Tnfsf13 (tumor necrosis factor (ligand) superfamily, member 13) - Rat Genome Database

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Gene: Tnfsf13 (tumor necrosis factor (ligand) superfamily, member 13) Mus musculus
Analyze
Symbol: Tnfsf13
Name: tumor necrosis factor (ligand) superfamily, member 13
RGD ID: 1314163
MGI Page MGI
Description: Predicted to enable receptor ligand activity. Acts upstream of or within immunoglobulin mediated immune response; positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains; and positive regulation of cell population proliferation. Located in external side of plasma membrane. Is expressed in future midbrain; nervous system; renal vasculature; retina outer nuclear layer; and spleen. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma. Orthologous to human TNFSF13 (TNF superfamily member 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310026N09Rik; a proliferation-inducing ligand; APRIL; MGC106105; TA; TALL2; Tnfsf12; Tnlg7b; TRD; TRDL1; tumor necrosis factor (ligand) superfamily, member 12; tumor necrosis factor ligand 7b; tumor necrosis factor ligand superfamily member 13
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,573,403 - 69,576,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,573,672 - 69,576,610 (-)EnsemblGRCm39 Ensembl
GRCm381169,682,577 - 69,685,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,682,846 - 69,685,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,496,079 - 69,499,056 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,498,772 - 69,501,749 (-)NCBIMGSCv36mm8
MGSCv361170,266,684 - 70,269,661 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
1,1-dichloroethene  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
cetrorelix  (ISO)
CGP 52608  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
D-glucose  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
diuron  (ISO)
endosulfan  (ISO)
folic acid  (EXP)
fucoxanthin  (EXP)
furan  (ISO)
furosemide  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glycidol  (ISO)
isoflurane  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (EXP,ISO)
methapyrilene  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
pentobarbital  (ISO)
phenformin  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
Soman  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
Tributyltin oxide  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. APRIL promotes B-1 cell-associated neoplasm. Planelles L, etal., Cancer Cell 2004 Oct;6(4):399-408.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. APRIL and TALL-I and receptors BCMA and TACI: system for regulating humoral immunity. Yu G, etal., Nat Immunol 2000 Sep;1(3):252-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11239407   PMID:12070306   PMID:12354377   PMID:12477932   PMID:14729948   PMID:14988498   PMID:15226823   PMID:15451660   PMID:15489334  
PMID:15846369   PMID:15851487   PMID:16141072   PMID:16141073   PMID:16293214   PMID:16914324   PMID:16919470   PMID:16931039   PMID:17947668   PMID:18180376   PMID:18287559   PMID:18322170  
PMID:18471884   PMID:18483203   PMID:18618015   PMID:19016524   PMID:19037968   PMID:19427796   PMID:21182087   PMID:21217761   PMID:21471524   PMID:21642598   PMID:21677750   PMID:21873635  
PMID:22127792   PMID:22355399   PMID:23178148   PMID:23178293   PMID:23620746   PMID:23797666   PMID:24100449   PMID:24444792   PMID:24512739   PMID:25496308   PMID:25631080   PMID:25753925  
PMID:25953898   PMID:26150532   PMID:26348210   PMID:26646413   PMID:27098833   PMID:27353252   PMID:27480124   PMID:28267197   PMID:28381397   PMID:28911883   PMID:30337376   PMID:30635946  
PMID:30819903   PMID:31152755   PMID:31258536   PMID:32075728   PMID:32755576   PMID:33567286   PMID:34006859   PMID:34433968   PMID:36808499   PMID:37027297   PMID:38469292   PMID:38691538  


