TNFSF13 (TNF superfamily member 13)

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Gene: TNFSF13 (TNF superfamily member 13) Pan paniscus

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Symbol:

TNFSF13

Name:

TNF superfamily member 13

RGD ID:

11670022

Description:

ENCODES a protein that exhibits cytokine activity (inferred); receptor ligand activity (inferred); signaling receptor binding (inferred); INVOLVED IN germinal center formation (ortholog); immunoglobulin mediated immune response (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN external side of plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tumor necrosis factor ligand superfamily member 13; tumor necrosis factor superfamily member 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,152,955 - 15,156,623 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,527 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,576,518 - 7,579,834 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,576,465 - 7,579,834 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

B-Cell Chronic Lymphocytic Leukemia (ISO)

B-lymphoblastic leukemia/lymphoma (ISO)

Colorectal Neoplasms (ISO)

common variable immunodeficiency (ISO)

congenital myasthenic syndrome 2A (ISO)

dyskeratosis congenita (ISO)

IgA glomerulonephritis (ISO)

Li-Fraumeni syndrome (ISO)

Spontaneous Abortions (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell communication (IEA)

germinal center formation (ISO)

immune response (IEA)

immunoglobulin mediated immune response (ISO)

positive regulation of B cell proliferation (IEA)

positive regulation of cell population proliferation (ISO)

positive regulation of germinal center formation (ISO)

positive regulation of isotype switching to IgA isotypes (IEA,ISO)

regulation of immune response (ISO)

signal transduction (IEA)

signaling (IEA)

Cellular Component

cytoplasm (IEA)

external side of plasma membrane (ISO)

extracellular region (IEA)

extracellular space (IEA)

membrane (IEA)

Molecular Function

cytokine activity (IEA)

protein binding (ISO)

receptor ligand activity (IEA)

signaling receptor binding (IEA)

tumor necrosis factor receptor binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TNFSF13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	15,152,955 - 15,156,623 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,527 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	7,576,518 - 7,579,834 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,576,465 - 7,579,834 (+)	Ensembl	panpan1.1		panPan2

TNFSF13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	7,558,282 - 7,561,601 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	7,558,292 - 7,561,608 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	7,461,599 - 7,464,918 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	7,402,340 - 7,405,642 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	7,402,339 - 7,405,641	NCBI
Celera	17	7,487,932 - 7,491,248 (+)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	7,355,794 - 7,359,110 (+)	NCBI		HuRef
CHM1_1	17	7,470,571 - 7,473,887 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	7,462,543 - 7,465,862 (+)	NCBI		T2T-CHM13v2.0

Tnfsf13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,573,403 - 69,576,380 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	69,573,672 - 69,576,610 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	69,682,577 - 69,685,554 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,682,846 - 69,685,784 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,496,079 - 69,499,056 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	69,498,772 - 69,501,749 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	70,266,684 - 70,269,661 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B3	NCBI
cM Map	11	42.86	NCBI

Tnfsf13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	54,898,805 - 54,901,815 (-)	NCBI		GRCr8
mRatBN7.2	10	54,400,054 - 54,403,723 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	54,400,065 - 54,403,042 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	59,062,692 - 59,065,675 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	58,551,244 - 58,554,227 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	54,058,826 - 54,061,809 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	56,286,964 - 56,290,680 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	56,286,887 - 56,289,952 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	56,032,602 - 56,036,336 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	56,499,945 - 56,502,928 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	56,513,568 - 56,516,551 (-)	NCBI
Celera	10	53,554,575 - 53,557,558 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

TNFSF13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	32,482,723 - 32,484,790 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	32,482,723 - 32,484,789 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	32,622,581 - 32,624,648 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	32,588,213 - 32,590,280 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	32,587,985 - 32,590,279 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	32,555,887 - 32,557,954 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	32,512,340 - 32,514,407 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	32,691,425 - 32,693,492 (+)	NCBI		UU_Cfam_GSD_1.0

