Htr4 (5 hydroxytryptamine (serotonin) receptor 4) - Rat Genome Database

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Gene: Htr4 (5 hydroxytryptamine (serotonin) receptor 4) Mus musculus
Analyze
Symbol: Htr4
Name: 5 hydroxytryptamine (serotonin) receptor 4
RGD ID: 10750
MGI Page MGI
Description: Enables G protein-coupled serotonin receptor activity. Involved in several processes, including maintenance of gastrointestinal epithelium; mucus secretion; and regulation of postsynapse assembly. Is active in glutamatergic synapse; plasma membrane; and postsynapse. Is expressed in several structures, including brain; gallbladder; genitourinary system; gut; and spinal cord. Used to study anorexia nervosa. Orthologous to human HTR4 (5-hydroxytryptamine receptor 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5-HT-4; 5-HT4; 5-HT<4L; 5-HT<4L>; 5-hydroxytryptamine receptor 4; 5HTR4; serotonin receptor 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391862,456,618 - 62,636,098 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1862,457,275 - 62,629,648 (+)EnsemblGRCm39 Ensembl
GRCm381862,323,546 - 62,503,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1862,324,204 - 62,496,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv371862,483,858 - 62,627,456 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361862,449,573 - 62,593,171 (+)NCBIMGSCv36mm8
Celera1863,595,586 - 63,739,634 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1835.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The 5-HT4 receptor: molecular cloning and pharmacological characterization of two splice variants. Gerald C, etal., EMBO J 1995 Jun 15;14(12):2806-15.
2. Identification of candidate lung cancer susceptibility genes in mouse using oligonucleotide arrays. Lemon WJ, etal., J Med Genet 2002 Sep;39(9):644-55.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7656980   PMID:8946946   PMID:9928238   PMID:10220570   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14724239   PMID:15146954   PMID:15466885  
PMID:15774473   PMID:15820713   PMID:15919661   PMID:16037544   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16930432   PMID:16978609   PMID:16990446   PMID:17377064   PMID:17445258  
PMID:17913892   PMID:18075492   PMID:18287559   PMID:19211900   PMID:19657021   PMID:19661922   PMID:19737523   PMID:19906978   PMID:19998416   PMID:20060867   PMID:20209108   PMID:20404165  
PMID:20805681   PMID:21247891   PMID:21267068   PMID:21300076   PMID:21410937   PMID:21873635   PMID:22079627   PMID:22226658   PMID:22330338   PMID:22348892   PMID:22564922   PMID:22699012  
PMID:22903372   PMID:23089640   PMID:23378516   PMID:24183679   PMID:24492464   PMID:24952961   PMID:25342126   PMID:26053401   PMID:26468187   PMID:26658112   PMID:27072889   PMID:27423314  
PMID:27586007   PMID:27874067   PMID:28031476   PMID:28108396   PMID:28130264   PMID:28332745   PMID:29069597   PMID:29706583   PMID:29754752   PMID:29902441   PMID:30971711   PMID:31325432  
PMID:32060357   PMID:32283526   PMID:32870377   PMID:33299969   PMID:33441982   PMID:37766457  


Genomics

Comparative Map Data
Htr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391862,456,618 - 62,636,098 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1862,457,275 - 62,629,648 (+)EnsemblGRCm39 Ensembl
GRCm381862,323,546 - 62,503,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1862,324,204 - 62,496,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv371862,483,858 - 62,627,456 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361862,449,573 - 62,593,171 (+)NCBIMGSCv36mm8
Celera1863,595,586 - 63,739,634 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1835.1NCBI
HTR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385148,451,032 - 148,654,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5148,446,042 - 148,677,235 (-)EnsemblGRCh38hg38GRCh38
GRCh375147,830,595 - 148,034,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365147,810,788 - 148,013,934 (-)NCBINCBI36Build 36hg18NCBI36
Build 345147,841,291 - 148,013,909NCBI
Celera5143,909,957 - 144,112,979 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5142,977,652 - 143,180,200 (-)NCBIHuRef
CHM1_15147,263,294 - 147,466,440 (-)NCBICHM1_1
T2T-CHM13v2.05148,985,559 - 149,189,026 (-)NCBIT2T-CHM13v2.0
Htr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81858,036,277 - 58,221,327 (+)NCBIGRCr8
mRatBN7.21855,765,981 - 55,949,921 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1855,766,725 - 55,949,321 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1857,859,595 - 58,004,005 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01858,573,357 - 58,718,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01856,389,844 - 56,534,835 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01857,637,013 - 57,820,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1857,654,290 - 57,819,698 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01856,863,669 - 57,046,345 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41858,417,163 - 58,468,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11858,489,392 - 58,542,436 (+)NCBI
