B4galt4 (beta-1,4-galactosyltransferase 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: B4galt4 (beta-1,4-galactosyltransferase 4) Ictidomys tridecemlineatus
Analyze
Symbol: B4galt4
Name: beta-1,4-galactosyltransferase 4
RGD ID: 12440646
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); N-acetyllactosamine synthase activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); keratan sulfate biosynthetic process (inferred); lactosylceramide biosynthetic process (inferred); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,4-galactosyltransferase 4, transcript variant X1; beta-1,4-galactosyltransferase 4, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,280,283 - 131,329,566 (+)NCBI
SpeTri2.0NW_0049365366,215,221 - 6,241,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B4galt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,280,283 - 131,329,566 (+)NCBI
SpeTri2.0NW_0049365366,215,221 - 6,241,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,211,742 - 119,240,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3119,211,732 - 119,240,946 (-)EnsemblGRCh38hg38GRCh38
GRCh373118,930,589 - 118,959,725 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,413,279 - 120,442,442 (-)NCBINCBI36hg18NCBI36
Celera3117,339,081 - 117,368,232 (-)NCBI
Cytogenetic Map3q13.32NCBI
HuRef3116,306,059 - 116,335,214 (-)NCBIHuRef
CHM1_13118,894,016 - 118,923,181 (-)NCBICHM1_1
T2T-CHM13v2.03121,931,449 - 121,960,587 (-)NCBI
B4galt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,562,600 - 38,589,416 (+)NCBIGRCm39mm39
GRCm39 Ensembl1638,562,626 - 38,589,411 (+)Ensembl
GRCm381638,742,220 - 38,769,054 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,742,264 - 38,769,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv371638,742,377 - 38,769,158 (+)NCBIGRCm37mm9NCBIm37
MGSCv361638,661,614 - 38,688,176 (+)NCBImm8
Celera1639,147,148 - 39,174,186 (+)NCBICelera
Cytogenetic Map16B4NCBI
B4galt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21161,995,807 - 62,021,751 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1161,995,814 - 62,021,671 (-)Ensembl
Rnor_6.01164,558,006 - 64,584,054 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,557,977 - 64,583,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,525,192 - 67,550,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,772,138 - 63,797,917 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11163,829,730 - 63,855,506 (-)NCBI
Celera1161,498,650 - 61,524,529 (-)NCBICelera
Cytogenetic Map11q21NCBI
B4galt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542718,963,396 - 18,985,479 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542718,964,578 - 18,982,090 (-)NCBIChiLan1.0ChiLan1.0
B4GALT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13123,241,676 - 123,270,831 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,241,676 - 123,270,806 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03116,329,595 - 116,358,779 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13322,903,842 - 22,920,955 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3322,904,149 - 22,920,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3322,935,572 - 22,963,143 (-)NCBI
ROS_Cfam_1.03323,141,256 - 23,169,319 (-)NCBI
ROS_Cfam_1.0 Ensembl3323,140,761 - 23,169,352 (-)Ensembl
UMICH_Zoey_3.13322,944,497 - 22,972,114 (-)NCBI
UNSW_CanFamBas_1.03322,982,171 - 23,009,839 (-)NCBI
UU_Cfam_GSD_1.03323,549,708 - 23,577,503 (-)NCBI
B4GALT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,969,602 - 141,003,929 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,969,561 - 141,003,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,277,223 - 150,279,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,600,143 - 61,629,857 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,604,044 - 61,630,420 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041104,706,030 - 104,735,691 (-)NCBIVero_WHO_p1.0
B4galt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,939,838 - 28,971,652 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473128,929,599 - 28,972,417 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005327617   ⟹   XP_005327674
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602131,280,283 - 131,306,755 (+)NCBI
SpeTri2.0NW_0049365366,215,221 - 6,241,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359688   ⟹   XP_013215142
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602131,280,283 - 131,303,274 (+)NCBI
SpeTri2.0NW_0049365366,218,702 - 6,241,828 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005726909
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602131,280,283 - 131,329,566 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005327674 (Get FASTA)   NCBI Sequence Viewer  
  XP_013215142 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271412 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271413 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005327674   ⟸   XM_005327617
- Peptide Label: isoform X1
- UniProtKB: I3MX39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215142   ⟸   XM_013359688
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027381 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000016684 ENTREZGENE
  ENSSTOP00000016684.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024803.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt4 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MX39 ENTREZGENE, UniProtKB/TrEMBL