Tnfsf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	47,365,741 - 47,368,769 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	839,877 - 842,962 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	839,877 - 842,962 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNFSF13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	52,853,904 - 52,857,029 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	52,853,646 - 52,857,033 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103242307
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,935,073 - 6,938,792 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	6,926,584 - 6,938,019 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	14,469,608 - 14,473,058 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnfsf13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	10,175,859 - 10,179,233 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	10,175,534 - 10,179,233 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003810080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003810081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008962444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024926279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034941456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000028841 ⟹ ENSPPAP00000006949

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,576,465 - 7,579,834 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000028844 ⟹ ENSPPAP00000006951

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,576,465 - 7,579,827 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000028852 ⟹ ENSPPAP00000006955

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,577,266 - 7,579,059 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000028858 ⟹ ENSPPAP00000006958

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	7,577,266 - 7,579,059 (+)	Ensembl

RefSeq Acc Id:

XM_003810080 ⟹ XP_003810128

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,153,058 - 15,156,623 (+)	NCBI
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI
Mhudiblu_PPA_v0	17	7,590,672 - 7,593,520 (+)	NCBI
PanPan1.1	17	7,576,600 - 7,579,827 (+)	NCBI

Sequence:

show sequence

ATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTTCAGCACAGGGAGTAGTGC
AGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCAGCCAGTTTCTTGCTTCCG
TGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACCTTCAGTCACCCCTAGTGA
ACTGCCCCAGCGATCTCGGCTGTGCTTGACCCCGAGGGTCTTCCACCCTCGCCCTGACCCTGGA
CACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTCTAGCCAGCCAACCTTCCC
TCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTTCCTCCTGGGTGTCACTGG
CAGCCCTGTCCTTCCTACAGGGACTGGAACCTAATTCTCCTGAGGCTGAGGGAGGGTGGAGGGT
CTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACAGTACCCTTAGCTTGCTTT
CCTCCTCCCTCCTTTTTATTCTCAAGTTCCTTTTTATTTCTCCTTGCGTAACAACCTTCTTCCC
TTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGCTACCCCACTCTTGAAACC
ACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTTCTTGCTAGCCCCCAAAGG
GCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCAGTTGCCCTCTGGTTGAGT
TGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGACCCAACAAACAGAGCTGC
AGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGAGGACAGGAGGCCCCTCCCAGAATGGGGAAGG
GTATCCCTGGCAGAGTCTCCCGGAGCAGAGTTCCGATGCCCTGGAAGCCTGGGAGAATGGGGAG
AGATCCCGGAAAAGGAGAGCAGTGCTCACCCAAAAACAGAAGAAGCAGCACTCTGTCCTGCACC
TGGTTCCCATTAACGCCACCTCCAAGGATGACTCCGATGTGACAGAGGTGATGTGGCAACCAGC
TCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGAATCCAGGATGCTGGAGTT
TATCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCATGGGTCAGGTGGTGTCTC
GAGAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAGTATGCCCTCCCACCCGGA
CCGGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACACCAAGGGGATATTCTGAGT
GTCATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATGGAACCTTCCTGGGGTTTG
TGAAACTGTGATTGTGTTATAAAAAGTGGCTCCCAGCTTGGAAGACCAGGACTTTGATTTTACG
GATATCTTGCTTCTGTTCCCCATGGAGCTCCGAATTCTTGCGTGTGTGTAGATGAGGGGCGGGG
GACGGGCGCCAGGCATTGTCCAGACCTGGTCGGGGCCCACTGGAAGCATCCAGAACAGCACCAC
CATCTAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTGGCCGAAGTCCACGAAGCCGCCCTCTGC
TAGGGAAAACCCCTGGTTCTCCATGCCACACCTCTCTCCAGGTGCCCTCTGCCTCTTCACCCCA
CAAGAAGCCTTATCCTACGTCCTTCTCTCCATCTATCGGACCCCAGTTTCCATCACTATCTCCA
GAGATGTAGCTATTATGCGCCCGTCTACAGGGGGTGCCCGACGATGACGGTGCCTTCGCAGTCA
AATTACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCGCTCCATTGCCCCGGCGTGGCAGGCCAT
TCCAAGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAGCCTCGGATGTATCGTACGCCCTGGTGT
TGGTGTTGCCTCACTCCTCTGAGCTCTTCTTTCTGATCAAGCCCTGCTTAAAGTTAAATAAAAT
AGAATGAATGATA

hide sequence

RefSeq Acc Id:

XM_003810081 ⟹ XP_003810129

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,153,049 - 15,156,623 (+)	NCBI
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,520 (+)	NCBI
PanPan1.1	17	7,576,518 - 7,579,827 (+)	NCBI

Sequence:

show sequence

CCGGAACCCTGTGTGCTGGGGAGGAATCCTGCAGTGGCCGGGGGGCTTGAGGCCGCTGCTTTGT
CTCTTCGTCCAGAGCCTTATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTT
CAGCACAGGGAGTAGTGCAGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCA
GCCAGTTTCTTGCTTCCGTGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACC
TTCAGTCACCCCTAGTGAACTGCCCCAGCGATCTCGGCTGTGCTTGACCCCGAGGGTCTTCCAC
CCTCGCCCTGACCCTGGACACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTC
TAGCCAGCCAACCTTCCCTCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTT
CCTCCTGGGTGTCACTGGCAGCCCTGTCCTTCCTACAGGGACTGGAACCTAATTCTCCTGAGGC
TGAGGGAGGGTGGAGGGTCTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACA
GTACCCTTAGCTTGCTTTCCTCCTCCCTCCTTTTTATTCTCAAGTTCCTTTTTATTTCTCCTTG
CGTAACAACCTTCTTCCCTTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGC
TACCCCACTCTTGAAACCACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTT
CTTGCTAGCCCCCAAAGGGCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCA
GTTGCCCTCTGGTTGAGTTGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGA
CCCAACAAACAGAGCTGCAGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGAGGACAGGAGGCCC
CTCCCAGAATGGGGAAGGGTATCCCTGGCAGAGTCTCCCGGAGCAGAGTTCCGATGCCCTGGAA
GCCTGGGAGAATGGGGAGAGATCCCGGAAAAGGAGAGCAGTGCTCACCCAAAAACAGAAGAAGC
AGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACCTCCAAGGATGACTCCGATGTGACAGA
GGTGATGTGGCAACCAGCTCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGA
ATCCAGGATGCTGGAGTTTATCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCA
TGGGTCAGGTGGTGTCTCGAGAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAG
TATGCCCTCCCACCCGGACCGGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACAC
CAAGGGGATATTCTGAGTGTCATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATG
GAACCTTCCTGGGACTTTGATTTTACGGATATCTTGCTTCTGTTCCCCATGGAGCTCCGAATTC
TTGCGTGTGTGTAGATGAGGGGCGGGGGACGGGCGCCAGGCATTGTCCAGACCTGGTCGGGGCC
CACTGGAAGCATCCAGAACAGCACCACCATCTAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTG
GCCGAAGTCCACGAAGCCGCCCTCTGCTAGGGAAAACCCCTGGTTCTCCATGCCACACCTCTCT
CCAGGTGCCCTCTGCCTCTTCACCCCACAAGAAGCCTTATCCTACGTCCTTCTCTCCATCTATC
GGACCCCAGTTTCCATCACTATCTCCAGAGATGTAGCTATTATGCGCCCGTCTACAGGGGGTGC
CCGACGATGACGGTGCCTTCGCAGTCAAATTACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCG
CTCCATTGCCCCGGCGTGGCAGGCCATTCCAAGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAG
CCTCGGATGTATCGTACGCCCTGGTGTTGGTGTTGCCTCACTCCTCTGAGCTCTTCTTTCTGAT
CAAGCCCTGCTTAAAGTTAAATAAAATAGAATGAATGATA

hide sequence

RefSeq Acc Id:

XM_008962444 ⟹ XP_008960692

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,152,955 - 15,156,623 (+)	NCBI
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,527 (+)	NCBI
PanPan1.1	17	7,576,518 - 7,579,834 (+)	NCBI

