Symbol:
TNFAIP1
Name:
TNF alpha induced protein 1
RGD ID:
12066550
Description:
ENCODES a protein that exhibits cyclin binding (ortholog); INVOLVED IN positive regulation of DNA replication (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (inferred); cytoplasm (inferred); endosome (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
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Orthologs 1
Homo sapiens (human):
TNFAIP1 (TNF alpha induced protein 1)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Tnfaip1 (tumor necrosis factor, alpha-induced protein 1 (endothelial))
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Tnfaip1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Tnfaip1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
TNFAIP1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Tnfaip1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
TNFAIP1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
TNFAIP1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Tnfaip1 (TNF alpha induced protein 1)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 42,588,009 - 42,597,961 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 42,588,112 - 42,595,596 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 41,744,941 - 41,754,881 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 43,407,163 - 43,417,110 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 43,407,185 - 43,417,107 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 42,191,412 - 42,201,351 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 42,482,639 - 42,492,584 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 42,559,687 - 42,569,626 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
TNFAIP1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 42,588,009 - 42,597,961 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 42,588,112 - 42,595,596 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 41,744,941 - 41,754,881 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 43,407,163 - 43,417,110 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 43,407,185 - 43,417,107 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 42,191,412 - 42,201,351 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 42,482,639 - 42,492,584 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 42,559,687 - 42,569,626 (+) NCBI UU_Cfam_GSD_1.0
TNFAIP1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 28,335,761 - 28,347,009 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 28,335,602 - 28,347,009 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 26,662,787 - 26,674,035 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 23,686,913 - 23,698,160 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 17 23,686,912 - 23,698,160 NCBI Celera 17 23,524,290 - 23,535,780 (+) NCBI Celera Cytogenetic Map 17 q11.2 NCBI HuRef 17 22,870,942 - 22,882,432 (+) NCBI HuRef CHM1_1 17 26,725,440 - 26,736,930 (+) NCBI CHM1_1 T2T-CHM13v2.0 17 29,277,609 - 29,288,860 (+) NCBI T2T-CHM13v2.0
Tnfaip1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 78,413,676 - 78,427,122 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 78,413,676 - 78,427,158 (-) Ensembl GRCm39 Ensembl GRCm38 11 78,522,850 - 78,536,270 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 78,522,850 - 78,536,332 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 78,336,352 - 78,349,762 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 78,339,043 - 78,352,389 (-) NCBI MGSCv36 mm8 Celera 11 88,154,923 - 88,168,333 (-) NCBI Celera Cytogenetic Map 11 B5 NCBI cM Map 11 46.74 NCBI
