B4GALT4 (beta-1,4-galactosyltransferase 4) - Rat Genome Database

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Gene: B4GALT4 (beta-1,4-galactosyltransferase 4) Pan paniscus
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Symbol: B4GALT4
Name: beta-1,4-galactosyltransferase 4
RGD ID: 11800113
Description: ENCODES a protein that exhibits galactosyltransferase activity (inferred); glycosyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN carbohydrate metabolic process (inferred); glycosylation (inferred); keratan sulfate biosynthetic process (inferred); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,183,675 - 117,212,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,188,713 - 117,206,828 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,329,595 - 116,358,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,241,676 - 123,270,831 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,241,676 - 123,270,806 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B4GALT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,183,675 - 117,212,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,188,713 - 117,206,828 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,329,595 - 116,358,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,241,676 - 123,270,831 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,241,676 - 123,270,806 (-)Ensemblpanpan1.1panPan2
B4GALT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,211,742 - 119,240,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,211,732 - 119,240,946 (-)EnsemblGRCh38hg38GRCh38
GRCh373118,930,589 - 118,959,725 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,413,279 - 120,442,442 (-)NCBINCBI36Build 36hg18NCBI36
Celera3117,339,081 - 117,368,232 (-)NCBICelera
Cytogenetic Map3q13.32NCBI
HuRef3116,306,059 - 116,335,214 (-)NCBIHuRef
CHM1_13118,894,016 - 118,923,181 (-)NCBICHM1_1
T2T-CHM13v2.03121,931,449 - 121,960,629 (-)NCBIT2T-CHM13v2.0
B4galt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,562,600 - 38,589,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,562,626 - 38,589,411 (+)EnsemblGRCm39 Ensembl
GRCm381638,742,220 - 38,769,054 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,742,264 - 38,769,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv371638,742,377 - 38,769,158 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,661,614 - 38,688,176 (+)NCBIMGSCv36mm8
Celera1639,147,148 - 39,174,186 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.87NCBI
B4galt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,501,358 - 75,527,291 (-)NCBIGRCr8
mRatBN7.21161,995,807 - 62,021,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,995,814 - 62,021,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1170,808,370 - 70,834,190 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,470,630 - 63,496,445 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,521,805 - 62,547,637 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,558,006 - 64,584,054 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,557,977 - 64,583,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,525,192 - 67,550,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,772,138 - 63,797,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,829,730 - 63,855,506 (-)NCBI
Celera1161,498,650 - 61,524,529 (-)NCBICelera
Cytogenetic Map11q21NCBI
B4galt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542718,963,396 - 18,985,479 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542718,964,578 - 18,982,090 (-)NCBIChiLan1.0ChiLan1.0
B4GALT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13322,903,842 - 22,920,955 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3322,904,149 - 22,920,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3322,935,572 - 22,963,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,141,256 - 23,169,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3323,140,761 - 23,169,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13322,944,497 - 22,972,114 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03322,982,171 - 23,009,839 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,549,708 - 23,577,503 (-)NCBIUU_Cfam_GSD_1.0
B4galt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,280,283 - 131,329,566 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365366,215,152 - 6,241,877 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365366,215,221 - 6,241,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,969,602 - 141,003,929 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,969,561 - 141,003,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,277,223 - 150,279,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,600,143 - 61,629,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,604,044 - 61,630,420 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041104,706,030 - 104,735,691 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,939,838 - 28,971,652 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,929,599 - 28,972,417 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000044897   ⟹   ENSPPAP00000022090
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3123,241,676 - 123,270,806 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000044906   ⟹   ENSPPAP00000022099
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3123,242,106 - 123,259,869 (-)Ensembl
RefSeq Acc Id: XM_003825139   ⟹   XP_003825187
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,856 (-)NCBI
NHGRI_mPanPan13117,188,713 - 117,206,828 (-)NCBI
Mhudiblu_PPA_v03116,329,595 - 116,358,779 (-)NCBI
PanPan1.13123,241,676 - 123,270,831 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063602894   ⟹   XP_063458964
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,566 (-)NCBI
RefSeq Acc Id: XM_063602895   ⟹   XP_063458965
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,852 (-)NCBI
RefSeq Acc Id: XM_063602896   ⟹   XP_063458966
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,554 (-)NCBI
RefSeq Acc Id: XM_063602897   ⟹   XP_063458967
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,852 (-)NCBI
RefSeq Acc Id: XM_063602898   ⟹   XP_063458968
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,852 (-)NCBI
RefSeq Acc Id: XM_063602899   ⟹   XP_063458969
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,183,675 - 117,212,852 (-)NCBI
RefSeq Acc Id: XM_063602900   ⟹   XP_063458970
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,184,625 - 117,212,852 (-)NCBI
RefSeq Acc Id: XM_063602901   ⟹   XP_063458971
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22117,184,625 - 117,212,852 (-)NCBI
RefSeq Acc Id: XP_003825187   ⟸   XM_003825139
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000022090   ⟸   ENSPPAT00000044897
Ensembl Acc Id: ENSPPAP00000022099   ⟸   ENSPPAT00000044906
RefSeq Acc Id: XP_063458965   ⟸   XM_063602895
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458967   ⟸   XM_063602897
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458969   ⟸   XM_063602899
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458968   ⟸   XM_063602898
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458964   ⟸   XM_063602894
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458966   ⟸   XM_063602896
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458970   ⟸   XM_063602900
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063458971   ⟸   XM_063602901
- Peptide Label: isoform X2

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034244 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044897.1 UniProtKB/TrEMBL
  ENSPPAT00000044906.1 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report pps:100994562 UniProtKB/TrEMBL
NCBI Gene B4GALT4 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 4 UniProtKB/TrEMBL
  PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A2R9AXR1_PANPA UniProtKB/TrEMBL
  A0A2R9AXY0 ENTREZGENE, UniProtKB/TrEMBL