coding_sequence_variant - Ontology Browser - Rat Genome Database

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Ontology Browser

coding_sequence_variant (SO:0001580)
Annotations: Rat: (0) Mouse: (0) Human: (0) Chinchilla: (0) Bonobo: (0) Dog: (0) Squirrel: (0) Pig: (0)

Parent Terms

Term With Siblings

Child Terms

coding transcript variant + is-a

is-a

exon variant + is-a

is-a

coding sequence variant +

A sequence variant that changes the coding sequence.

coding transcript intron variant +

non coding transcript exon variant

UTR variant +

is-a

initiator codon variant +

is-a

protein altering variant +

is-a

synonymous variant +

is-a

terminator codon variant +

Synonyms
Exact Synonyms:	Jannovar:coding_sequence_variant ; Seattleseq:coding ; VAAST:coding_sequence_variant ; VEP:coding_sequence_variant ; coding sequence variant ; coding variant ; codon variant ; codon_variant ; snpEff:CDS
Related Synonyms:	snpEff:CODON_CHANGE
Alternate IDs:	SO:0001581
Xrefs:	EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html ; http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq" ; http://snpeff.sourceforge.net/SnpEff_manual.html ; http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
Definition Sources:	SO:ke

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