Sequence:

show sequence

CCGGAACCCTGTGTGCTGGGGAGGAATCCTGCAGTGGCCGGGGGGCTTGAGGCCGCTGCTTTGT
CTCTTCGTCCAGAGCCTTATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTT
CAGCACAGGGAGTAGTGCAGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCA
GCCAGTTTCTTGCTTCCGTGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACC
TTCAGTCACCCCTAGTGAACTGCCCCAGCGATCTCGGCTGTGCTTGACCCCGAGGGTCTTCCAC
CCTCGCCCTGACCCTGGACACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTC
TAGCCAGCCAACCTTCCCTCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTT
CCTCCTGGGTGTCACTGGCAGCCCTGTCCTTCCTACAGGGACTGGAACCTAATTCTCCTGAGGC
TGAGGGAGGGTGGAGGGTCTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACA
GTACCCTTAGCTTGCTTTCCTCCTCCCTCCTTTTTATTCTCAAGTTCCTTTTTATTTCTCCTTG
CGTAACAACCTTCTTCCCTTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGC
TACCCCACTCTTGAAACCACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTT
CTTGCTAGCCCCCAAAGGGCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCA
GTTGCCCTCTGGTTGAGTTGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGA
CCCAACAAACAGAGCTGCAGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGAGGACAGGAGGCCC
CTCCCAGAATGGGGAAGGGTATCCCTGGCAGAGTCTCCCGGAGCAGAGTTCCGATGCCCTGGAA
GCCTGGGAGAATGGGGAGAGATCCCGGAAAAGGAGAGCAGTGCTCACCCAAAAACAGAAGAAGC
AGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACCTCCAAGGATGACTCCGATGTGACAGA
GGTGATGTGGCAACCAGCTCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGA
ATCCAGGATGCTGGAGTTTATCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCA
TGGGTCAGGTGGTGTCTCGAGAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAG
TATGCCCTCCCACCCGGACCGGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACAC
CAAGGGGATATTCTGAGTGTCATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATG
GAACCTTCCTGGGGTTTGTGAAACTGTGATTGTGTTATAAAAAGTGGCTCCCAGCTTGGAAGAC
CAGGGTGGGTACATACTGGAGACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAATGTGCAGGA
ACAGAGGCGTCTTCCTGGGTTTGGCTCCCCGTTCCTCACTTTTCCCTTTTCATTCCCACCCCCT
AGACTTTGATTTTACGGATATCTTGCTTCTGTTCCCCATGGAGCTCCGAATTCTTGCGTGTGTG
TAGATGAGGGGCGGGGGACGGGCGCCAGGCATTGTCCAGACCTGGTCGGGGCCCACTGGAAGCA
TCCAGAACAGCACCACCATCTAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTGGCCGAAGTCCA
CGAAGCCGCCCTCTGCTAGGGAAAACCCCTGGTTCTCCATGCCACACCTCTCTCCAGGTGCCCT
CTGCCTCTTCACCCCACAAGAAGCCTTATCCTACGTCCTTCTCTCCATCTATCGGACCCCAGTT
TCCATCACTATCTCCAGAGATGTAGCTATTATGCGCCCGTCTACAGGGGGTGCCCGACGATGAC
GGTGCCTTCGCAGTCAAATTACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCGCTCCATTGCCC
CGGCGTGGCAGGCCATTCCAAGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAGCCTCGGATGTA
TCGTACGCCCTGGTGTTGGTGTTGCCTCACTCCTCTGAGCTCTTCTTTCTGATCAAGCCCTGCT
TAAAGTTAAATAAAATAGAATGAATGATACCCCGGC

hide sequence

RefSeq Acc Id:

XM_024926279 ⟹ XP_024782047

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,153,045 - 15,156,623 (+)	NCBI
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,527 (+)	NCBI
PanPan1.1	17	7,576,518 - 7,579,834 (+)	NCBI