Genomics

Comparative Map Data
Tnfsf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,573,403 - 69,576,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,573,672 - 69,576,610 (-)EnsemblGRCm39 Ensembl
GRCm381169,682,577 - 69,685,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,682,846 - 69,685,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,496,079 - 69,499,056 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,498,772 - 69,501,749 (-)NCBIMGSCv36mm8
MGSCv361170,266,684 - 70,269,661 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
TNFSF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,558,282 - 7,561,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,558,292 - 7,561,608 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,461,599 - 7,464,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,402,340 - 7,405,642 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,402,339 - 7,405,641NCBI
Celera177,487,932 - 7,491,248 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,355,794 - 7,359,110 (+)NCBIHuRef
CHM1_1177,470,571 - 7,473,887 (+)NCBICHM1_1
T2T-CHM13v2.0177,462,543 - 7,465,862 (+)NCBIT2T-CHM13v2.0
Tnfsf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,898,805 - 54,901,815 (-)NCBIGRCr8
mRatBN7.21054,400,054 - 54,403,723 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,400,065 - 54,403,042 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,062,692 - 59,065,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,551,244 - 58,554,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,058,826 - 54,061,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,286,964 - 56,290,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,286,887 - 56,289,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,032,602 - 56,036,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,499,945 - 56,502,928 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,513,568 - 56,516,551 (-)NCBI
Celera1053,554,575 - 53,557,558 (-)NCBICelera
Cytogenetic Map10q24NCBI
TNFSF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,152,955 - 15,156,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,119,099 - 17,122,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,589,931 - 7,593,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,576,518 - 7,579,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,576,465 - 7,579,834 (+)Ensemblpanpan1.1panPan2
TNFSF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,482,723 - 32,484,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,482,723 - 32,484,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,622,581 - 32,624,648 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,588,213 - 32,590,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,587,985 - 32,590,279 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,555,887 - 32,557,954 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,512,340 - 32,514,407 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,691,425 - 32,693,492 (+)NCBIUU_Cfam_GSD_1.0
Tnfsf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,365,741 - 47,368,769 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595839,877 - 842,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595839,877 - 842,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,853,904 - 52,857,029 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,853,646 - 52,857,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103242307
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,935,073 - 6,938,792 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,926,584 - 6,938,019 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,469,608 - 14,473,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfsf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,175,859 - 10,179,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,175,534 - 10,179,233 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnfsf13
114 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:190
Interacting mature miRNAs:229
Transcripts:ENSMUST00000018896, ENSMUST00000108648
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000018896   ⟹   ENSMUSP00000018896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,573,672 - 69,576,380 (-)Ensembl
GRCm38.p6 Ensembl1169,682,846 - 69,685,554 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108648   ⟹   ENSMUSP00000104288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,573,758 - 69,576,610 (-)Ensembl
GRCm38.p6 Ensembl1169,682,932 - 69,685,784 (-)Ensembl
RefSeq Acc Id: NM_001159505   ⟹   NP_001152977
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,573,403 - 69,576,380 (-)NCBI
GRCm381169,682,577 - 69,685,554 (-)ENTREZGENE
MGSCv371169,496,079 - 69,499,056 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023517   ⟹   NP_076006
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,573,403 - 69,576,380 (-)NCBI
GRCm381169,682,577 - 69,685,554 (-)ENTREZGENE
MGSCv371169,496,079 - 69,499,056 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_076006   ⟸   NM_023517
- Peptide Label: isoform 1
- UniProtKB: Q9ERP1 (UniProtKB/Swiss-Prot),   Q9D777 (UniProtKB/Swiss-Prot),   A0A0U5J5N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152977   ⟸   NM_001159505
- Peptide Label: isoform 2
- UniProtKB: Q5F2A4 (UniProtKB/TrEMBL),   A0A0U5J5N9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000104288   ⟸   ENSMUST00000108648
Ensembl Acc Id: ENSMUSP00000018896   ⟸   ENSMUST00000018896
Protein Domains
THD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D777-F1-model_v2 AlphaFold Q9D777 1-241 view protein structure

Promoters
RGD ID:6822354
Promoter ID:MM_KWN:8109
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:NM_001159505,   NM_023517,   OTTMUST00000013437
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,499,124 - 69,499,624 (-)MPROMDB
RGD ID:8675204
Promoter ID:EPDNEW_M15633
Type:initiation region
Name:Tnfsf13_2
Description:Mus musculus tumor necrosis factor superfamily, member 13 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15634  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,685,297 - 69,685,357EPDNEW
RGD ID:8675206
Promoter ID:EPDNEW_M15634
Type:initiation region
Name:Tnfsf13_1
Description:Mus musculus tumor necrosis factor superfamily, member 13 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15633  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,685,527 - 69,685,587EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916833 AgrOrtholog
Ensembl Genes ENSMUSG00000089669 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018896 ENTREZGENE
  ENSMUST00000018896.14 UniProtKB/TrEMBL
  ENSMUST00000108648.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TNF_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNF_Ligand_Superfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69583 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1916833 ENTREZGENE
NCBI Gene 69583 ENTREZGENE
PANTHER PROTEIN EIGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnfsf13 PhenoGen
PROSITE TNF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TNF UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U5J5N9 ENTREZGENE, UniProtKB/TrEMBL
  Q5F2A3_MOUSE UniProtKB/TrEMBL
  Q5F2A4 ENTREZGENE, UniProtKB/TrEMBL
  Q9D777 ENTREZGENE
  Q9ERP1 ENTREZGENE
  TNF13_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9ERP1 UniProtKB/Swiss-Prot