Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:water-soluble vitamin metabolic process
go back to main search page
Accession:GO:0006767 term browser browse the term
Definition:The chemical reactions and pathways involving any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin metabolism

show annotations for term's descendants           Sort by:
 
biotin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btd biotinidase ISO
IBA		 MGI:4888510 (MGI:4888153|PMID:21051254)
PMID:21873635		 RGD PMID:21051254, PMID:21873635 MGI:4888153, RGD:13792537 NCBI chr16:7,758,192...7,791,301
Ensembl chr16:7,758,996...7,791,243 		JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin IMP RGD PMID:14576052 RGD:8554807 NCBI chr17:80,584,921...80,807,181
Ensembl chr17:80,584,878...80,807,243 		JBrowse link
cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd4 ATP binding cassette subfamily D member 4 ISO (PMID:22922874) RGD PMID:22922874 NCBI chr 6:108,315,026...108,329,550
Ensembl chr 6:108,315,035...108,329,464 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase TAS RGD PMID:3994693 RGD:5135263 NCBI chr 9:78,862,013...78,882,061
Ensembl chr 9:78,862,013...78,882,060 		JBrowse link
G Cblif cobalamin binding intrinsic factor IDA RGD PMID:14166172 RGD:1624368 NCBI chr 1:228,118,048...228,132,296
Ensembl chr 1:228,118,048...228,132,404 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase TAS RGD PMID:3994693 RGD:5135263 NCBI chr11:31,780,477...31,805,728
Ensembl chr11:31,780,487...31,805,728 		JBrowse link
G Mmachc metabolism of cobalamin associated C ISO
IBA		 (PMID:19700356), (PMID:22642810), (PMID:23825108)
PMID:21873635		 RGD PMID:19700356 PMID:22642810 PMID:23825108, PMID:21873635 RGD:13792537 NCBI chr 5:135,555,587...135,561,723
Ensembl chr 5:135,555,565...135,561,914 		JBrowse link
G Mmadhc metabolism of cobalamin associated D IEA
ISS
ISO		 GO_REF:0000002
GO_REF:0000024
(PMID:24722857)		 InterPro
UniProt
RGD		 PMID:24722857 GO_REF:0000002 GO_REF:0000024 NCBI chr 3:35,783,511...35,801,474
Ensembl chr 3:35,783,623...35,801,614 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO
IEA		 (PMID:23825108)
GO_REF:0000107		 RGD
Ensembl		 PMID:23825108 GO_REF:0000107 NCBI chr17:66,210,444...66,295,014
Ensembl chr17:66,210,461...66,295,014 		JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase ISO (PMID:12764149) RGD PMID:12764149 NCBI chr 8:96,564,877...96,614,386
Ensembl chr 8:96,564,877...96,614,348 		JBrowse link
G Pm20d2 peptidase M20 domain containing 2 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:48,416,005...48,437,054
Ensembl chr 5:48,420,302...48,436,531 		JBrowse link
folic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase IDA
IBA		 PMID:20424322
PMID:21873635		 BHF-UCL
GO_Central		 PMID:20424322, PMID:21873635 RGD:10054082, RGD:13792537 NCBI chr 2:21,931,887...21,958,927
Ensembl chr 2:21,931,493...21,962,453 		JBrowse link
G Folr1 folate receptor alpha ISO MGI:2383986 (MGI:2669340|PMID:12854656) RGD PMID:12854656 MGI:2669340 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592 		JBrowse link
G Gnmt glycine N-methyltransferase TAS RGD PMID:12054489 RGD:728472 NCBI chr 9:16,565,274...16,568,626
Ensembl chr 9:16,565,225...16,568,627 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO
ISS		 (PMID:11466310)
(MGI:5512657|PMID:24074862)
GO_REF:0000024		 RGD
UniProt		 PMID:11466310 PMID:24074862 GO_REF:0000024 MGI:5512657 NCBI chr 1:37,743,089...37,774,485
Ensembl chr 1:37,743,147...37,774,015 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO
IBA		 (PMID:11278996)
PMID:21873635		 RGD PMID:11278996, PMID:21873635 RGD:13792537 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 IMP
ISO		 PMID:22820017
(MGI:3588122|PMID:15769935), (MGI:4834110|PMID:20410296)		 RGD PMID:15769935 PMID:20410296, PMID:22820017 MGI:3588122 MGI:4834110, RGD:13825440 NCBI chr 5:135,482,068...135,498,693
Ensembl chr 5:135,482,068...135,498,822 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:267,607,437...267,617,387
Ensembl chr 1:267,607,418...267,617,387 		JBrowse link
G Gulo gulonolactone (L-) oxidase IEA
ISS		 GO_REF:0000107
GO_REF:0000024		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:42,671,206...42,693,711
Ensembl chr15:42,671,203...42,693,694 		JBrowse link
G Rgn regucalcin ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:5486063|PMID:23349732)		 UniProt
RGD		 PMID:23349732, PMID:21873635 GO_REF:0000024 MGI:5486063, RGD:13792537 NCBI chr  X:1,833,484...1,848,904
Ensembl chr  X:1,833,492...1,848,904 		JBrowse link
L-ascorbic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gclc glutamate-cysteine ligase, catalytic subunit ISO MGI:2429419 (MGI:1928560|PMID:11118286) RGD PMID:11118286 MGI:1928560 NCBI chr 8:85,059,051...85,097,471
