B4GALT4 (beta-1,4-galactosyltransferase 4)

Gene: B4GALT4 (beta-1,4-galactosyltransferase 4) Sus scrofa

Analyze

Symbol:

B4GALT4

Name:

beta-1,4-galactosyltransferase 4

RGD ID:

14059152

Description:

ENCODES an ncrna that exhibits galactosyltransferase activity (inferred); glycosyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN carbohydrate metabolic process (inferred); glycosylation (inferred); keratan sulfate biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)

Type:

ncrna (Ensembl: protein-coding)

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	140,969,602 - 141,003,929 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	140,969,561 - 141,003,936 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	150,277,223 - 150,279,556 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

glycosylation (IBA,IEA)

keratan sulfate biosynthetic process (IEA)

lactosylceramide biosynthetic process (IEA)

protein glycosylation (IEA)

Cellular Component

Golgi apparatus (IBA,IEA)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

galactosyltransferase activity (IBA,IEA)

glycosyltransferase activity (IEA)

metal ion binding (IEA)

N-acetyllactosamine synthase activity (IEA)

protein binding (ISO)

UDP-galactosyltransferase activity (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:16130451

Genomics

Comparative Map Data

B4GALT4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	140,969,602 - 141,003,929 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	140,969,561 - 141,003,936 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	150,277,223 - 150,279,556 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GALT4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	119,211,742 - 119,240,878 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	119,211,732 - 119,240,946 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	118,930,589 - 118,959,725 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	120,413,279 - 120,442,442 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	117,339,081 - 117,368,232 (-)	NCBI		Celera
Cytogenetic Map	3	q13.32	NCBI
HuRef	3	116,306,059 - 116,335,214 (-)	NCBI		HuRef
CHM1_1	3	118,894,016 - 118,923,181 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	121,931,449 - 121,960,629 (-)	NCBI		T2T-CHM13v2.0

B4galt4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	38,562,600 - 38,589,416 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	38,562,626 - 38,589,411 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	38,742,220 - 38,769,054 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	38,742,264 - 38,769,049 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	38,742,377 - 38,769,158 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	38,661,614 - 38,688,176 (+)	NCBI		MGSCv36	mm8
Celera	16	39,147,148 - 39,174,186 (+)	NCBI		Celera
Cytogenetic Map	16	B4	NCBI
cM Map	16	26.87	NCBI

B4galt4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	75,501,358 - 75,527,291 (-)	NCBI		GRCr8
mRatBN7.2	11	61,995,807 - 62,021,751 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	61,995,814 - 62,021,671 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	70,808,370 - 70,834,190 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	63,470,630 - 63,496,445 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	62,521,805 - 62,547,637 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	64,558,006 - 64,584,054 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	64,557,977 - 64,583,994 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	67,525,192 - 67,550,871 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	63,772,138 - 63,797,917 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	63,829,730 - 63,855,506 (-)	NCBI
Celera	11	61,498,650 - 61,524,529 (-)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

B4galt4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	18,963,396 - 18,985,479 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	18,964,578 - 18,982,090 (-)	NCBI	ChiLan1.0	ChiLan1.0

B4GALT4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	117,183,675 - 117,212,856 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	117,188,713 - 117,206,828 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	116,329,595 - 116,358,779 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	123,241,676 - 123,270,831 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	123,241,676 - 123,270,806 (-)	Ensembl	panpan1.1		panPan2

B4GALT4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	22,903,842 - 22,920,955 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	22,904,149 - 22,920,956 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	22,935,572 - 22,963,143 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	23,141,256 - 23,169,319 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	23,140,761 - 23,169,352 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	22,944,497 - 22,972,114 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	22,982,171 - 23,009,839 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	23,549,708 - 23,577,503 (-)	NCBI		UU_Cfam_GSD_1.0

B4galt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	131,280,283 - 131,329,566 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936536	6,215,152 - 6,241,877 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936536	6,215,221 - 6,241,828 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GALT4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	61,600,143 - 61,629,857 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	61,604,044 - 61,630,420 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	104,706,030 - 104,735,691 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4galt4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	28,939,838 - 28,971,652 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	28,929,599 - 28,972,417 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in B4GALT4
821 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	4		2	1		7		2
Low	6	4	1	4	2	16	2	1	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001300547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK347809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY253339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01065176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000013026 ⟹ ENSSSCP00000012684

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	140,969,602 - 141,003,929 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000089486 ⟹ ENSSSCP00000070571

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	140,969,602 - 141,003,929 (+)	Ensembl

RefSeq Acc Id:

XR_001300547

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	140,969,561 - 141,003,936 (+)	NCBI

Sequence:

show sequence

AGCCCGCAGGAGCCGCCTCCCGGGAGGCGGGGCGGTCCCGGCTGCTGCAGCTTTTGCCTCCTCC
CCTGGCTCCGGGTGGTGCTCTTCGCGGCCGCGTCAGGGAGACTGCTGGAGCAGAACTATCAAGC
AAGAGCAGGCTTTGCACTGTCATTTGTCATCAGGTTTGCAACCAGACTGGAAAAGCTGAATTTG
AAGCTTCCTGCCTGCAGTGAGGCCAAGAGACACCTATTGCTCACAAAATAAGACATGAGCTTCA
ACGTGACTTTTCACCTTTCCTACAGATTCCGATTACTGCTGCTTTTTACCTTATGCCTGACAGT
GGTTGGGTGGGCCACCAGTAACTACTTTGTGGGTGCCATTCAAGACATTCCTAAAGCAAAGGAG
CTCATGGCTAATTTCAACAAGGGTATAGTTTGGGGGAAGAAAGGAACTGTGACAGATGAAGCAT
CTGTGAAAAAAGCAGACCTTGACAACTGCCCTTCTGTGTCTCCATACCTCAAAGGCCAGACCAA
GCTTGTTTTCAAACCAGATCTCACTCTGGAAGAAGTACGGGCAGAAAACCCCAAAGTGCACAGA
GGCCGGTATCACCCGGAGGAATGCAGGGCTGTGCAGCGGGTGGCCATCCTGATTCCTCACCGGC
ACAGAGAGAAGCACCTACTGTACCTGCTGGAACACCTTCACCCCTTCCTGCAGAGGCAGCAGCT
GGACTATGGCATCTACATCATCCACCAGGCTGGAAATAAAAAGTTTAATCGCGCCAAACTCCTG
AATGTGGGCTATCTAGAAGCTCTTAAGGATGAAAACTGGGACTGCTTTATATTCCATGATGTGG
ACCTGGTGCCTGAGAATGACTGGAACATTTACAGGTGTGAGGATCAGCCCAAGCATCTGGTGGT
TGGCAGGAACAGCACTGGGTACAGGTTACGGTACAGTGGATATTTTGGGGGTGTTACTGCCCTA
AGCCGAGAGCAATTTTTCAAGGTGAATGGATTCTCTAACAACTACTGGGGATGGGGAGGCGAAG
ACGATGACCTCAGACTCAGGGTTGAGCTTCATAGAATGAAAATAATCCGGCCACTACCTGAAGT
GGGTAAATATACTATGATCTTTCACAAGAGAGACCAAGGCAACGAGGTGAATATAGAACGGATG
AAGCTCTTACATCAAGTGTCACGTGTCTGGAGAACAGATGGGTTGACCAGTTGTGATTATAAAT
TACTCTCTGTGGATTACAATCCTTTATATATCAATATCACAGTGGATTTCTTGTCTAGTCCATG
ACTCTGGATCTTTTGGTGACATTTGGAGGAACTGAATATTTGATTGCAATAATTTTGACCTAGA
GATTCCCCTGGTAGCACACATTAAGAACTTGTTGCAGCCAATCATTGAGCTGAATTCTCCTTTT
TTGGTGTTTTCTTAGCAGAGCTCCTGGTGATGTGGAGTGTAAAACAATTGTAACAAGACAGCTT
TCTTAGTTGTTTTGATCATGAAGGTTAAATATTGTAATGTAGATACTTGAAGGACTAGGTGTCA
AAGGACTACACAAAAGATCTCATGAAGGCTACATACATATTTTCTGATATATTAAAAAGGCCAT
GGGAGGTAAGATTGCTAAATGTCCCGGAGAACCAGAATTATTCTCATCCAAGGGAGACAGAGAT
GAAGATGTGTTTCTCTTACTTATTTATCCTGTATGGCCATCTGTGAAGAGGTGGGTCCCCGGTG
AGAAGGCAGCCAAGGAAGAGGAGACAAAAGGTGAAGAATCAAGGTGCAGTGAACTTGGCACTGA
AGAGGTGGCAGAAGGACTGTGTCAGATGGAGAGCTGCTGTGGTGCTGCTGCTGCTGCGGCTGTG
CTGCTGCTGCGGCTGTCACTCTGCAGTGGTGTCACCTGCCCAGATGAGCCTTCTGGTAACAACC
TAGCAGAGAACACGTTACCTACTCATTTTTAGAGCATTTTTGTAAAATGATTTTGTACGTGTAG
GATATGAAATAGTTGTTTACAAATTACATATTAACAATAATACCTACAAAGTACCTCTGTAGTA
AAATATGAAAAAGC

hide sequence

Protein Sequences


GenBank Protein	AAO92024	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000012684.3
	ENSSSCP00005036393.1
	ENSSSCP00005036410.1

RefSeq Acc Id:

ENSSSCP00000070571 ⟸ ENSSSCT00000089486

RefSeq Acc Id:

ENSSSCP00000012684 ⟸ ENSSSCT00000013026

Protein Domains

Galactosyltransferase C-terminal Galactosyltransferase N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011903	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005036778	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000013026	ENTREZGENE
	ENSSSCT00000013026.3	UniProtKB/TrEMBL
	ENSSSCT00005058937.1	UniProtKB/TrEMBL
	ENSSSCT00005058962.1	UniProtKB/TrEMBL
InterPro	Galactosyl_T	UniProtKB/TrEMBL
	Galactosyl_T_C	UniProtKB/TrEMBL
	Galactosyl_T_N	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
NCBI Gene	B4GALT4	ENTREZGENE
PANTHER	BETA-1,4-GALACTOSYLTRANSFERASE 4	UniProtKB/TrEMBL
	PTHR19300	UniProtKB/TrEMBL
Pfam	Glyco_transf_7C	UniProtKB/TrEMBL
	Glyco_transf_7N	UniProtKB/TrEMBL
PRINTS	B14GALTRFASE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53448	UniProtKB/TrEMBL
UniProt	F1SPA3_PIG	UniProtKB/TrEMBL
	Q864U7_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A4X1T2P2	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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