TLR1 (toll like receptor 1) - Rat Genome Database

Name: TLR1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: TLR1 (toll like receptor 1) Pan paniscus

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Symbol:

TLR1

Name:

toll like receptor 1

RGD ID:

11864861

Description:

ENCODES a protein that exhibits lipopeptide binding (ortholog); INVOLVED IN cellular response to triacyl bacterial lipopeptide (ortholog); defense response (ortholog); detection of triacyl bacterial lipopeptide (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH aspergillosis (ortholog); asthma (ortholog); Brain Injuries (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred); membrane raft (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC103783955; toll-like receptor 1; uncharacterized LOC103783955

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TLR1 (toll like receptor 1)	NCBI	Ortholog
Mus musculus (house mouse):	Tlr1 (toll-like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tlr1 (toll-like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tlr1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TLR1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tlr1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TLR1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TLR1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tlr1 (toll like receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	33,119,485 - 33,133,541 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	38,973,623 - 38,981,413 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	38,979,006 - 38,981,366 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aspergillosis (ISO)

asthma (ISO)

Brain Injuries (ISO)

Hyperglycinemia, Lactic Acidosis, and Seizures (ISO)

IgA glomerulonephritis (ISO)

leprosy (ISO)

membranoproliferative glomerulonephritis (ISO)

perinatal necrotizing enterocolitis (ISO)

pulmonary tuberculosis (ISO)

pyelonephritis (ISO)

rheumatoid arthritis (ISO)

Spinal Cord Injuries (ISO)

tuberculosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to triacyl bacterial lipopeptide (IEA,ISO)

defense response (ISO)

detection of triacyl bacterial lipopeptide (IEA,ISO)

immune response (IEA)

inflammatory response (IEA)

innate immune response (IEA)

microglial cell activation (ISO)

positive regulation of interleukin-6 production (ISO)

positive regulation of interleukin-8 production (IEA)

positive regulation of toll-like receptor 2 signaling pathway (IEA)

positive regulation of tumor necrosis factor production (ISO)

response to bacterial lipoprotein (ISO)

toll-like receptor signaling pathway (IEA,ISO)

Cellular Component

Golgi apparatus (IEA)

membrane (IEA)

membrane raft (IEA)

plasma membrane (IEA)

receptor complex (IEA)

Toll-like receptor 1-Toll-like receptor 2 protein complex (IEA)

Molecular Function

identical protein binding (IEA)

lipopeptide binding (IEA,ISO)

protein binding (ISO)

signaling receptor activity (IEA)

Toll-like receptor 2 binding (IEA)

transmembrane signaling receptor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Toll-like receptor signaling pathway (ISO)

References

Additional References at PubMed

PMID:18810425	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TLR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	33,119,485 - 33,133,541 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	38,973,623 - 38,981,413 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	38,979,006 - 38,981,366 (-)	Ensembl	panpan1.1		panPan2

TLR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	38,787,569 - 38,805,644 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	38,787,555 - 38,856,817 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	38,797,876 - 38,806,412 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	38,474,271 - 38,482,807 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	38,620,443 - 38,628,978	NCBI
Cytogenetic Map	4	p14	NCBI
HuRef	4	38,122,243 - 38,130,779 (-)	NCBI		HuRef
CHM1_1	4	38,797,457 - 38,805,993 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	38,758,769 - 38,775,212 (-)	NCBI		T2T-CHM13v2.0

Tlr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	65,082,023 - 65,090,945 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	65,082,022 - 65,090,906 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	64,924,680 - 64,933,600 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	64,924,679 - 64,933,563 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	65,316,073 - 65,323,938 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	65,203,969 - 65,211,834 (-)	NCBI		MGSCv36	mm8
Celera	5	62,197,667 - 62,205,494 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	33.53	NCBI