Sequence:

show sequence

CCGGAACCCTGTGTGCTGGGGAGGAATCCTGCAGTGGCCGGGGGGCTTGAGGCCGCTGCTTTGT
CTCTTCGTCCAGAGCCTTATGTAAGAGCTTTTCTCGGGAAACAGGAAGTCCTGCTTGCCAATTT
CAGCACAGGGAGTAGTGCAGGCCTTATTCCAACACACCCGGCCCAGCCTTAACCCCAGAACTCA
GCCAGTTTCTTGCTTCCGTGCCCCTGGTTCTCCTCCCCATCGAGCCCACCCCTCCTTTCCCACC
TTCAGTCACCCCTAGTGAACTGCCCCAGCGATCTCGGCTGTGCTTGACCCCGAGGGTCTTCCAC
CCTCGCCCTGACCCTGGACACTGCCCAGCTTGGCCCCCCATCCTGCTCCTGGCACAATGCCCTC
TAGCCAGCCAACCTTCCCTCCCCCAACCCTGGGGCCGCCCCAGGGTTCCTGCGCACTGCCTGTT
CCTCCTGGGTGTCACTGGCAGCCCTGTCCTTCCTACAGGGACTGGAACCTAATTCTCCTGAGGC
TGAGGGAGGGTGGAGGGTCTCAAGGCAACGCTGGCCCCACGACGGAGTGCCAGGAGCACTAACA
GTACCCTTAGCTTGCTTTCCTCCTCCCTCCTTTTTATTCTCAAGTTCCTTTTTATTTCTCCTTG
CGTAACAACCTTCTTCCCTTCTGCACCACTGCCCGTACCCTTACCCGCCCCGCCACCTCCTTGC
TACCCCACTCTTGAAACCACAGCTGTTGGCAGGGTCCCCAGCTCATGCCAGCCTCATCTCCTTT
CTTGCTAGCCCCCAAAGGGCCTCCAGGCAACATGGGGGGCCCAGTCAGAGAGCCGGCACTCTCA
GTTGCCCTCTGGTTGAGTTGGGGGGCAGCTCTGGGGGCCGTGGCTTGTGCCATGGCTCTGCTGA
CCCAACAAACAGAGCTGCAGAGCCTCAGGAGAGAGGTGAGCCGGCTGCAGAGGACAGGAGGCCC
CTCCCAGAATGGGGAAGGGTATCCCTGGCAGAGTCTCCCGGAGCAGCACTCTGTCCTGCACCTG
GTTCCCATTAACGCCACCTCCAAGGATGACTCCGATGTGACAGAGGTGATGTGGCAACCAGCTC
TTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGAATCCAGGATGCTGGAGTTTA
TCTGCTGTATAGCCAGGTCCTGTTTCAAGACGTGACTTTCACCATGGGTCAGGTGGTGTCTCGA
GAAGGCCAAGGAAGGCAGGAGACTCTATTCCGATGTATAAGAAGTATGCCCTCCCACCCGGACC
GGGCCTACAACAGCTGCTATAGCGCAGGTGTCTTCCATTTACACCAAGGGGATATTCTGAGTGT
CATAATTCCCCGGGCAAGGGCGAAACTTAACCTCTCTCCACATGGAACCTTCCTGGGGTTTGTG
AAACTGTGATTGTGTTATAAAAAGTGGCTCCCAGCTTGGAAGACCAGGGTGGGTACATACTGGA
GACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAATGTGCAGGAACAGAGGCGTCTTCCTGGGT
TTGGCTCCCCGTTCCTCACTTTTCCCTTTTCATTCCCACCCCCTAGACTTTGATTTTACGGATA
TCTTGCTTCTGTTCCCCATGGAGCTCCGAATTCTTGCGTGTGTGTAGATGAGGGGCGGGGGACG
GGCGCCAGGCATTGTCCAGACCTGGTCGGGGCCCACTGGAAGCATCCAGAACAGCACCACCATC
TAGCGGCCGCTCGAGGGAAGCACCCGCCGGTTGGCCGAAGTCCACGAAGCCGCCCTCTGCTAGG
GAAAACCCCTGGTTCTCCATGCCACACCTCTCTCCAGGTGCCCTCTGCCTCTTCACCCCACAAG
AAGCCTTATCCTACGTCCTTCTCTCCATCTATCGGACCCCAGTTTCCATCACTATCTCCAGAGA
TGTAGCTATTATGCGCCCGTCTACAGGGGGTGCCCGACGATGACGGTGCCTTCGCAGTCAAATT
ACTCTTCGGGTCCCAAGGTTTGGCTTTCACGCGCTCCATTGCCCCGGCGTGGCAGGCCATTCCA
AGCCCTTCCGGGCTGGAACTGGTGTCGGAGGAGCCTCGGATGTATCGTACGCCCTGGTGTTGGT
GTTGCCTCACTCCTCTGAGCTCTTCTTTCTGATCAAGCCCTGCTTAAAGTTAAATAAAATAGAA
TGAATGATACCCCGGC

