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ONTOLOGY REPORT - ANNOTATIONS

Term:pyridoxal phosphate biosynthetic process
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Accession:GO:0042823 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 biosynthesis;   active vitamin B6 biosynthetic process;   pyridoxal phosphate anabolism;   pyridoxal phosphate biosynthesis;   pyridoxal phosphate formation;   pyridoxal phosphate synthesis
 xref: MetaCyc:PWY0-845


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pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12824491)
(MGI:7489789|PMID:9601034)
GO_REF:0000033		 RGD
GO_Central		 PMID:9601034 PMID:12824491 GO_REF:0000033 MGI:7489789 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110 		JBrowse link
G Pdxkl1 pyridoxal kinase like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:10,162,934...10,192,572
Ensembl chr20:10,164,099...10,192,739 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      biosynthetic process 8172
        organophosphate biosynthetic process 538
          pyridoxal phosphate biosynthetic process 3
            'de novo' pyridoxal 5'-phosphate biosynthetic process 0
            pyridoxal 5'-phosphate salvage + 2
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11455
      small molecule metabolic process 1878
        vitamin metabolic process 100
          water-soluble vitamin metabolic process 53
            vitamin B6 metabolic process 5
              pyridoxal phosphate metabolic process 5
                pyridoxal phosphate biosynthetic process 3
                  'de novo' pyridoxal 5'-phosphate biosynthetic process 0
                  pyridoxal 5'-phosphate salvage + 2
paths to the root