Ensembl chr 8:85,059,051...85,097,468 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:11511179)		 Ensembl
UniProt
RGD		 PMID:11511179 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:267,607,437...267,617,387
Ensembl chr 1:267,607,418...267,617,387 		JBrowse link
G Gsto2 glutathione S-transferase omega 2 ISO
ISS		 (PMID:15970797)
GO_REF:0000024		 RGD
UniProt		 PMID:15970797 GO_REF:0000024 NCBI chr 1:267,617,517...267,640,455
Ensembl chr 1:271,229,036...271,243,517
Ensembl chr 1:271,229,036...271,243,517 		JBrowse link
G LOC103690044 glutathione S-transferase omega-2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:271,228,018...271,243,517
Ensembl chr 1:271,229,036...271,243,517 		JBrowse link
G Mir125a microRNA 125a IDA RGD PMID:27085842 RGD:26884454 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911 		JBrowse link
G Slc23a2 solute carrier family 23 member 2 IMP
IBA		 PMID:21873635 RGD
GO_Central		 PMID:10331392, PMID:21873635 RGD:634186, RGD:13792537 NCBI chr 3:124,632,491...124,842,225
Ensembl chr 3:124,632,492...124,724,252 		JBrowse link
pantothenate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vnn1 vanin 1 ISO
IBA		 (PMID:11491533), (PMID:25478849)
PMID:21873635		 RGD PMID:11491533 PMID:25478849, PMID:21873635 RGD:13792537 NCBI chr 1:22,614,832...22,625,134
Ensembl chr 1:22,614,783...22,625,204 		JBrowse link
G Vnn3 vanin 3 ISO
IBA		 (MGI:2149227|PMID:11491533)
PMID:21873635		 RGD PMID:11491533, PMID:21873635 MGI:2149227, RGD:13792537 NCBI chr 1:22,649,114...22,661,376
Ensembl chr 1:22,649,081...22,661,377 		JBrowse link
positive regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase ISO (MGI:5926841|PMID:29056341) RGD PMID:29056341 MGI:5926841 NCBI chr15:108,608,203...108,838,222
Ensembl chr15:108,608,204...108,838,235 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IEA
IBA		 GO_REF:0000002
PMID:21873635		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391 		JBrowse link
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,883,952...10,912,870
Ensembl chr20:10,889,573...10,912,769 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,930,651...10,952,194
Ensembl chr20:10,930,518...10,952,391 		JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase ISO
IBA		 (PMID:12824491)
PMID:21873635		 RGD PMID:12824491, PMID:21873635 RGD:13792537 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190 		JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase ISS
ISO
IEA		 GO_REF:0000024
(MGI:5545857|PMID:24338473)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24338473 GO_REF:0000024 GO_REF:0000107 MGI:5545857 NCBI chr 7:120,140,460...120,145,908
Ensembl chr 7:120,140,460...120,145,908 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxamine 5'-phosphate oxidase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:84,874,926...84,881,190
Ensembl chr10:84,874,927...84,881,190 		JBrowse link
regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase ISO
IBA
ISS		 (PMID:29056341)
PMID:21873635
(MGI:5926841|PMID:29056341)
GO_REF:0000024		 RGD
UniProt		 PMID:29056341, PMID:21873635 GO_REF:0000024 MGI:5926841, RGD:13792537 NCBI chr15:108,608,203...108,838,222
Ensembl chr15:108,608,204...108,838,235 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:236,494,221...236,501,733
Ensembl chr 1:236,494,221...236,501,733 		JBrowse link
riboflavin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:236,494,221...236,501,733
Ensembl chr 1:236,494,221...236,501,733 		JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp3 acid phosphatase 3 IEA
ISO		 GO_REF:0000107
(MGI:3849266|PMID:18940592)		 Ensembl
RGD		 PMID:18940592 GO_REF:0000107 MGI:3849266 NCBI chr 8:112,838,574...112,884,062
Ensembl chr 8:112,834,707...112,884,077 		JBrowse link
G Thtpa thiamine triphosphatase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:33,755,157...33,759,117
Ensembl chr15:33,755,478...33,759,115 		JBrowse link
G Tpk1 thiamin pyrophosphokinase 1 ISO (MGI:1350425|PMID:10567383) RGD PMID:10567383 MGI:1350425 NCBI chr 4:72,792,252...73,174,179
Ensembl chr 4:72,792,252...73,174,179 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      small molecule metabolic process 1811
        vitamin metabolic process 82
          water-soluble vitamin metabolic process 37
            L-ascorbic acid metabolic process + 9
            biotin metabolic process + 1
            cobalamin metabolic process + 9
            folic acid metabolic process + 8
            nicotinamide metabolic process + 0
            pantothenate metabolic process + 2
            riboflavin metabolic process + 1
            thiamine-containing compound metabolic process + 3
            vitamin B6 metabolic process + 4
            water-soluble vitamin biosynthetic process + 8
            water-soluble vitamin catabolic process + 4
paths to the root