abnormal somite border morphology - Ontology Report - Rat Genome Database

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The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:	abnormal somite border morphology	go back to main search page
Accession:	MP:0012728	browse the term
Definition:	any structural anomaly of the anatomical surface separating somites; somite formation requires the physical separation of somitic tissue from the initially continuous presomitic mesoderm (PSM), coalescence of cells in the forming somite, and the establishment of a stable border between the somite and the PSM; when a somite forms in the anterior end of the PSM, an intersomitic boundary (also called a fissure, gap, or cleft) emerges, and it is rapidly followed by a mesenchymal-to-epithelial transition of cells that face a forming gap
Synonyms:	exact_synonym:	abnormal inter-somite border morphology; abnormal intersomitic boundary morphology; abnormal intersomitic fissure morphology; abnormal segmental border morphology; abnormal somite border cell morphology; abnormal somite boundary morphology

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Rat (0) Mouse (9) Human (0) Chinchilla (0) Bonobo (0) Dog (0) Squirrel (0) Pig (0) Green Monkey (0) Naked Mole-rat (0) All
Genes (9)

abnormal somite border morphology

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

a disintegrin and metallopeptidase domain 10

NCBI chr 9:70,586,133...70,687,511
Ensembl chr 9:70,586,279...70,687,511

G

cofilin 1, non-muscle

NCBI chr19:5,540,483...5,544,059
Ensembl chr19:5,540,483...5,545,229

G

delta like canonical Notch ligand 1

NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134

G

delta like canonical Notch ligand 3

NCBI chr 7:27,992,980...28,001,210
Ensembl chr 7:27,992,978...28,001,663

G

F-box and WD-40 domain protein 7

NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505

G

hes family bHLH transcription factor 7

NCBI chr11:69,009,778...69,014,880
Ensembl chr11:69,011,230...69,014,881

G

lysine demethylase and nuclear receptor corepressor

NCBI chr14:70,789,644...70,810,988
Ensembl chr14:70,789,652...70,810,988

G

mesoderm posterior 2

PMID:9242490 PMID:11973278 PMID:17306789

NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187

G

paired box 3

NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771

Term paths to the root

Path 1
Term	Annotations
mammalian phenotype	16879
embryo phenotype	2423
abnormal embryo morphology	1849
abnormal embryonic tissue morphology	1265
abnormal somite development	274
abnormal somite border morphology	9

paths to the root