Tnfsf13 (TNF superfamily member 13) - Rat Genome Database

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Gene: Tnfsf13 (TNF superfamily member 13) Heterocephalus glaber
Analyze
Symbol: Tnfsf13
Name: TNF superfamily member 13
RGD ID: 18919432
Description: INVOLVED IN germinal center formation (ortholog); immunoglobulin mediated immune response (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor ligand superfamily member 13; tumor necrosis factor superfamily member 13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,175,859 - 10,179,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,175,534 - 10,179,233 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tnfsf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,175,859 - 10,179,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,175,534 - 10,179,233 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TNFSF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,558,282 - 7,561,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,558,292 - 7,561,608 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,461,599 - 7,464,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,402,340 - 7,405,642 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,402,339 - 7,405,641NCBI
Celera177,487,932 - 7,491,248 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,355,794 - 7,359,110 (+)NCBIHuRef
CHM1_1177,470,571 - 7,473,887 (+)NCBICHM1_1
T2T-CHM13v2.0177,462,543 - 7,465,862 (+)NCBIT2T-CHM13v2.0
Tnfsf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,573,403 - 69,576,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,573,672 - 69,576,610 (-)EnsemblGRCm39 Ensembl
GRCm381169,682,577 - 69,685,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,682,846 - 69,685,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,496,079 - 69,499,056 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,498,772 - 69,501,749 (-)NCBIMGSCv36mm8
MGSCv361170,266,684 - 70,269,661 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
Tnfsf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,898,805 - 54,901,815 (-)NCBIGRCr8
mRatBN7.21054,400,054 - 54,403,723 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,400,065 - 54,403,042 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,062,692 - 59,065,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,551,244 - 58,554,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,058,826 - 54,061,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,286,964 - 56,290,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,286,887 - 56,289,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,032,602 - 56,036,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,499,945 - 56,502,928 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,513,568 - 56,516,551 (-)NCBI
Celera1053,554,575 - 53,557,558 (-)NCBICelera
Cytogenetic Map10q24NCBI
TNFSF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,152,955 - 15,156,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,119,099 - 17,122,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,589,931 - 7,593,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,576,518 - 7,579,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,576,465 - 7,579,834 (+)Ensemblpanpan1.1panPan2
TNFSF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,482,723 - 32,484,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,482,723 - 32,484,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,622,581 - 32,624,648 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,588,213 - 32,590,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,587,985 - 32,590,279 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,555,887 - 32,557,954 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,512,340 - 32,514,407 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,691,425 - 32,693,492 (+)NCBIUU_Cfam_GSD_1.0
Tnfsf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,365,741 - 47,368,769 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595839,877 - 842,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595839,877 - 842,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,853,904 - 52,857,029 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,853,646 - 52,857,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103242307
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,935,073 - 6,938,792 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,926,584 - 6,938,019 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,469,608 - 14,473,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015184   ⟹   ENSHGLP00000015030
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478610,175,859 - 10,179,233 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000015185   ⟹   ENSHGLP00000015031
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478610,176,503 - 10,178,355 (+)Ensembl
RefSeq Acc Id: XM_013076791   ⟹   XP_012932245
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,176,201 - 10,179,233 (+)NCBI
RefSeq Acc Id: XM_021238143   ⟹   XP_021093802
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,176,201 - 10,179,233 (+)NCBI
RefSeq Acc Id: XM_021238145   ⟹   XP_021093804
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,175,534 - 10,179,233 (+)NCBI
RefSeq Acc Id: XM_021238146   ⟹   XP_021093805
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,176,201 - 10,179,233 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012932245 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093802 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093804 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093805 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015030
  ENSHGLP00000015031
Reference Protein Sequences
RefSeq Acc Id: XP_021093804   ⟸   XM_021238145
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021093802   ⟸   XM_021238143
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012932245   ⟸   XM_013076791
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021093805   ⟸   XM_021238146
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000015031   ⟸   ENSHGLT00000015185
RefSeq Acc Id: ENSHGLP00000015030   ⟸   ENSHGLT00000015184


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010768 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015184 ENTREZGENE
  ENSHGLT00000015185 ENTREZGENE
NCBI Gene Tnfsf13 ENTREZGENE