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SEQUENCE ONTOLOGY - ANNOTATIONS

The Sequence Types and Features Ontology (SO) is downloaded weekly from the SourceForge CVS repository at http://song.cvs.sourceforge.net/viewvc/song/ontology/. For more information about this ontology, see the Sequence Ontology Home Page at http://www.sequenceontology.org/.
Term:synonymous_variant
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Accession:SO:0001819 term browser browse the term
Definition:A sequence variant where there is no resulting change to the encoded amino acid.
Comment:EBI term: Synonymous SNPs - In coding sequence, not resulting in an amino acid change (i.e. silent mutation).\nThis term is sometimes used synonomously with the more general term 'silent mutation', although a silent mutation may occur in non coding sequence. The best practice is to annotate to the most specific term.
Synonyms:exact_synonym: Jannovar:synonymous_variant;   Seattleseq:synonymous;   VAAST:synonymous_codon;   VAAST:synonymous_variant;   VAT:synonymous;   VEP:synonymous_variant;   coding-synon;   snpEff:SYNONYMOUS_CODING;   synonymous codon;   synonymous_coding;   synonymous_codon
 related_synonym: ANNOVAR:synonymous SNV;   Seattleseq:synonymous-near-splice;   silent mutation;   silent substitution;   silent_mutation
 alt_id: SO:0001588
 xref: EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html;   http://en.wikipedia.org/wiki/Silent_mutation "wiki";   http://en.wikipedia.org/wiki/Synonymous_mutation;   http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp "Seattleseq";   http://snpeff.sourceforge.net/SnpEff_manual.html;   http://vat.gersteinlab.org/formats.php "VAT";   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences


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  SO ontology 0
    sequence_variant 0
      structural_variant 0
        feature_variant 0
          gene_variant 0
            transcript_variant 0
              coding_transcript_variant 0
                coding_sequence_variant 0
                  synonymous_variant 0
                    start_retained_variant 0
                    stop_retained_variant 0
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