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ONTOLOGY REPORT - ANNOTATIONS

Term:spliceosomal tri-snRNP complex
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Accession:GO:0097526 term browser browse the term
Definition:A spliceosomal snRNP complex that is formed by the association of the U4/U6 (or U4atac/U6atac) snRNP with the U5 snRNP.


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spliceosomal tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC112438910 small nuclear ribonucleoprotein G-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:92,387,747...92,388,314 JBrowse link
G LOC117976953 small nuclear ribonucleoprotein G-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 1:180,958,983...180,959,816 JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:17,785,580...17,801,866
Ensembl chr19:18,757,390...18,773,812 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:1,330,469...1,337,610
Ensembl chr19:2,302,280...2,313,255 		JBrowse link
G PRPF31 pre-mRNA processing factor 31 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:51,048,133...51,064,394
Ensembl chr19:59,891,070...59,907,159 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of IEA TreeGrafter GO_REF:0000118 NCBI chr18:14,851,041...14,869,042
Ensembl chr18:18,488,929...18,506,284 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of IEA TreeGrafter GO_REF:0000118 NCBI chr22:5,361,886...5,378,465
Ensembl chr22:22,227,328...22,246,676 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:70,335,547...70,347,970
Ensembl chr2A:71,451,225...71,463,884 		JBrowse link
U4/U6 x U5 tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD2BP2 CD2 cytoplasmic tail binding protein 2 NOT|part_of ISO (PMID:15840814) BHF-UCL PMID:15840814 NCBI chr16:24,614,365...24,618,965
Ensembl chr16:30,723,277...30,727,888 		JBrowse link
G DDX23 DEAD-box helicase 23 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr12:39,896,354...39,917,195
Ensembl chr12:40,774,975...40,796,466 		JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr17:12,423,198...12,472,462
Ensembl chr17:12,595,715...12,644,147 		JBrowse link
G LOC100974064 small nuclear ribonucleoprotein E part_of IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:67,731,954...67,732,434
Ensembl chr 1:183,755,392...183,764,937 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:31,458,514...31,468,126
Ensembl chr 6:32,344,669...32,354,631 		JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal
UniProt		 PMID:30975767 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:14,097,035...14,165,942
Ensembl chr 3:14,437,497...14,456,726 		JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 ISO (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr19:17,785,580...17,801,866
Ensembl chr19:18,757,390...18,773,812 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
TreeGrafter		 PMID:30975767 GO_REF:0000118 NCBI chr 7:33,094,545...33,104,489 JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:138,514,194...138,528,575
Ensembl chr 4:150,171,648...150,185,947 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr19:1,330,469...1,337,610
Ensembl chr19:2,302,280...2,313,255 		JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated part_of
located_in		 IEA
ISO		 (PMID:30975767) UniProt
TreeGrafter
ComplexPortal
InterPro		 PMID:30975767 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 7:110,150,584...110,160,864 JBrowse link
G PPIH peptidylprolyl isomerase H part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:41,958,260...41,981,598
Ensembl chr 1:43,336,039...43,353,898 		JBrowse link
G PRPF18 pre-mRNA processing factor 18 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr10:13,584,517...13,628,389
Ensembl chr10:13,915,943...13,959,830 		JBrowse link
G PRPF3 pre-mRNA processing factor 3 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:125,666,604...125,698,591
Ensembl chr 1:129,320,605...129,348,214 		JBrowse link
G PRPF31 pre-mRNA processing factor 31 part_of
located_in		 IEA
ISO		 (PMID:30975767) InterPro
ComplexPortal
Ensembl		 PMID:30975767 GO_REF:0000002 GO_REF:0000107 NCBI chr19:51,048,133...51,064,394
Ensembl chr19:59,891,070...59,907,159 		JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:84,373,457...84,390,622
Ensembl chr 9:112,745,455...112,763,725 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 Ensembl chr20:61,899,076...61,948,088 JBrowse link
G PRPF8 pre-mRNA processing factor 8 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr17:1,635,991...1,669,703
Ensembl chr17:1,532,579...1,565,254 		JBrowse link
G RBM42 RNA binding motif protein 42 located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
Ensembl		 PMID:30975767 GO_REF:0000107 NCBI chr19:32,559,215...32,567,899
Ensembl chr19:41,294,818...41,303,817 		JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of
located_in		 IEA
ISO		 (PMID:30975767) InterPro
TreeGrafter
Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:61,326,262...61,343,475
Ensembl chr11:64,654,470...64,670,720 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein NOT|located_in ISO (PMID:12032085) UniProt PMID:12032085 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091 		JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr2A:103,010,083...103,040,958
Ensembl chr2A:97,197,137...97,228,511 		JBrowse link
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 located_in ISO (PMID:30975767) ComplexPortal PMID:30975767 NCBI chr2A:69,936,640...69,947,971
Ensembl chr2A:71,054,108...71,065,343 		JBrowse link
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
Ensembl		 PMID:30975767 GO_REF:0000107 NCBI chr 1:30,539,536...30,576,753
Ensembl chr 1:31,559,860...31,597,076 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
Ensembl		 PMID:30975767 GO_REF:0000107 NCBI chr19:37,795,139...37,809,265
Ensembl chr19:46,302,198...46,316,593 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal
TreeGrafter		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr20:2,571,393...2,580,642
Ensembl chr20:2,335,499...2,344,763 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr18:14,851,041...14,869,042
Ensembl chr18:18,488,929...18,506,284 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
TreeGrafter
Ensembl		 PMID:30975767 GO_REF:0000107 GO_REF:0000118 NCBI chr19:42,692,963...42,697,512
Ensembl chr19:51,230,822...51,235,661 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr22:5,361,886...5,378,465
Ensembl chr22:22,227,328...22,246,676 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 IEA
ISO		 (PMID:30975767) UniProt
TreeGrafter
Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:179,466,263...179,474,779
Ensembl chr 1:183,755,392...183,764,937 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of
located_in		 ISO (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr12:93,452,446...93,459,691
Ensembl chr12:96,841,638...96,886,039 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of
located_in		 ISO (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr2A:70,335,547...70,347,970
Ensembl chr2A:71,451,225...71,463,884 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of IEA TreeGrafter GO_REF:0000118 NCBI chr15:4,970,013...5,124,478
Ensembl chr15:22,347,242...22,371,062 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 located_in
part_of		 ISO
IEA		 (PMID:30975767) ComplexPortal
TreeGrafter
UniProt
Ensembl		 PMID:30975767 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr22:22,567,285...22,582,257
Ensembl chr22:40,653,338...40,669,706 		JBrowse link
G TXNL4A thioredoxin like 4A part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
TreeGrafter
ComplexPortal
InterPro
UniProt		 PMID:30975767 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr18:73,618,302...73,679,603
Ensembl chr18:76,937,460...76,952,428 		JBrowse link
G TXNL4B thioredoxin like 4B part_of IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr16:52,890,600...52,988,559
Ensembl chr16:71,946,172...71,954,951 		JBrowse link
G USP39 ubiquitin specific peptidase 39 part_of
located_in		 IEA
ISO		 (PMID:30975767) Ensembl
ComplexPortal		 PMID:30975767 GO_REF:0000107 NCBI chr2A:85,655,633...85,701,775
Ensembl chr2A:87,215,366...87,251,931 		JBrowse link
G ZMAT2 zinc finger matrin-type 2 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 5:136,065,016...136,071,333
Ensembl chr 5:142,180,981...142,187,292 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5908
      nuclear protein-containing complex 1236
        small nuclear ribonucleoprotein complex 71
          spliceosomal snRNP complex 64
            spliceosomal tri-snRNP complex 40
              U4/U6 x U5 tri-snRNP complex 38
              U4atac/U6atac x U5 tri-snRNP complex 0
Path 2
Term Annotations click to browse term
  cellular_component 17180
    cellular anatomical entity 16967
      intracellular anatomical structure 13629
        intracellular organelle 12077
          intracellular membrane-bounded organelle 10862
            nucleus 6800
              nuclear protein-containing complex 1236
                small nuclear ribonucleoprotein complex 71
                  spliceosomal snRNP complex 64
                    spliceosomal tri-snRNP complex 40
                      U4/U6 x U5 tri-snRNP complex 38
                      U4atac/U6atac x U5 tri-snRNP complex 0
paths to the root