Tnfaip1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 63,915,824 - 63,930,514 (-) NCBI GRCr8 mRatBN7.2 10 63,417,774 - 63,432,466 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 63,417,775 - 63,432,466 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 68,050,427 - 68,065,093 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 67,555,758 - 67,570,424 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 63,025,275 - 63,039,976 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 65,791,002 - 65,805,693 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 65,791,003 - 65,805,693 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 65,837,922 - 65,853,370 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 64,632,189 - 64,646,879 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 10 64,647,455 - 64,660,389 (-) NCBI Celera 10 62,394,329 - 62,409,019 (-) NCBI Celera Cytogenetic Map 10 q25 NCBI
Tnfaip1 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955481 4,786,015 - 4,799,274 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955481 4,786,015 - 4,799,376 (-) NCBI ChiLan1.0 ChiLan1.0
TNFAIP1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 36,111,643 - 36,122,935 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 37,992,035 - 38,003,328 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 28,427,448 - 28,438,826 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 28,929,788 - 28,941,278 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 28,929,788 - 28,941,278 (-) Ensembl panpan1.1 panPan2
Tnfaip1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 41,613,977 - 41,625,942 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936538 4,491,925 - 4,503,645 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936538 4,491,915 - 4,503,887 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
TNFAIP1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 44,616,916 - 44,629,934 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 44,616,840 - 44,626,330 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 46,529,322 - 46,538,741 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
TNFAIP1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 16 22,102,499 - 22,111,739 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 16 22,102,531 - 22,115,451 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666075 8,014,614 - 8,026,413 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Tnfaip1 (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
6
5
5
23
22
16
6
6
6
6
33
22
12
14
10
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00000029628 ⟹ ENSCAFP00000027535
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 9 42,588,112 - 42,595,596 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845012326 ⟹ ENSCAFP00845009635
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 9 43,407,185 - 43,417,107 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845012374 ⟹ ENSCAFP00845009674
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 9 43,407,185 - 43,415,074 (+) Ensembl
RefSeq Acc Id:
XM_038486388 ⟹ XP_038342316
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 9 42,191,412 - 42,201,351 (+) NCBI
RefSeq Acc Id:
XM_038548226 ⟹ XP_038404154
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 9 42,559,687 - 42,569,626 (+) NCBI
RefSeq Acc Id:
XM_038612191 ⟹ XP_038468119
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 9 42,482,639 - 42,492,584 (+) NCBI
RefSeq Acc Id:
XM_038677449 ⟹ XP_038533377
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 9 43,407,163 - 43,417,110 (+) NCBI
RefSeq Acc Id:
XM_548281 ⟹ XP_548281
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 9 42,588,009 - 42,597,961 (+) NCBI Dog10K_Boxer_Tasha 9 41,744,941 - 41,754,881 (+) NCBI
Sequence:
GGGCGGGGCTGGGCCGCGGCTCAGGGCGGAGTCCGCGGGCGGAGGATGTGAGCTCACGGCCCGGGATTGCTGGCGGGCAGGCGGCCACAGCCCCGGGCGGCACGGGGTCGGCTTGCAACCCAGCTGAG AGGAGACGTGCCCCCCGGGAACGTGCTGAGAGTATGAGGCTCTGGCCTCCGCTGGCCACTTACTCGTGATCCTTCCACCACGGCGGAGCCTTCCAAGCCAACCTCCTGCCGTGTGGTGATCTACCTGC AGCGGGAGATGTCAGGAGATACCTGTCTGTGCCCAGCCTCAGGAGCCAAGCCCAAGCTGAGCGGCTTCAAGGGAGGAGGCTTGGGCAACAAATATGTCCAGCTCAATGTGGGGGGCTCACTGTACTAC ACCACCGTGCGGGCCCTAACCCGGCATGACACCATGCTCAAGGCCATGTTCAGCGGGCGCATGGAGGTGCTGACTGACAAAGAAGGTTGGATCCTCATAGACCGATGTGGAAAGCACTTCGGCACCAT TCTGAATTACCTCCGAGATGACACCATCATCCTCCCACAAAACCGGCAAGAAATCAAGGAACTGATGGCTGAAGCAAAGTATTACCTCATTCAGGGGCTGGTGAACATGTGCCAGACTGCTCTGCAGG ACAAGAAGGACTCCTACCAGCCTGTGTGCAACATCCCCATCATCACGTCCCTGAAAGAGGAAGAGAGGCTCATCGAATCCTCCACCAAGCCCGTGGTGAAGCTGCTGTACAATAGAAGCAACAACAAA TATTCTTATACCAGCAACTCCGACGACCACTTGCTGAAAAACATCGAGCTGTTTGACAAGCTCTCCCTGCGCTTCAACGGCCGCGTGCTCTTCATCAAGGACGTCATTGGCGATGAGATCTGCTGCTG GTCCTTCTACGGCCAGGGTCGCAAGCTGGCAGAGGTGTGCTGCACCTCCATTGTGTATGCCACGGAGAAGAAGCAGACCAAGGTGGAATTCCCAGAGGCCCGAATCTATGAGGAGACACTCAACGTCC TACTGTATGAGACCCCCCGAGTCCCTGACAACTCCTTATTGGAGGCCACAAGCCGAAGCCGCAGCCAGGCTTCTCCCAGTGAAGATGAGGAGACCTTTGAACTGCGGGACCGGGTCCGCCGTATCCAT GTCAAGCGCTATAGCACTTATGATGACCGGCAGCTTGGCCACCAGTCTACCCATCGCGACTGACAAGACCCTCAGGGAGTCAGGACACCCTGTCTCCCCTCCTATGGAACCCCGCCCCATTGGCCACC CCCCACGCTGGCGCTGGCTGGGTTTCTGCTCCAGCACCCAGAGGCATGACAGGAAGGCAAAGGGCCCGGCCCAAGCAGGAGAGGGACCAAATTCATTTGCCCTGCTCCCTGAGCACTTCACGATGACC ATATCCTGGACCCTTTGCTCACCTTTCCTGACAGGGAGCTGCTTCTGCCCCTGGGGCAAATGGACTGACCTGCCCACCACCTATGAGAACAATCTTCTCAACTCTTTGCTGAGTGTCCTTTTGCTCCA CTGAAGGGCTGCCTTGAGGCCTCTGAGGAACAGGCTCGTTCTGGTGCTGTGGAGGCCCAGTTTCTTACAGAAGGTGGGGCTCCTTTTTCCCTGACGTGTTTAAGCACAGGCTTCATGATTTTGGTTTT TAAAAAATTATCTAGGAAATGAATAGTTTTAGGTCTAACAATGAGGGGACTGGGTATATGTGCTACCCCTCTAGGGGTAGGTCCCCTCTTGGCCTTTCTTGATGCCTTTGGGGTCGGTTTCTTTAAAG CACTTTGTACTTTTATTCAGGAGATTTGTATTCTGCCCTGATCCCCATCATCTTTTTCTGACTCTAACCCCTCTTCCCTGCAGAATCAGTCTGAGAGGGGCTAGAGAAGCAATAAAACAAAGAACTAG CTTTGGCTTTGCTGAGCTGGCCAGGCAGCTGTTTCAGATAGCACACGGGAAGGAAGGGCATTTACGCTGGGAACTGTGGTCCTAGTAATGCTCACGAGAAAGAACACTTTAAGGTCATATAACTGACT CCTAGCGCCTTACATGATTGCTAGGTTCTCTTGCCCTCAGCTCCAAGGCATGCTTTGCTTTACTTACTAGAAAGCCAAAGAGCCATAATGGGGCCAGGAGCATGAGGCCCAGAAGGCAAGCTGTGGAG CCTGTGGGTACTGCGCTCGATGCCCATCAGCCGAGGATGGGGAACCCAAGCTCTGCATTCCCAGCAGCCCTGTGCAGAAGTGGCATGTGCTTGGCCATTGGCTAGTTACCTCCTGCCCGCCCCGTACT ATTGGTTTTGTGTCCTGGCTGGGATGGTGGTTCTGCCCAGCCTTGGGTCTGAACGCAGGGTGATGTGAGCAGCCTAAGTCCTTTGAAAGGCTGGGTCATGTGGCCACGGAGCTGCTGAGCCCCAACTC TTGGGCAAAGGAGCAAGTTCCTCCTTGGGGCTTTTTTTCCACTATCTTCTGTTTGGCTTGGCCCTTACCTGAATTATTTTCCAAAGGAATGCCATCAGGGAGAGAGCTGCTCAGCCAGCCTAGCAAGA CCCCATAGCCACTGAGTGGTAGCCACTGGGCAGGAGCACAGGTTATCAGGGCCCTCTCCTGACTATGGTCACTGTAGCTAAGTGGCCTGCTTGTGGCTGACCCACTGGAGCCTCTGGGCAAATGCCAG GCCATGGTTCAGACACCCACAAGGACCTGAAATGACATCATGGGGCAAGGGAACCGTGACTAACCTGGCATTTTATGCTCATCACAGCCTTGAATATGTAGACTTTCAGGTGAGGCACCCTGCTCATC AGCTCCAAACACTTCTTCCAGCCCTCACTGGAGTAACAAGATGAAGACAAATCCATTTCTTTGGCCAGATTCCGACTTTGGCTTTGTGGCTTTCCCACAGAGACTGGAATGCTCCTGGCCCAGGCTGA GGGTCTATTTCCTCAGCCCTGGCTCTCTAGCCCTCCGGCCCTCCCTCCTGAGGCCTGCTAATACTCAAAGCCTTGGCTCCCCACTGAGGTATTTTAATGCTTGTCCTTTGACCTCCCCTGCCCTGCAG CCTCTTTGCAGCTTTGACATTTAGATCCTCAGCTGTCTCAGTGGTGATTAGTCTTTCTTCCTGAGAAAGCACAGTAATCCTGGACTGATCAAAGTATCTCCCTGGTCTTAAGAAAAATACTAACATTG CAACCACTGAAGTAATCTTAACTTCTTTACTCAGACTTTGTGGCATATGGGTTTGGGGAATTTTCTTTGTGCCTCTCAGCCCCATTCGGAAAGCAGCTCTTGGCTGTGTGAATTTTTCAATTCGGAGC CCCTGGGGGGTGGGGGGGAGCAAACAAAAAGTGTGGATGAAGGTCAAACTTTGTCGGTTTCTGAGAAAACTAGAAGCCCGCTGTTCATCACATGGGTTTTATTCTTATCTCACCCACGTCTGCCTAAA GGATGGCCCAACTCCTGCCACCGAGAGAACTGCTTTGCCACTTAACTGCAATCCTTTGTTGCTCACCACAGGTGATGGAAACAAACACTAATTTCTAATAAAATTGTGTTACATTGCGGTAGTA
hide sequence
RefSeq Acc Id:
XP_548281 ⟸ XM_548281
- UniProtKB:
A0A8C0T9F1 (UniProtKB/TrEMBL), A0A8C0KHF8 (UniProtKB/TrEMBL), A0A8I3NFW8 (UniProtKB/TrEMBL), A0A8C0KFZ5 (UniProtKB/TrEMBL)
- Sequence:
MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTIILPQNRQEIKELMAEAKYYLIQGLVNMCQTALQDKK DSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTSIVYATEKKQTKVEFPEARIYEETLNVLLY ETPRVPDNSLLEATSRSRSQASPSEDEETFELRDRVRRIHVKRYSTYDDRQLGHQSTHRD
hide sequence
Ensembl Acc Id:
ENSCAFP00000027535 ⟸ ENSCAFT00000029628
RefSeq Acc Id:
XP_038342316 ⟸ XM_038486388
RefSeq Acc Id:
XP_038468119 ⟸ XM_038612191
Ensembl Acc Id:
ENSCAFP00845009635 ⟸ ENSCAFT00845012326
Ensembl Acc Id:
ENSCAFP00845009674 ⟸ ENSCAFT00845012374