCCGAGCTGA
GCAGCCGCCTGGACCAGCAGGTGGAGGAGTTCCGCCGCAACGTGGGGCCCTACGGCGAGACCTT
CAACAAAGCCCTGCTGCAGCAGGTGGAGGAGCTTAGGCAGAAGCTGGGCCCCTATGCGGGGGAT
ATGGAAGACCACCTGAGCTTCCTGGAGAAGGATCTGAGGGACAAGGTCAACTCTTTTTTCAGCA
CCCTCCAGGAGAAAGAGAGCCAGGACACGCCTGTGGCCCTCCCCAAGCAGGAGCAGGAGCAGAG
CGCCGTCCCTTTAGAGAGCTGAGCTGTCCATGGTGCTCACGGCCTACCATGGACACCTGCCCGG
CCCGGCCACCTGTCTGTCTGTCTGCCCCAAGGCAGTTCTGGCACAAGCTTGAGGACGTATGTCC
GGTGGAAAATGAGACTACCTCTCACTACTCAATAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038330855	(Get FASTA)	NCBI Sequence Viewer
	XP_038391982	(Get FASTA)	NCBI Sequence Viewer
	XP_038456175	(Get FASTA)	NCBI Sequence Viewer
	XP_038520725	(Get FASTA)	NCBI Sequence Viewer
	XP_546510	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	E2RE76	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000019615.4
	ENSCAFP00030009937.1
	ENSCAFP00040004678.1
	ENSCAFP00845006125
	ENSCAFP00845006125.1

RefSeq Acc Id:

XP_546510 ⟸ XM_546510

- UniProtKB:

A0A8C0MIM6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFLKAVVLTLSLVAITGARAEVSADQVATVVWDYFSQLSNNAKEAVEHLQQSELTQQLNALFQD
KMGQVNTYTDNLQKKLVPFATELHERLSKDSEKLKEEIRKELEELRARLLPHASEVSQKIGDNM
RELQQRFGPYAEELRTQVNTHAEQLRNQLTSHAQRMQSALRQNVDDLHSSLTPFADELKAKIDQ
NVEELKGHLTPYTDELKVKIDQNVEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKI
SANAEELRQRLAPVAEDVRGKLKDNTAGLHKSLAELSSRLDQQVEEFRRNVGPYGETFNKALLQ
QVEELRQKLGPYAGDMEDHLSFLEKDLRDKVNSFFSTLQEKESQDTPVALPKQEQEQSAVPLES

hide sequence

Ensembl Acc Id:

ENSCAFP00000019615 ⟸ ENSCAFT00000021121

RefSeq Acc Id:

XP_038330855 ⟸ XM_038474927

RefSeq Acc Id:

XP_038456175 ⟸ XM_038600247

RefSeq Acc Id:	XP_038520725 ⟸ XM_038664797
- UniProtKB:	A0A8C0MIM6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038391982 ⟸ XM_038536054
- UniProtKB:	A0A8C0MIM6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845006125 ⟸ ENSCAFT00845007736

Promoters

RGD ID:

13683143

Promoter ID:

EPDNEW_C1213

Type:

single initiation site

Name:

APOA4_1

Description:

Apolipoprotein A-IV

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	16,751,700 - 16,751,760	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013306	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006178	UniProtKB/TrEMBL
	ENSCAFG00040002864	UniProtKB/TrEMBL
	ENSCAFG00845004295	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000021121.5	UniProtKB/TrEMBL
	ENSCAFT00030011362.1	UniProtKB/TrEMBL
	ENSCAFT00040005447.1	UniProtKB/TrEMBL
	ENSCAFT00845007736	ENTREZGENE
	ENSCAFT00845007736.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.2890	UniProtKB/Swiss-Prot
	Apolipoprotein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	ApoA_E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Apolipoprotein_A1/A4/E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	cfa:489392	UniProtKB/TrEMBL
NCBI Gene	APOA4	ENTREZGENE
PANTHER	APOLIPOPROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	APOLIPOPROTEIN A-IV	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Apolipoprotein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Apolipoprotein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Apolipoprotein A-I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C0MIM6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MKL7_CANLF	UniProtKB/TrEMBL
	A0A8P0SHW2_CANLF	UniProtKB/TrEMBL
	APOA4_CANLF	UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID	VGNC:53263	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations