Piga (phosphatidylinositol glycan anchor biosynthesis, class A) - Rat Genome Database

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Gene: Piga (phosphatidylinositol glycan anchor biosynthesis, class A) Mus musculus
Analyze
Symbol: Piga
Name: phosphatidylinositol glycan anchor biosynthesis, class A
RGD ID: 11100
MGI Page MGI
Description: Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Acts upstream of or within GPI anchor biosynthetic process and cellular response to leukemia inhibitory factor. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Is expressed in 1st branchial arch; central nervous system; heart; limb; and medial-nasal process. Used to study autosomal recessive congenital ichthyosis 4B. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 2 and paroxysmal nocturnal hemoglobinuria. Orthologous to human PIGA (phosphatidylinositol glycan anchor biosynthesis class A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI194334; glcNAc-PI synthesis protein; N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; phosphatidylinositol glycan, class A; phosphatidylinositol N-acetylglucosaminyltransferase subunit A; phosphatidylinositol-glycan biosynthesis class A protein; phosphatidylinositolglycan class A; Pi; Pig-a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm19121  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,202,814 - 163,216,912 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,202,783 - 163,216,912 (+)EnsemblGRCm39 Ensembl
GRCm38X164,419,780 - 164,433,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,419,787 - 164,433,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,857,719 - 160,871,847 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,763,921 - 159,778,021 (+)NCBIMGSCv36mm8
CeleraX147,635,146 - 147,649,303 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (EXP)
1,2-dichloroethene  (ISO)
1,3-Propane sultone  (ISO)
1,4-phenylenediamine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,4,3',4'-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-acetamidofluorene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-nitroquinoline N-oxide  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (EXP)
amiodarone  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
aristolochic acids  (ISO)
Aroclor 1254  (EXP)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (EXP)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorambucil  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dicrotophos  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (EXP,ISO)
etoposide  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
glucose  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
morphine  (EXP)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP,ISO)
N-methyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
nicotine  (EXP)
paracetamol  (EXP,ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
pyrene  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
Thiotepa  (ISO)
trans-1,2-dichloroethene  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Comparative FISH mapping of mouse and rat homologues of twenty-five human X-linked genes. Kuroiwa A, etal., Cytogenet Cell Genet 1998;81(3-4):208-12.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. The spectrum of PIG-A gene mutations in aplastic anemia/paroxysmal nocturnal hemoglobinuria (AA/PNH): a high incidence of multiple mutations and evidence of a mutational hot spot. Mortazavi Y, etal., Blood. 2003 Apr 1;101(7):2833-41. Epub 2002 Nov 7.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7487983   PMID:7734452   PMID:7851884   PMID:8204896   PMID:8500164   PMID:8611683   PMID:8921399   PMID:9069578   PMID:9207103   PMID:9215685   PMID:9276719   PMID:9692885  
PMID:9722947   PMID:9722956   PMID:10092065   PMID:10349636   PMID:10377440   PMID:10556176   PMID:10556178   PMID:11042159   PMID:11076861   PMID:11535627   PMID:11568013   PMID:12060394  
PMID:12477932   PMID:12488505   PMID:12676797   PMID:12692150   PMID:14681479   PMID:15238423   PMID:15297852   PMID:15304084   PMID:15356128   PMID:16141072   PMID:16141073   PMID:16452715  
PMID:17967808   PMID:18799693   PMID:19679885   PMID:19762422   PMID:20439489   PMID:21267068   PMID:21460244   PMID:21865342   PMID:21873635   PMID:22227195   PMID:25308545   PMID:26084695  
PMID:27739633   PMID:29098723   PMID:29115020   PMID:29150045   PMID:31232685   PMID:32050029   PMID:32179897   PMID:33607654   PMID:35752737  


Genomics

Comparative Map Data
Piga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,202,814 - 163,216,912 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,202,783 - 163,216,912 (+)EnsemblGRCm39 Ensembl
GRCm38X164,419,780 - 164,433,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,419,787 - 164,433,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,857,719 - 160,871,847 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,763,921 - 159,778,021 (+)NCBIMGSCv36mm8
CeleraX147,635,146 - 147,649,303 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.49NCBI
PIGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,319,451 - 15,335,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX15,319,452 - 15,335,554 (-)EnsemblGRCh38hg38GRCh38
GRCh37X15,337,573 - 15,353,676 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,247,499 - 15,263,581 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX19,453,077 - 19,469,182 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,096,081 - 13,112,522 (-)NCBIHuRef
CHM1_1X15,368,527 - 15,384,630 (-)NCBICHM1_1
T2T-CHM13v2.0X14,902,337 - 14,918,440 (-)NCBIT2T-CHM13v2.0
Piga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X33,672,832 - 33,687,747 (-)NCBIGRCr8
mRatBN7.2X30,043,033 - 30,055,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,042,343 - 30,055,804 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX31,082,324 - 31,095,044 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X34,512,908 - 34,525,604 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X30,706,657 - 30,719,377 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X31,786,823 - 31,799,751 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,786,194 - 31,799,560 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,160,574 - 32,173,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,797,413 - 50,812,217 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX30,389,874 - 30,399,559 (-)NCBICelera
Cytogenetic MapXq14NCBI
Piga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,852,555 - 2,867,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,852,605 - 2,865,848 (+)NCBIChiLan1.0ChiLan1.0
PIGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,118,790 - 17,135,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,122,457 - 17,139,351 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X7,946,158 - 7,962,320 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X15,228,881 - 15,244,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,228,881 - 15,244,949 (-)Ensemblpanpan1.1panPan2
PIGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,570,327 - 11,583,401 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,477,560 - 11,490,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X11,532,405 - 11,545,403 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X11,595,315 - 11,608,309 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X11,586,669 - 11,599,667 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X11,614,747 - 11,627,744 (-)NCBIUU_Cfam_GSD_1.0
Piga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X4,730,960 - 4,747,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364704,730,961 - 4,746,985 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364704,730,955 - 4,746,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,871,750 - 11,886,438 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,871,746 - 11,886,519 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,832,314 - 12,847,100 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X13,787,658 - 13,803,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX13,787,646 - 13,803,405 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605615,624,328 - 15,640,151 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Piga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829128,586 - 142,150 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829128,161 - 143,378 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Piga
352 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4442
Count of miRNA genes:818
Interacting mature miRNAs:1141
Transcripts:ENSMUST00000033754, ENSMUST00000112255, ENSMUST00000112257, ENSMUST00000133813, ENSMUST00000151911, ENSMUST00000155849
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse

Markers in Region
RH135928  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,426,307 - 164,426,500UniSTSGRCm38
MGSCv37X160,864,239 - 160,864,432UniSTSGRCm37
CeleraX147,641,572 - 147,641,765UniSTS
Cytogenetic MapXF3-F4UniSTS
D26047  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,432,903 - 164,433,041UniSTSGRCm38
MGSCv37X160,870,835 - 160,870,973UniSTSGRCm37
CeleraX147,648,291 - 147,648,429UniSTS
Cytogenetic MapXF3-F4UniSTS
Whitehead/MRC_RHX1990.44UniSTS
Whitehead/MRC_RHX1990.96UniSTS
BF387721  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,431,839 - 164,432,018UniSTSGRCm38
MGSCv37X160,869,771 - 160,869,950UniSTSGRCm37
CeleraX147,647,237 - 147,647,416UniSTS
Cytogenetic MapXF3-F4UniSTS
PMC22111P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,422,633 - 164,423,251UniSTSGRCm38
MGSCv37X160,860,565 - 160,861,183UniSTSGRCm37
Cytogenetic MapXF3-F4UniSTS
PMC23833P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X164,430,290 - 164,430,530UniSTSGRCm38
MGSCv37X160,868,222 - 160,868,462UniSTSGRCm37
CeleraX147,645,555 - 147,645,791UniSTS
Cytogenetic MapXF3-F4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB707289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB771632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY270710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D31863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S78188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000033754   ⟹   ENSMUSP00000033754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,783 - 163,216,912 (+)Ensembl
GRCm38.p6 EnsemblX164,419,787 - 164,433,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112255   ⟹   ENSMUSP00000107874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,905 - 163,216,909 (+)Ensembl
GRCm38.p6 EnsemblX164,419,909 - 164,433,913 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112257   ⟹   ENSMUSP00000137831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,783 - 163,216,907 (+)Ensembl
GRCm38.p6 EnsemblX164,419,787 - 164,433,911 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133813   ⟹   ENSMUSP00000122176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,205,580 - 163,214,968 (+)Ensembl
GRCm38.p6 EnsemblX164,422,584 - 164,431,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151911   ⟹   ENSMUSP00000138077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,783 - 163,216,912 (+)Ensembl
GRCm38.p6 EnsemblX164,419,787 - 164,433,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,208,506 - 163,215,051 (+)Ensembl
GRCm38.p6 EnsemblX164,425,510 - 164,432,055 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208261   ⟹   ENSMUSP00000146808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,803 - 163,214,868 (+)Ensembl
GRCm38.p6 EnsemblX164,419,807 - 164,431,872 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208697   ⟹   ENSMUSP00000146731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,794 - 163,215,056 (+)Ensembl
GRCm38.p6 EnsemblX164,419,798 - 164,432,060 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208741   ⟹   ENSMUSP00000147146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX163,202,783 - 163,214,832 (+)Ensembl
GRCm38.p6 EnsemblX164,419,787 - 164,431,836 (+)Ensembl
RefSeq Acc Id: NM_011081   ⟹   NP_035211
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,202,814 - 163,216,912 (+)NCBI
GRCm38X164,419,780 - 164,433,915 (+)NCBI
MGSCv37X160,857,719 - 160,871,847 (+)RGD
CeleraX147,635,146 - 147,649,303 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152315
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,202,814 - 163,216,912 (+)NCBI
GRCm38X164,419,780 - 164,433,915 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011247793   ⟹   XP_011246095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,206,675 - 163,216,912 (+)NCBI
GRCm38X164,425,280 - 164,433,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318428   ⟹   XP_017173917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X163,202,862 - 163,216,912 (+)NCBI
GRCm38X164,419,868 - 164,433,916 (+)NCBI
Sequence:
RefSeq Acc Id: NP_035211   ⟸   NM_011081
- UniProtKB: Q6LD71 (UniProtKB/Swiss-Prot),   Q8CCQ6 (UniProtKB/Swiss-Prot),   Q64323 (UniProtKB/Swiss-Prot),   A2AIH5 (UniProtKB/TrEMBL),   Q3TU17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246095   ⟸   XM_011247793
- Peptide Label: isoform X2
- UniProtKB: A0A140LI97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173917   ⟸   XM_017318428
- Peptide Label: isoform X1
- UniProtKB: Q6LD71 (UniProtKB/Swiss-Prot),   Q8CCQ6 (UniProtKB/Swiss-Prot),   Q64323 (UniProtKB/Swiss-Prot),   A2AIH5 (UniProtKB/TrEMBL),   Q3TU17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000138077   ⟸   ENSMUST00000151911
RefSeq Acc Id: ENSMUSP00000107874   ⟸   ENSMUST00000112255
RefSeq Acc Id: ENSMUSP00000137831   ⟸   ENSMUST00000112257
RefSeq Acc Id: ENSMUSP00000033754   ⟸   ENSMUST00000033754
RefSeq Acc Id: ENSMUSP00000147146   ⟸   ENSMUST00000208741
RefSeq Acc Id: ENSMUSP00000146731   ⟸   ENSMUST00000208697
RefSeq Acc Id: ENSMUSP00000146808   ⟸   ENSMUST00000208261
RefSeq Acc Id: ENSMUSP00000122176   ⟸   ENSMUST00000133813
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64323-F1-model_v2 AlphaFold Q64323 1-485 view protein structure

