Ctdp1 (CTD phosphatase subunit 1) - Rat Genome Database

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Gene: Ctdp1 (CTD phosphatase subunit 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ctdp1
Name: CTD phosphatase subunit 1
RGD ID: 12738025
Description: ENCODES a protein that exhibits RNA polymerase II CTD heptapeptide repeat phosphatase activity (ortholog); Tat protein binding (ortholog); TFIIF-class transcription factor complex binding (ortholog); INVOLVED IN exit from mitosis (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); positive regulation by host of viral transcription (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Burn-McKeown syndrome (ortholog); Charcot-Marie-Tooth disease (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN centrosome (ortholog); intracellular membrane-bounded organelle (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CTD phosphatase subunit 1, transcript variant X1; CTD phosphatase subunit 1, transcript variant X2; RNA polymerase II subunit A C-terminal domain phosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBI
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ctdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBI
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1879,679,803 - 79,754,503 (+)EnsemblGRCh38hg38GRCh38
GRCh381879,679,803 - 79,756,625 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371877,439,803 - 77,516,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361875,540,789 - 75,615,495 (+)NCBINCBI36hg18NCBI36
Build 341875,540,852 - 75,615,495NCBI
Celera1874,215,047 - 74,287,164 (+)NCBI
Cytogenetic Map18q23NCBI
HuRef1874,064,930 - 74,138,466 (+)NCBIHuRef
CHM1_11877,434,835 - 77,507,005 (+)NCBICHM1_1
Ctdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,451,174 - 80,522,959 (-)NCBIGRCm39mm39
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)Ensembl
GRCm381880,407,959 - 80,478,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,604,698 - 80,666,406 (-)NCBIGRCm37mm9NCBIm37
MGSCv361880,570,018 - 80,631,726 (-)NCBImm8
Celera1881,529,536 - 81,591,205 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.48NCBI
Ctdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21873,854,277 - 73,916,232 (-)NCBI
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Ctdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,817,974 - 62,914,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540262,817,822 - 62,914,250 (+)NCBIChiLan1.0ChiLan1.0
CTDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11876,646,641 - 76,720,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1876,646,641 - 76,722,573 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBIMhudiblu_PPA_v0panPan3
CTDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11886,973 - 945,994 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,020 - 946,142 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,890,781 - 1,949,811 (-)NCBI
ROS_Cfam_1.01686,920 - 745,968 (-)NCBI
UMICH_Zoey_3.11745,299 - 798,384 (-)NCBI
UNSW_CanFamBas_1.01685,224 - 744,377 (-)NCBI
UU_Cfam_GSD_1.01856,454 - 915,492 (-)NCBI
CTDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,769,768 - 145,811,678 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,769,763 - 145,811,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,558,184 - 311,582,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118479,476 - 549,546 (-)NCBI
ChlSab1.1 Ensembl18478,543 - 544,258 (-)Ensembl
Vero_WHO_p1.0NW_02366606025,723,426 - 25,796,410 (+)NCBI
Ctdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624806621,087 - 720,044 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005334369   ⟹   XP_005334426
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBI
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732509   ⟹   XP_021588184
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494415,048,180 - 15,076,821 (-)NCBI
SpeTri2.0NW_004936616369,306 - 407,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040271762   ⟹   XP_040127696
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494415,048,180 - 15,076,821 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005334426 (Get FASTA)   NCBI Sequence Viewer  
  XP_021588184 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127696 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3293683 (Get FASTA)   NCBI Sequence Viewer  
  KAG3293684 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005334426   ⟸   XM_005334369
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021588184   ⟸   XM_021732509
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040127696   ⟸   XM_040271762
- Peptide Label: isoform X1
Protein Domains
BRCT   FCP1 homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011752 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010549 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011759 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/TrEMBL
  Fcp1 UniProtKB/TrEMBL
  FCP1_C UniProtKB/TrEMBL
  FCP1_dom UniProtKB/TrEMBL
  FCP1_euk UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
NCBI Gene Ctdp1 ENTREZGENE
PANTHER PTHR23081 UniProtKB/TrEMBL
Pfam FCP1_C UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
PROSITE BRCT UniProtKB/TrEMBL
  FCP1 UniProtKB/TrEMBL
SMART BRCT UniProtKB/TrEMBL
  CPDc UniProtKB/TrEMBL
Superfamily-SCOP SSF52113 UniProtKB/TrEMBL
  SSF56784 UniProtKB/TrEMBL
TIGRFAMs FCP1_euk UniProtKB/TrEMBL
UniProt I3MHY0_ICTTR UniProtKB/TrEMBL