CTDP1 (CTD phosphatase subunit 1) - Rat Genome Database

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Gene: CTDP1 (CTD phosphatase subunit 1) Pan paniscus
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Symbol: CTDP1
Name: CTD phosphatase subunit 1
RGD ID: 11828754
Description: ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (inferred); histone H2AXS140 phosphatase activity (inferred); hydrolase activity (inferred); INVOLVED IN negative regulation of cell growth involved in cardiac muscle cell development (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Burn-McKeown syndrome (ortholog); Charcot-Marie-Tooth disease (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN centrosome (inferred); intracellular membrane-bounded organelle (inferred); midbody (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA polymerase II subunit A C-terminal domain phosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21797,299,366 - 97,377,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11882,991,978 - 83,070,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11876,646,641 - 76,720,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1876,646,641 - 76,722,573 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CTDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21797,299,366 - 97,377,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11882,991,978 - 83,070,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11876,646,641 - 76,720,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1876,646,641 - 76,722,573 (+)Ensemblpanpan1.1panPan2
CTDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381879,676,768 - 79,756,625 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1879,679,803 - 79,754,503 (+)EnsemblGRCh38hg38GRCh38
GRCh371877,439,803 - 77,516,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361875,540,789 - 75,615,495 (+)NCBINCBI36Build 36hg18NCBI36
Build 341875,540,852 - 75,615,495NCBI
Celera1874,215,047 - 74,287,164 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1874,064,930 - 74,138,466 (+)NCBIHuRef
CHM1_11877,434,835 - 77,507,005 (+)NCBICHM1_1
T2T-CHM13v2.01879,950,566 - 80,031,824 (+)NCBIT2T-CHM13v2.0
Ctdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,451,174 - 80,522,959 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)EnsemblGRCm39 Ensembl
GRCm381880,407,959 - 80,478,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,604,698 - 80,666,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,570,018 - 80,631,726 (-)NCBIMGSCv36mm8
Celera1881,529,536 - 81,591,205 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.48NCBI
Ctdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81876,129,243 - 76,193,404 (-)NCBIGRCr8
mRatBN7.21873,854,277 - 73,916,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,956,857 - 76,017,952 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,626,207 - 76,687,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,471,831 - 74,532,918 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Ctdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,817,974 - 62,914,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540262,817,822 - 62,914,250 (+)NCBIChiLan1.0ChiLan1.0
CTDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11886,973 - 945,994 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,020 - 946,142 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,890,781 - 1,949,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01686,920 - 745,968 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1563,434 - 745,698 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11745,299 - 798,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01685,224 - 744,377 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,454 - 915,492 (-)NCBIUU_Cfam_GSD_1.0
Ctdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616369,893 - 407,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,769,771 - 145,811,678 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,769,763 - 145,811,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,558,184 - 311,582,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118479,476 - 549,546 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18478,543 - 544,258 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606025,723,426 - 25,796,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624806621,804 - 719,942 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624806621,087 - 720,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000061608   ⟹   ENSPPAP00000038702
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1876,646,641 - 76,720,928 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000061623   ⟹   ENSPPAP00000038717
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1876,646,778 - 76,720,208 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000061629   ⟹   ENSPPAP00000038723
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1876,660,930 - 76,722,573 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000061639   ⟹   ENSPPAP00000038732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1876,660,930 - 76,722,573 (+)Ensembl
RefSeq Acc Id: XM_003805202   ⟹   XP_003805250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21797,299,366 - 97,377,470 (+)NCBI
NHGRI_mPanPan11882,991,981 - 83,070,099 (+)NCBI
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBI
PanPan1.11876,646,641 - 76,720,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034943410   ⟹   XP_034799301
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21797,299,506 - 97,377,470 (+)NCBI
NHGRI_mPanPan11882,991,980 - 83,070,099 (+)NCBI
Mhudiblu_PPA_v01873,279,510 - 73,357,715 (+)NCBI
RefSeq Acc Id: XM_055102372   ⟹   XP_054958347
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21797,299,506 - 97,359,107 (+)NCBI
NHGRI_mPanPan11882,991,978 - 83,051,729 (+)NCBI
RefSeq Acc Id: XM_063597388   ⟹   XP_063453458
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21797,299,506 - 97,359,131 (+)NCBI
RefSeq Acc Id: XP_003805250   ⟸   XM_003805202
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CKP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034799301   ⟸   XM_034943410
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CKP5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000038717   ⟸   ENSPPAT00000061623
Ensembl Acc Id: ENSPPAP00000038702   ⟸   ENSPPAT00000061608
Ensembl Acc Id: ENSPPAP00000038732   ⟸   ENSPPAT00000061639
Ensembl Acc Id: ENSPPAP00000038723   ⟸   ENSPPAT00000061629
RefSeq Acc Id: XP_054958347   ⟸   XM_055102372
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063453458   ⟸   XM_063597388
- Peptide Label: isoform X4
Protein Domains
BRCT   FCP1 homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061608.1 UniProtKB/TrEMBL
  ENSPPAT00000061623.1 UniProtKB/TrEMBL
  ENSPPAT00000061629.1 UniProtKB/TrEMBL
  ENSPPAT00000061639.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/TrEMBL
  Fcp1 UniProtKB/TrEMBL
  FCP1_C UniProtKB/TrEMBL
  FCP1_dom UniProtKB/TrEMBL
  FCP1_euk UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
NCBI Gene CTDP1 ENTREZGENE
PANTHER PTHR23081 UniProtKB/TrEMBL
  RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE UniProtKB/TrEMBL
Pfam BRCT UniProtKB/TrEMBL
  FCP1_C UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
PROSITE BRCT UniProtKB/TrEMBL
  FCP1 UniProtKB/TrEMBL
SMART BRCT UniProtKB/TrEMBL
  CPDc UniProtKB/TrEMBL
Superfamily-SCOP SSF52113 UniProtKB/TrEMBL
  SSF56784 UniProtKB/TrEMBL
UniProt A0A2R9CKN1_PANPA UniProtKB/TrEMBL
  A0A2R9CKP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CKQ8_PANPA UniProtKB/TrEMBL