Promoters
RGD ID:6846095
Promoter ID:MM_KWN:62694
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000112255,   NM_011081,   OTTMUST00000046586,   UC009UVN.1,   UC009UVP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X160,857,291 - 160,857,862 (+)MPROMDB
RGD ID:6846091
Promoter ID:MM_KWN:62696
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000073093
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X160,861,011 - 160,861,511 (+)MPROMDB
RGD ID:6846092
Promoter ID:MM_KWN:62697
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Spleen
Transcripts:OTTMUST00000046589
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X160,863,596 - 160,864,096 (+)MPROMDB
RGD ID:13681822
Promoter ID:EPDNEW_M25060
Type:multiple initiation site
Name:Piga_1
Description:Mus musculus phosphatidylinositol glycan anchor biosynthesis,class A , transcript variant 2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X164,419,818 - 164,419,878EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99461 AgrOrtholog
Ensembl Genes ENSMUSG00000031381 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033754 ENTREZGENE
  ENSMUST00000033754.15 UniProtKB/Swiss-Prot
  ENSMUST00000112255 ENTREZGENE
  ENSMUST00000112255.8 UniProtKB/Swiss-Prot
  ENSMUST00000112257 ENTREZGENE
  ENSMUST00000112257.10 UniProtKB/TrEMBL
  ENSMUST00000133813.3 UniProtKB/TrEMBL
  ENSMUST00000151911.9 UniProtKB/TrEMBL
  ENSMUST00000208261.2 UniProtKB/TrEMBL
  ENSMUST00000208697 ENTREZGENE
  ENSMUST00000208697.2 UniProtKB/TrEMBL
  ENSMUST00000208741.2 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIG-A/GPI3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIGA_GPI_anchor_biosynthesis UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99461 ENTREZGENE
NCBI Gene 18700 ENTREZGENE
PANTHER N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_trans_1_4 UniProtKB/TrEMBL
  Glycos_transf_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIGA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Piga PhenoGen
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LI97 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LIG1_MOUSE UniProtKB/TrEMBL
  A0A140LJB2_MOUSE UniProtKB/TrEMBL
  A2AIH4_MOUSE UniProtKB/TrEMBL
  A2AIH5 ENTREZGENE, UniProtKB/TrEMBL
  M0QWH5_MOUSE UniProtKB/TrEMBL
  M0QWY7_MOUSE UniProtKB/TrEMBL
  PIGA_MOUSE UniProtKB/Swiss-Prot
  Q3TB52_MOUSE UniProtKB/TrEMBL
  Q3TU17 ENTREZGENE, UniProtKB/TrEMBL
  Q64323 ENTREZGENE
  Q6LD71 ENTREZGENE
  Q6PDD9_MOUSE UniProtKB/TrEMBL
  Q80XC7_MOUSE UniProtKB/TrEMBL
  Q8CCQ6 ENTREZGENE
UniProt Secondary Q6LD71 UniProtKB/Swiss-Prot
  Q8CCQ6 UniProtKB/Swiss-Prot