Tlr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	43,737,761 - 43,750,389 (+)	NCBI		GRCr8
mRatBN7.2	14	43,384,127 - 43,396,765 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	43,384,932 - 43,397,125 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	43,753,982 - 43,756,546 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	45,053,936 - 45,056,500 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	43,534,102 - 43,536,666 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	45,062,662 - 45,065,014 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	45,062,662 - 45,081,991 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	44,871,931 - 44,874,283 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	46,114,913 - 46,124,820 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	42,538,240 - 42,540,804 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Tlr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	8,447,956 - 8,450,382 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	8,442,419 - 8,450,318 (+)	NCBI	ChiLan1.0	ChiLan1.0

TLR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	73,504,359 - 73,544,822 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	73,539,715 - 73,544,624 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	76,089,340 - 76,091,709 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	74,285,167 - 74,325,228 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	74,315,975 - 74,325,027 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	73,588,991 - 73,591,359 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	73,735,203 - 73,737,572 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	74,115,278 - 74,117,647 (+)	NCBI		UU_Cfam_GSD_1.0

Tlr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	39,707,097 - 39,715,850 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	6,582,584 - 6,584,971 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	6,582,430 - 6,591,128 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TLR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	30,147,624 - 30,155,466 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	30,147,600 - 30,155,454 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	31,627,675 - 31,660,825 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TLR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	11,482,307 - 11,490,847 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	11,488,294 - 11,490,654 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	57,897,098 - 57,911,767 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tlr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624840	7,287,781 - 7,290,162 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624840	7,287,772 - 7,349,282 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001279215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055111063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063603473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063603474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063603475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004670919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004670920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB445619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000020149 ⟹ ENSPPAP00000004374

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	38,979,006 - 38,981,366 (-)	Ensembl

RefSeq Acc Id:

NM_001279215 ⟹ NP_001266144

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,903 - 38,987,263 (-)	NCBI
NHGRI_mPanPan1	4	39,177,418 - 39,179,778 (-)	NCBI
Mhudiblu_PPA_v0	4	33,124,838 - 33,127,198 (-)	NCBI
PanPan1.1	4	38,979,006 - 38,981,366 (-)	NCBI

Sequence:

show sequence

ATGCCTAGCATCTTCCATTTTGCCATTATCTTCATGTTAATACTTCAGATCAGAATACAATTAT
CTGAAGAAAGTGAATTTTTAGTTGATAGGTCAAAAAACGGTCTCATCCACGTTCCTAAAGACCT
GTCCCAGAAAACAACAATCTTAAATATATCACAAAATTATATATCTGAGCTTTGGACTTCTGAC
ATCTTATCACTGTCAAAACTGAGGATTTTGATAATTTCTCATAATAGAATCCAGTATCTTGATA
TCAGTGTTTTCAAATTCAACCACGAATTGGAATACTTGGATTTGTCCCACAACAAGTTGGTGAA
GATTTCTTGCCACCCTACTGTGAACCTCAAGCACTTGGACCTGTCATTTAATGCATTTGATGCC
CTGCCTATATGCAAAGAGTTTGGCAATATGTCTCAACTAAAATTTCTGGGGTTGAGCACCACAC
ACTTAGAAAAATCTAGTGTGCTGCCAATTGCTCATTTGAATATCAGCAAGGTCTTGCTGGTCTT
AGGAGAGACTTATGGGGAAAAAGAAGACCCTGAGGGCCTTCAAGACTTTAACACTGAGAGTCTG
CACATTGTGTTCCCCACAAACAAAGAATTCCATTTTATTTTGGATGTGTCAGTCAAGACTGTAG
CAAATCTGGAACTATCTAATATCAAATGTGTGCTAGAAGATAACAAATGTTCTTACTTCCTAAG
TATTCTGGCGAAACTTCAAACAAATCCAAAGTTATCAAGTCTTACCTTAAACAACATTGAAACA
ACTTGGAATTCTTTCATTAGGATCCTCCAGCTGGTTTGGCATACAACCGTATGGTATTTCTCAA
TTTCAAACGTGAAGCTACAGGGTCAGCTGGACTTCAGAGATTTTGATTATTCTGGCACTTCCTT
GAAGGCCTTGTCTATACACCAAGTTGTCAGCGATGTGTTCAGTTTTCCGCAAAGTGATATCTAT
GAAATCTTTTCGAATATGAACATCAAAAATTTCACAGTGTCTGGTACACGCATGGTCCACATGC
TTTGCCCATCCAAAATTAGCCCGTTCCTGCATTTGGATTTTTCCAATAATCTCTTAACAGACAC
GGTTTTTGAAAATTGTGGGCACCTTACTGAGTTGGAGACACTTATTTTACAAATGAATCAATTA
AAAGAACTTTCAAAAATAGCTGAAATGACTACACAGATGAAGTCTCTGCAACGATTGGATATTA
GCCAGAATTCGGTAAGCTATGATGAAAAGAAAGGAGACTGTTCTTGGACTAAAAGTTTATTAAG
TTTAAATTTGTCTTCAAATATACTTACTGACACTATTTTCAGATGTTTACCTCCCAGGATCAAG
GTACTTGATCTTCACAGCAATAAAATAAAGAGCGTTCCTAAACAAGTCGTAAAACTGGAAGCTT
TGCAAGAACTCAATGTTGCTTTCAATTCTTTAACTGACCTTCCTGGATGTGGCAGCTTTAGCAG
CCTTTCTGTATTGATCATTGATCACAATTCAGTTTCCCACCCATCGGCTGATTTCTTCCAGAGC
TGCCAGAAGATGAGGTCAATAAAAGCAGGGGACAATCCATTCCAATGTACCTGTGAGCTAAGAG
AATTTGTCAAAAATATAGACCAAGTATCAAGTGAAGTGTTAGAGGGCTGGCCTGATTCTTATAA
GTGTGACTACCCAGAAAGTTATAGAGGAAGCCCACTAAAGGACTTTCACATGTCTGAATTATCC
TGCAACATAACTCTGCTGATCGTCACCATCGTTGCCACCATGCTGGTGTTGGCTGTGACTGTGA
CCTCCCTCTGCATCTACTTGGATCTGCCCTGGTATCTCAGGATGGTGTGCCAGTGGACCCAGAC
CCGGCGCAGGGCCAGGAACATACCCTTAGAAGAACTCCAAAGAAATCTCCAGTTTCATGCATTT
ATTTCATATAGTGGGCACGATTCTTTCTGGGTGAAGAATGAATTATTACCAAACCTAGAGAAAG
AAGGTATGCAGATTTGCCTTCATGAGAGAAACTTTGTTCCTGGCAAGAGCATTGTGGAAAATAT
CATCACCTGCATTGAGAAGAGTTACAAGTCCATCTTTGTTTTGTCTCCCAACTTTGTCCAGAGT
GAATGGTGCCATTATGAACTCTACTTTGCCCATCACAATCTCTTTCATGAAGGATCTAATAACT
TAATCCTGATCTTGCTGGAACCCATTCCACAGTACTCCATTCCTAGCAGTTATCACAAGCTCAA
AAGTCTCATGGCCAGGAGGACTTATTTGGAATGGCCCAAGGAAAAGAGCAAACGTGGCCTTTTT
TGGGCTAACTTAAGGGCAGCCATTAATATTAAGCTGACAGAGCAAGCAAAGAAATAG

hide sequence

RefSeq Acc Id:

XM_034958058 ⟹ XP_034813949

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI
Mhudiblu_PPA_v0	4	33,124,465 - 33,133,541 (-)	NCBI

RefSeq Acc Id:

XM_055111055 ⟹ XP_054967030

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_055111057 ⟹ XP_054967032

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_055111058 ⟹ XP_054967033

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_055111059 ⟹ XP_054967034

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_055111060 ⟹ XP_054967035

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_055111061 ⟹ XP_054967036

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 38,994,009 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,186,449 (-)	NCBI

RefSeq Acc Id:

XM_055111063 ⟹ XP_054967038

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI
NHGRI_mPanPan1	4	39,177,045 - 39,226,757 (-)	NCBI

