Symbol:
APOA4
Name:
apolipoprotein A4
RGD ID:
12130431
Description:
ENCODES a protein that exhibits antioxidant activity (inferred); cholesterol transfer activity (inferred); copper ion binding (inferred); INVOLVED IN peripheral nervous system axon regeneration (ortholog); response to triglyceride (ortholog); PARTICIPATES IN altered lipoprotein metabolic pathway; lipoprotein metabolic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anemia (ortholog); atherosclerosis (ortholog); FOUND IN chylomicron (ortholog); synapse (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
Apo-AIV; ApoA-IV; apolipoprotein A-IV
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 16,751,588 - 16,754,215 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 16,751,799 - 16,754,837 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 16,803,839 - 16,806,395 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 16,698,167 - 16,700,719 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 16,698,240 - 16,701,326 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 16,835,250 - 16,837,800 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 16,737,834 - 16,740,384 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 16,780,743 - 16,783,293 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
APOA4 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 16,751,588 - 16,754,215 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 16,751,799 - 16,754,837 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 16,803,839 - 16,806,395 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 16,698,167 - 16,700,719 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 16,698,240 - 16,701,326 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 16,835,250 - 16,837,800 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 16,737,834 - 16,740,384 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 16,780,743 - 16,783,293 (+) NCBI UU_Cfam_GSD_1.0
APOA4 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 11 116,820,700 - 116,823,304 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 11 116,820,700 - 116,823,304 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 11 116,691,416 - 116,694,020 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 11 116,196,628 - 116,199,221 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 11 116,196,628 - 116,199,162 NCBI Celera 11 113,849,234 - 113,851,827 (-) NCBI Celera Cytogenetic Map 11 q23.3 NCBI HuRef 11 112,623,690 - 112,626,283 (-) NCBI HuRef CHM1_1 11 116,576,178 - 116,578,767 (-) NCBI CHM1_1 T2T-CHM13v2.0 11 116,835,812 - 116,838,412 (-) NCBI T2T-CHM13v2.0
Apoa4 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 9 46,152,142 - 46,154,756 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 9 46,151,994 - 46,154,757 (+) Ensembl GRCm39 Ensembl GRCm38 9 46,240,844 - 46,243,458 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 9 46,240,696 - 46,243,459 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 9 46,048,927 - 46,051,541 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 9 45,992,149 - 45,994,285 (+) NCBI MGSCv36 mm8 Celera 9 43,529,774 - 43,532,388 (+) NCBI Celera Cytogenetic Map 9 A5.2 NCBI cM Map 9 25.36 NCBI
Apoa4 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 55,435,779 - 55,438,160 (+) NCBI GRCr8 mRatBN7.2 8 46,539,083 - 46,541,464 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 46,539,082 - 46,541,469 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 8 52,040,348 - 52,042,728 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 50,319,122 - 50,321,502 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 48,183,398 - 48,185,778 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 50,536,983 - 50,539,371 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 50,537,009 - 50,539,376 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 49,163,055 - 49,165,333 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 49,233,142 - 49,233,431 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 8 49,245,005 - 49,245,297 (+) NCBI Celera 8 46,121,074 - 46,123,455 (+) NCBI Celera RH 3.4 Map 8 473.3 RGD Cytogenetic Map 8 q22 NCBI
Apoa4 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955412 18,155,801 - 18,160,701 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955412 18,158,095 - 18,160,636 (-) NCBI ChiLan1.0 ChiLan1.0
APOA4 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 9 117,524,912 - 117,527,516 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 11 118,630,121 - 118,632,725 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 11 111,659,186 - 111,661,790 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 11 115,591,788 - 115,594,382 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 11 115,591,788 - 115,594,382 (-) Ensembl panpan1.1 panPan2
Apoa4 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404947 99,177,114 - 99,179,837 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936542 2,098,683 - 2,101,127 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936542 2,098,683 - 2,101,127 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
APOA4 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 9 44,201,508 - 44,204,206 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 9 44,201,587 - 44,204,072 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 9 49,273,837 - 49,276,322 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
APOA4 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 1 108,186,627 - 108,190,508 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 1 108,186,921 - 108,189,698 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666043 17,861,078 - 17,863,578 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Apoa4
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
3
2
1
18
14
6
6
2
6
5
17
9
8
11
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00000021121 ⟹ ENSCAFP00000019615
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 5 16,751,799 - 16,754,837 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845007736 ⟹ ENSCAFP00845006125
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 5 16,698,240 - 16,701,326 (+) Ensembl
RefSeq Acc Id:
XM_038474927 ⟹ XP_038330855
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 5 16,835,250 - 16,837,800 (+) NCBI
RefSeq Acc Id:
XM_038536054 ⟹ XP_038391982
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 5 16,780,743 - 16,783,293 (+) NCBI
RefSeq Acc Id:
XM_038600247 ⟹ XP_038456175
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 5 16,737,834 - 16,740,384 (+) NCBI
RefSeq Acc Id:
XM_038664797 ⟹ XP_038520725
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 5 16,698,167 - 16,700,719 (+) NCBI
RefSeq Acc Id:
XM_546510 ⟹ XP_546510
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 5 16,751,588 - 16,754,215 (+) NCBI Dog10K_Boxer_Tasha 5 16,803,839 - 16,806,395 (+) NCBI
Sequence:
AAGAGGCCTCCTGGGAATGTGTCACCTTCCAACGTGGAGTCACATTGGGGAAAGAGGCAGGAAGGCAGCCTGGGATGGGGTTTATATGTCTGGCTGGCTCTGAGATTGAGTCAGTTCTGACAGCAGCA
hide sequence
RefSeq Acc Id:
XP_546510 ⟸ XM_546510
- UniProtKB:
A0A8C0MIM6 (UniProtKB/TrEMBL)
- Sequence:
MFLKAVVLTLSLVAITGARAEVSADQVATVVWDYFSQLSNNAKEAVEHLQQSELTQQLNALFQDKMGQVNTYTDNLQKKLVPFATELHERLSKDSEKLKEEIRKELEELRARLLPHASEVSQKIGDNM
hide sequence
Ensembl Acc Id:
ENSCAFP00000019615 ⟸ ENSCAFT00000021121
RefSeq Acc Id:
XP_038330855 ⟸ XM_038474927
RefSeq Acc Id:
XP_038456175 ⟸ XM_038600247
RefSeq Acc Id:
XP_038520725 ⟸ XM_038664797
- UniProtKB:
A0A8C0MIM6 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038391982 ⟸ XM_038536054
- UniProtKB:
A0A8C0MIM6 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCAFP00845006125 ⟸ ENSCAFT00845007736
RGD ID: 13683143 Promoter ID: EPDNEW_C1213 Type: single initiation site Name: APOA4_1 Description: Apolipoprotein A-IV SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Dog Assembly Chr Position (strand) Source CanFam3.1 5 16,751,700 - 16,751,760 EPDNEW
