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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:coding_sequence_variant
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Accession:SO:0001580 term browser browse the term
Definition:A sequence variant that changes the coding sequence.
Synonyms:exact_synonym: Jannovar:coding_sequence_variant;   Seattleseq:coding;   VAAST:coding_sequence_variant;   VEP:coding_sequence_variant;   coding sequence variant;   coding variant;   codon variant;   codon_variant;   snpEff:CDS
 related_synonym: snpEff:CODON_CHANGE
 alt_id: SO:0001581
 xref: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq";   http://snpeff.sourceforge.net/SnpEff_manual.html;   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences


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Term paths to the root
Path 1
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  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              coding_transcript_variant 0
                coding_sequence_variant 0
                  initiator_codon_variant + 0
                  protein_altering_variant + 0
                  synonymous_variant + 0
                  terminator_codon_variant + 0
paths to the root