Celera1853,929,187 - 54,054,080 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Htr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554155,685,309 - 5,802,409 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554155,745,056 - 5,802,409 (+)NCBIChiLan1.0ChiLan1.0
HTR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24143,683,697 - 144,013,085 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15141,823,246 - 142,152,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05143,918,925 - 144,208,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15149,889,969 - 150,097,024 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5149,889,969 - 150,108,357 (-)Ensemblpanpan1.1panPan2
HTR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1460,224,534 - 60,359,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl460,185,056 - 60,353,439 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha459,949,833 - 60,122,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0460,674,206 - 60,843,707 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl460,674,419 - 60,840,580 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1460,454,461 - 60,627,575 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0460,581,160 - 60,754,247 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0461,099,415 - 61,272,556 (+)NCBIUU_Cfam_GSD_1.0
Htr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213144,536,506 - 144,732,575 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365046,146,974 - 6,265,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365046,146,974 - 6,306,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2149,731,034 - 149,912,495 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12149,768,295 - 149,813,801 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22156,451,710 - 156,485,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HTR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12351,087,430 - 51,279,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2351,087,285 - 51,182,200 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603426,474,972 - 26,668,312 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Htr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247747,887,577 - 8,027,500 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247747,851,451 - 8,027,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Htr4
6827 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1136
Count of miRNA genes:585
Interacting mature miRNAs:739
Transcripts:ENSMUST00000027560
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse

Markers in Region
Htr4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,437,470 - 62,437,548UniSTSGRCm38
MGSCv371862,597,124 - 62,597,202UniSTSGRCm37
Celera1863,709,117 - 63,709,195UniSTS
Cytogenetic Map18D3UniSTS
cM Map18 UniSTS
38.MMHAP81FRE11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,362,089 - 62,362,256UniSTSGRCm38
GRCm381862,361,429 - 62,362,256UniSTSGRCm38
MGSCv371862,521,743 - 62,521,910UniSTSGRCm37
MGSCv371862,521,083 - 62,521,910UniSTSGRCm37
Celera1863,632,795 - 63,633,357UniSTS
Cytogenetic Map18D3UniSTS
Whitehead_YAC18 UniSTS
D18Mit139  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,410,240 - 62,410,361UniSTSGRCm38
MGSCv371862,569,894 - 62,570,015UniSTSGRCm37
Celera1863,681,360 - 63,681,481UniSTS
Cytogenetic Map18D3UniSTS
cM Map1837.0UniSTS
Whitehead Genetic1825.1UniSTS
Whitehead_YAC18 UniSTS
D18Mit228  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,333,620 - 62,333,726UniSTSGRCm38
MGSCv371862,493,274 - 62,493,380UniSTSGRCm37
Celera1863,604,934 - 63,605,044UniSTS
Cytogenetic Map18D3UniSTS
cM Map1838.0UniSTS
Whitehead Genetic1825.1UniSTS
Whitehead_YAC18 UniSTS
Htr4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D3UniSTS
Htr4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,464,529 - 62,464,649UniSTSGRCm38
Celera1863,736,361 - 63,736,481UniSTS
Cytogenetic Map18D3UniSTS
Htr4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D3UniSTS
Htr4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC152454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN418927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN418928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN418929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN418930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y09588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027560   ⟹   ENSMUSP00000027560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,457,275 - 62,600,877 (+)Ensembl
GRCm38.p6 Ensembl1862,324,204 - 62,467,806 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236691   ⟹   ENSMUSP00000157470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,474,121 - 62,629,648 (+)Ensembl
GRCm38.p6 Ensembl1862,341,050 - 62,496,577 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237114   ⟹   ENSMUSP00000157982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,474,082 - 62,597,718 (+)Ensembl
GRCm38.p6 Ensembl1862,341,011 - 62,464,647 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238081   ⟹   ENSMUSP00000157967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,474,121 - 62,629,623 (+)Ensembl
GRCm38.p6 Ensembl1862,341,050 - 62,496,552 (+)Ensembl
RefSeq Acc Id: NM_001364956   ⟹   NP_001351885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,474,076 - 62,600,877 (+)NCBI
GRCm381862,341,005 - 62,467,806 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364957   ⟹   NP_001351886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,474,076 - 62,629,648 (+)NCBI
GRCm381862,341,005 - 62,496,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364958   ⟹   NP_001351887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,474,076 - 62,629,648 (+)NCBI
GRCm381862,341,005 - 62,496,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364959   ⟹   NP_001351888
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,474,076 - 62,629,648 (+)NCBI
GRCm381862,341,005 - 62,496,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008313   ⟹   NP_032339
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,457,275 - 62,600,873 (+)NCBI
GRCm381862,324,204 - 62,467,802 (+)NCBI
MGSCv371862,483,858 - 62,627,456 (+)RGD
Celera1863,595,586 - 63,739,634 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525676   ⟹   XP_006525739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,668 - 62,600,221 (+)NCBI
GRCm381862,323,592 - 62,464,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525678   ⟹   XP_006525741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,457,166 - 62,600,221 (+)NCBI
GRCm381862,324,095 - 62,464,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525680   ⟹   XP_006525743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,661 - 62,636,098 (+)NCBI
GRCm381862,323,584 - 62,503,027 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525681   ⟹   XP_006525744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,654 - 62,600,877 (+)NCBI
GRCm381862,323,562 - 62,467,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525682   ⟹   XP_006525745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,654 - 62,629,514 (+)NCBI
GRCm381862,323,561 - 62,496,444 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525683   ⟹   XP_006525746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,655 - 62,636,098 (+)NCBI
GRCm381862,323,562 - 62,503,027 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246848   ⟹   XP_011245150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,657 - 62,579,978 (+)NCBI
GRCm381862,323,582 - 62,446,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250343   ⟹   XP_030106203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,668 - 62,604,435 (+)NCBI
GRCm381862,323,592 - 62,471,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250344   ⟹   XP_030106204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,664 - 62,600,221 (+)NCBI
GRCm381862,323,588 - 62,464,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250345   ⟹   XP_030106205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,657 - 62,630,436 (+)NCBI
GRCm381862,324,175 - 62,503,027 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250347   ⟹   XP_030106207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,456,618 - 62,604,435 (+)NCBI
GRCm381862,323,546 - 62,471,364 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001351885 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351886 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351887 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351888 (Get FASTA)   NCBI Sequence Viewer  
  NP_032339 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525739 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525741 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525743 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525744 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525745 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525746 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245150 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106203 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106204 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106205 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106207 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AET74078 (Get FASTA)   NCBI Sequence Viewer  
  AET74079 (Get FASTA)   NCBI Sequence Viewer  
  AET74080 (Get FASTA)   NCBI Sequence Viewer  
  AET74081 (Get FASTA)   NCBI Sequence Viewer  
  BAE24750 (Get FASTA)   NCBI Sequence Viewer  
  BAE24773 (Get FASTA)   NCBI Sequence Viewer  
  CAA09598 (Get FASTA)   NCBI Sequence Viewer  
  CAA70773 (Get FASTA)   NCBI Sequence Viewer  
  CAA70775 (Get FASTA)   NCBI Sequence Viewer  
  CAA70776 (Get FASTA)   NCBI Sequence Viewer  
  EDL09741 (Get FASTA)   NCBI Sequence Viewer  
  EDL09742 (Get FASTA)   NCBI Sequence Viewer  
  EDL09743 (Get FASTA)   NCBI Sequence Viewer  
  EDL09744 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000027560
  ENSMUSP00000027560.7
  ENSMUSP00000157470
  ENSMUSP00000157470.2
  ENSMUSP00000157967
  ENSMUSP00000157967.2
  ENSMUSP00000157982
  ENSMUSP00000157982.2
GenBank Protein P97288 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032339   ⟸   NM_008313
- Peptide Label: isoform 1
- UniProtKB: P97288 (UniProtKB/Swiss-Prot),   Q3URB5 (UniProtKB/Swiss-Prot),   O89004 (UniProtKB/Swiss-Prot),   O89003 (UniProtKB/Swiss-Prot),   Q9R2A4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525745   ⟸   XM_006525682
- Peptide Label: isoform X3
- UniProtKB: A0A494BA82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525744   ⟸   XM_006525681
- Peptide Label: isoform X3
- UniProtKB: A0A494BA82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525746   ⟸   XM_006525683
- Peptide Label: isoform X4
- UniProtKB: P97288 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525743   ⟸   XM_006525680
- Peptide Label: isoform X2
- UniProtKB: P97288 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525739   ⟸   XM_006525676
- Peptide Label: isoform X1
- UniProtKB: P97288 (UniProtKB/Swiss-Prot),   Q3URB5 (UniProtKB/Swiss-Prot),   O89004 (UniProtKB/Swiss-Prot),   O89003 (UniProtKB/Swiss-Prot),   Q9R2A4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525741   ⟸   XM_006525678
- Peptide Label: isoform X1
- UniProtKB: P97288 (UniProtKB/Swiss-Prot),   Q3URB5 (UniProtKB/Swiss-Prot),   O89004 (UniProtKB/Swiss-Prot),   O89003 (UniProtKB/Swiss-Prot),   Q9R2A4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245150   ⟸   XM_011246848
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030106207   ⟸   XM_030250347
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030106204   ⟸   XM_030250344
- Peptide Label: isoform X1
- UniProtKB: Q3URB5 (UniProtKB/Swiss-Prot),   P97288 (UniProtKB/Swiss-Prot),   O89004 (UniProtKB/Swiss-Prot),   O89003 (UniProtKB/Swiss-Prot),   Q9R2A4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106203   ⟸   XM_030250343
- Peptide Label: isoform X1
- UniProtKB: Q3URB5 (UniProtKB/Swiss-Prot),   P97288 (UniProtKB/Swiss-Prot),   O89004 (UniProtKB/Swiss-Prot),   O89003 (UniProtKB/Swiss-Prot),   Q9R2A4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106205   ⟸   XM_030250345
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001351887   ⟸   NM_001364958
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001351888   ⟸   NM_001364959
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001351886   ⟸   NM_001364957
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001351885   ⟸   NM_001364956
- Peptide Label: isoform 2
- UniProtKB: A0A494BA82 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000027560   ⟸   ENSMUST00000027560
Ensembl Acc Id: ENSMUSP00000157982   ⟸   ENSMUST00000237114
Ensembl Acc Id: ENSMUSP00000157470   ⟸   ENSMUST00000236691
Ensembl Acc Id: ENSMUSP00000157967   ⟸   ENSMUST00000238081
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97288-F1-model_v2 AlphaFold P97288 1-388 view protein structure

Promoters
RGD ID:13677978
Promoter ID:EPDNEW_M23138
Type:multiple initiation site
Name:Htr4_1
Description:Mus musculus 5 hydroxytryptamine receptor 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23139  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381862,324,204 - 62,324,264EPDNEW
RGD ID:13677980
Promoter ID:EPDNEW_M23139
Type:single initiation site
Name:Htr4_2
Description:Mus musculus 5 hydroxytryptamine receptor 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23138  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381862,332,591 - 62,332,651EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109246 AgrOrtholog
Ensembl Genes ENSMUSG00000026322 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027560 ENTREZGENE
  ENSMUST00000027560.8 UniProtKB/Swiss-Prot
  ENSMUST00000236691 ENTREZGENE
  ENSMUST00000236691.2 UniProtKB/Swiss-Prot
  ENSMUST00000237114 ENTREZGENE
  ENSMUST00000237114.2 UniProtKB/TrEMBL
  ENSMUST00000238081 ENTREZGENE
  ENSMUST00000238081.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 5HT4_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15562 UniProtKB/Swiss-Prot
MGD MGI:109246 ENTREZGENE
NCBI Gene 15562 ENTREZGENE
PANTHER ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OCTOPAMINE RECEPTOR BETA-3R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Htr4 PhenoGen
PRINTS 5HT4RECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt 5HT4R_MOUSE UniProtKB/Swiss-Prot
  A0A494BA82 ENTREZGENE, UniProtKB/TrEMBL
  G8H732_MOUSE UniProtKB/TrEMBL
  G8H733_MOUSE UniProtKB/TrEMBL
  G8H734_MOUSE UniProtKB/TrEMBL
  G8H735_MOUSE UniProtKB/TrEMBL
  O89003 ENTREZGENE
  O89004 ENTREZGENE
  P97288 ENTREZGENE
  Q3URB5 ENTREZGENE
  Q9R2A4 ENTREZGENE
UniProt Secondary O89003 UniProtKB/Swiss-Prot
  O89004 UniProtKB/Swiss-Prot
  Q3URB5 UniProtKB/Swiss-Prot
  Q9R2A4 UniProtKB/Swiss-Prot