GFER (growth factor, augmenter of liver regeneration) - Rat Genome Database

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Gene: GFER (growth factor, augmenter of liver regeneration) Pan paniscus
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Symbol: GFER
Name: growth factor, augmenter of liver regeneration
RGD ID: 11676943
Description: ENCODES a protein that exhibits flavin-dependent sulfhydryl oxidase activity (ortholog); INVOLVED IN cellular response to actinomycin D (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to toxic substance (ortholog); PARTICIPATES IN intermembrane space assembly pathway of mitochondrial protein import; mitochondrial iron-sulfur cluster export pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); Acute-On-Chronic Liver Failure (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAD-linked sulfhydryl oxidase ALR
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,359,690 - 2,363,217 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,141,337 - 6,144,864 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016716,640 - 720,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,073,064 - 2,076,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,073,064 - 2,076,592 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GFER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,359,690 - 2,363,217 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,141,337 - 6,144,864 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016716,640 - 720,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,073,064 - 2,076,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,073,064 - 2,076,592 (+)Ensemblpanpan1.1panPan2
GFER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,984,193 - 1,987,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,984,193 - 1,987,749 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,034,194 - 2,037,750 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,974,151 - 1,977,751 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,974,150 - 1,977,749NCBI
Celera162,246,329 - 2,249,928 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,958,203 - 1,961,803 (+)NCBIHuRef
CHM1_1162,034,076 - 2,037,676 (+)NCBICHM1_1
T2T-CHM13v2.0162,004,138 - 2,007,694 (+)NCBIT2T-CHM13v2.0
Gfer
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,912,164 - 24,915,065 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,912,161 - 24,915,503 (-)EnsemblGRCm39 Ensembl
GRCm381724,693,190 - 24,696,156 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,693,187 - 24,696,156 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,830,136 - 24,833,101 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,420,790 - 24,423,748 (-)NCBIMGSCv36mm8
Celera1725,216,107 - 25,219,071 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.48NCBI
Gfer
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,223,023 - 14,225,736 (-)NCBIGRCr8
mRatBN7.21013,718,489 - 13,721,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,718,489 - 13,720,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,465,172 - 18,467,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,954,025 - 17,956,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,453,227 - 13,455,583 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,059,347 - 14,061,703 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,059,347 - 14,061,703 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,876,328 - 13,878,685 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,946,311 - 13,948,665 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,946,310 - 13,948,665 (-)NCBI
Celera1013,398,231 - 13,400,587 (-)NCBICelera
Cytogenetic Map10q12NCBI
Gfer
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,281,419 - 15,283,266 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,280,753 - 15,283,405 (-)NCBIChiLan1.0ChiLan1.0
GFER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,948,927 - 38,951,300 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,949,484 - 38,951,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,188,617 - 40,190,946 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,265,945 - 39,268,274 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,266,502 - 39,268,893 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,942,725 - 38,945,054 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,915,028 - 38,917,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,393,915 - 39,396,244 (-)NCBIUU_Cfam_GSD_1.0
Gfer
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,655,651 - 104,658,098 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,051,325 - 2,053,818 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,051,362 - 2,053,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,981,940 - 39,984,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,981,938 - 39,984,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,197,274 - 42,199,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GFER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,880,025 - 1,886,829 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,879,968 - 1,883,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,184,259 - 29,187,914 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gfer
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913273,705 - 275,693 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913273,126 - 276,353 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003807689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000021072   ⟹   ENSPPAP00000004594
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,073,064 - 2,076,592 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000021093   ⟹   ENSPPAP00000004598
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,073,064 - 2,074,871 (+)Ensembl
RefSeq Acc Id: XM_003807689   ⟹   XP_003807737
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,359,690 - 2,363,217 (-)NCBI
NHGRI_mPanPan1166,141,337 - 6,144,864 (-)NCBI
Mhudiblu_PPA_v016716,640 - 720,196 (-)NCBI
PanPan1.1162,073,064 - 2,076,592 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004594
  ENSPPAP00000004594.1
  ENSPPAP00000004598.1
RefSeq Acc Id: XP_003807737   ⟸   XM_003807689
- UniProtKB: A0A2R8ZHZ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000004594   ⟸   ENSPPAT00000021072
Ensembl Acc Id: ENSPPAP00000004598   ⟸   ENSPPAT00000021093
Protein Domains
ERV/ALR sulfhydryl oxidase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000019230 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000021072.1 UniProtKB/TrEMBL
  ENSPPAT00000021093.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.310 UniProtKB/TrEMBL
InterPro ALR/ERV UniProtKB/TrEMBL
  ERV/ALR_sulphydryl_oxid_sf UniProtKB/TrEMBL
  ERV/ALR_sulphydryl_oxidase UniProtKB/TrEMBL
NCBI Gene GFER ENTREZGENE
PANTHER FAD-LINKED SULFHYDRYL OXIDASE ALR UniProtKB/TrEMBL
  PTHR12645 UniProtKB/TrEMBL
Pfam Evr1_Alr UniProtKB/TrEMBL
PROSITE ERV_ALR UniProtKB/TrEMBL
Superfamily-SCOP SSF69000 UniProtKB/TrEMBL
UniProt A0A2R8ZHZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZP76_PANPA UniProtKB/TrEMBL