hide sequence

RefSeq Acc Id:

XM_034941456 ⟹ XP_034797347

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	15,153,050 - 15,156,623 (+)	NCBI
NHGRI_mPanPan1	17	17,119,099 - 17,122,688 (+)	NCBI
Mhudiblu_PPA_v0	17	7,589,931 - 7,593,527 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003810128	(Get FASTA)	NCBI Sequence Viewer
	XP_003810129	(Get FASTA)	NCBI Sequence Viewer
	XP_008960692	(Get FASTA)	NCBI Sequence Viewer
	XP_024782047	(Get FASTA)	NCBI Sequence Viewer
	XP_034797347	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006949
	ENSPPAP00000006949.1
	ENSPPAP00000006951
	ENSPPAP00000006951.1
	ENSPPAP00000006955.1
	ENSPPAP00000006958
	ENSPPAP00000006958.1

RefSeq Acc Id:	XP_008960692 ⟸ XM_008962444
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZVN2 (UniProtKB/TrEMBL), A0A2R8ZSV5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSR LQRTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSK DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQET LFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL hide sequence

RefSeq Acc Id:	XP_003810128 ⟸ XM_003810080
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZVN2 (UniProtKB/TrEMBL), A0A2R8ZSV5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSR LQRTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSK DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQET LFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL hide sequence

RefSeq Acc Id:	XP_003810129 ⟸ XM_003810081
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZPT3 (UniProtKB/TrEMBL), A0A2R8ZSV5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSR LQRTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSK DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQET LFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGL hide sequence

RefSeq Acc Id:	XP_024782047 ⟸ XM_024926279
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R8ZSV5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVSR LQRTGGPSQNGEGYPWQSLPEQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVR IQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH QGDILSVIIPRARAKLNLSPHGTFLGFVKL hide sequence

RefSeq Acc Id:	XP_034797347 ⟸ XM_034941456
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZPT5 (UniProtKB/TrEMBL), A0A2R8ZSV5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000006955 ⟸ ENSPPAT00000028852

Ensembl Acc Id:

ENSPPAP00000006958 ⟸ ENSPPAT00000028858

Ensembl Acc Id:

ENSPPAP00000006949 ⟸ ENSPPAT00000028841

Ensembl Acc Id:

ENSPPAP00000006951 ⟸ ENSPPAT00000028844

Protein Domains

THD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000025960	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000028841.1	UniProtKB/TrEMBL
	ENSPPAT00000028844.1	UniProtKB/TrEMBL
	ENSPPAT00000028852.1	UniProtKB/TrEMBL
	ENSPPAT00000028858.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
InterPro	TNF_CS	UniProtKB/TrEMBL
	TNF_dom	UniProtKB/TrEMBL
	TNF_Ligand_Superfamily	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/TrEMBL
KEGG Report	pps:100978212	UniProtKB/TrEMBL
NCBI Gene	TNFSF13	ENTREZGENE
PANTHER	PROTEIN EIGER	UniProtKB/TrEMBL
	TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13	UniProtKB/TrEMBL
Pfam	TNF	UniProtKB/TrEMBL
PROSITE	TNF_1	UniProtKB/TrEMBL
	TNF_2	UniProtKB/TrEMBL
SMART	TNF	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/TrEMBL
UniProt	A0A2R8ZPT3	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZPT5	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZSV5	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZVN2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-08	TNFSF13	TNF superfamily member 13		tumor necrosis factor superfamily member 13	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD