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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:blood HDL cholesterol amount
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Accession:VT:0000184 term browser browse the term
Definition:The proportion, quantity, or volume in whole blood, serum, or plasma of the small lipoprotein:cholesterol complex that transports cholesterol out of the arteries and to the liver for reprocessing or excretion.
Synonyms:exact_synonym: blood HDL-C amount;   blood high density lipoprotein cholesterol amount;   circulating HDL cholesterol amount
 related_synonym: HDL cholesterol level;   HDL level;   circulating HDL cholesterol level


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blood HDL cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl12 Serum cholesterol level QTL 12 IDA RGD PMID:8698878 RGD:61079 NCBI chr19:13,926,401...30,303,727 JBrowse link
Q Scl27 Serum cholesterol level QTL 27 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:52,292,875...59,796,643 JBrowse link
Q Scl28 Serum cholesterol level QTL 28 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:11,944,299...24,797,117 JBrowse link
Q Scl32 Serum cholesterol level QTL 32 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:15,781,592...60,781,592 JBrowse link
Q Scl61 Serum cholesterol level QTL 61 IDA RGD PMID:10720472 RGD:619689 NCBI chr17:27,389,946...53,481,766 JBrowse link
Q Scl79 Serum cholesterol level QTL 79 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 7:89,867,376...101,773,158 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2888
    organism trait 1150
      homeostasis trait 694
        blood homeostasis trait 534
          blood molecular composition trait 534
            blood lipid amount 155
              blood sterol amount 99
                blood cholesterol amount 99
                  blood HDL cholesterol amount 16
Path 2
Term Annotations click to browse term
  vertebrate trait 2888
    organism trait 1150
      homeostasis trait 694
        molecule homeostasis trait 362
          lipid homeostasis trait 161
            sterol homeostasis trait 105
              sterol amount 105
                cholesterol amount 105
                  blood cholesterol amount 99
                    blood HDL cholesterol amount 16
paths to the root