CLDN3 (claudin 3) - Rat Genome Database
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Gene: CLDN3 (claudin 3) Pan paniscus
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Symbol: CLDN3
Name: claudin 3
RGD ID: 11841711
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN actin cytoskeleton reorganization (ortholog); bicellular tight junction assembly (ortholog); calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Intestinal Reperfusion Injury (ortholog); FOUND IN apical junction complex (ortholog); apicolateral plasma membrane (ortholog); bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-3
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1780,924,338 - 80,925,761 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,924,731 - 80,925,393 (-)Ensemblpanpan1.1panPan2


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLDN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1780,924,338 - 80,925,761 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,924,731 - 80,925,393 (-)Ensemblpanpan1.1panPan2
CLDN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl773,768,997 - 73,770,270 (-)EnsemblGRCh38hg38GRCh38
GRCh38773,768,997 - 73,770,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37773,183,327 - 73,184,600 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,821,263 - 72,822,512 (-)NCBINCBI36hg18NCBI36
Build 34772,627,978 - 72,629,227NCBI
Celera768,661,514 - 68,662,787 (-)NCBI
Cytogenetic Map7q11.23NCBI
HuRef769,065,982 - 69,067,255 (-)NCBIHuRef
CHM1_1773,329,029 - 73,330,302 (-)NCBICHM1_1
CRA_TCAGchr7v2772,516,399 - 72,517,672 (-)NCBI
Cldn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,015,068 - 135,016,330 (+)NCBIGRCm39mm39
GRCm39 Ensembl5135,015,068 - 135,016,326 (+)Ensembl
GRCm385134,986,214 - 134,987,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5134,986,214 - 134,987,472 (+)EnsemblGRCm38mm10GRCm38
MGSCv375135,462,084 - 135,463,342 (+)NCBIGRCm37mm9NCBIm37
MGSCv365135,270,841 - 135,272,099 (+)NCBImm8
Celera5131,997,044 - 131,998,302 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map574.93NCBI
Cldn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21221,708,538 - 21,710,010 (-)NCBI
Rnor_6.0 Ensembl1221,831,342 - 21,832,813 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01221,831,341 - 21,832,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01223,849,259 - 23,850,731 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1223,471,431 - 23,472,903 (-)NCBICelera
Cytogenetic Map12q12NCBI
CLDN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,534,229 - 6,535,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365432,952,054 - 2,953,313 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl311,019,295 - 11,019,960 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1311,019,073 - 11,020,102 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,715,404 - 10,716,250 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,301,312 - 9,303,496 (+)NCBI
ChlSab1.1 Ensembl289,302,446 - 9,303,108 (+)Ensembl
Cldn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474014,065,172 - 14,066,432 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003815566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000011329   ⟹   ENSPPAP00000002314
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl780,924,731 - 80,925,393 (-)Ensembl
RefSeq Acc Id: XM_003815566   ⟹   XP_003815614
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1780,924,338 - 80,925,761 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003815614 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003815614   ⟸   XM_003815566
- Sequence:
RefSeq Acc Id: ENSPPAP00000002314   ⟸   ENSPPAT00000011329


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000010463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000002314 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000011329 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin3 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report pps:100975200 UniProtKB/TrEMBL
NCBI Gene CLDN3 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN3 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R8ZHZ2_PANPA UniProtKB/TrEMBL