RefSeq Acc Id:

XM_063603473 ⟹ XP_063459543

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 38,994,009 (-)	NCBI

RefSeq Acc Id:

XM_063603474 ⟹ XP_063459544

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 39,034,230 (-)	NCBI

RefSeq Acc Id:

XM_063603475 ⟹ XP_063459545

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	38,984,530 - 38,993,201 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001266144	(Get FASTA)	NCBI Sequence Viewer
	XP_034813949	(Get FASTA)	NCBI Sequence Viewer
	XP_054967030	(Get FASTA)	NCBI Sequence Viewer
	XP_054967032	(Get FASTA)	NCBI Sequence Viewer
	XP_054967033	(Get FASTA)	NCBI Sequence Viewer
	XP_054967034	(Get FASTA)	NCBI Sequence Viewer
	XP_054967035	(Get FASTA)	NCBI Sequence Viewer
	XP_054967036	(Get FASTA)	NCBI Sequence Viewer
	XP_054967038	(Get FASTA)	NCBI Sequence Viewer
	XP_063459543	(Get FASTA)	NCBI Sequence Viewer
	XP_063459544	(Get FASTA)	NCBI Sequence Viewer
	XP_063459545	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAG55016	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000004374
	ENSPPAP00000004374.1

RefSeq Acc Id:	NP_001266144 ⟸ NM_001279215
- Peptide Label:	precursor
- UniProtKB:	B3Y607 (UniProtKB/TrEMBL), A0A2R8ZHB2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSIFHFAIIFMLILQIRIQLSEESEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSD ILSLSKLRILIISHNRIQYLDISVFKFNHELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDA LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSSLTLNNIET TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFSFPQSDIY EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL KELSKIAEMTTQMKSLQRLDISQNSVSYDEKKGDCSWTKSLLSLNLSSNILTDTIFRCLPPRIK VLDLHSNKIKSVPKQVVKLEALQELNVAFNSLTDLPGCGSFSSLSVLIIDHNSVSHPSADFFQS CQKMRSIKAGDNPFQCTCELREFVKNIDQVSSEVLEGWPDSYKCDYPESYRGSPLKDFHMSELS CNITLLIVTIVATMLVLAVTVTSLCIYLDLPWYLRMVCQWTQTRRRARNIPLEELQRNLQFHAF ISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS EWCHYELYFAHHNLFHEGSNNLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLF WANLRAAINIKLTEQAKK hide sequence

RefSeq Acc Id:	XP_034813949 ⟸ XM_034958058
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSPPAP00000004374 ⟸ ENSPPAT00000020149

RefSeq Acc Id:	XP_054967038 ⟸ XM_055111063
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967034 ⟸ XM_055111059
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967032 ⟸ XM_055111057
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967030 ⟸ XM_055111055
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967035 ⟸ XM_055111060
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967033 ⟸ XM_055111058
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054967036 ⟸ XM_055111061
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063459544 ⟸ XM_063603474
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063459543 ⟸ XM_063603473
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063459545 ⟸ XM_063603475
- Peptide Label:	isoform X1

Protein Domains

TIR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000018402	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000020149	ENTREZGENE
	ENSPPAT00000020149.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10140	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	TIR_dom	UniProtKB/TrEMBL
	Toll-like_receptor	UniProtKB/TrEMBL
	Toll_tir_struct_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100968591	UniProtKB/TrEMBL
NCBI Gene	TLR1	ENTREZGENE
PANTHER	PTHR24365	UniProtKB/TrEMBL
	PTHR24365:SF261	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
PIRSF	Toll-like_receptor	UniProtKB/TrEMBL
PRINTS	INTRLKN1R1F	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
SMART	LRR_BAC	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF52200	UniProtKB/TrEMBL
UniProt	A0A2R8ZHB2	ENTREZGENE, UniProtKB/TrEMBL
	B3Y607	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-06-11	TLR1	toll like receptor 1	LOC103783955	uncharacterized LOC103783955	Data merged from RGD:11831318	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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