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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate metabolic process
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Accession:GO:0042822 term browser browse the term
Definition:The chemical reactions and pathways involving pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 metabolic process;   active vitamin B6 metabolism;   pyridoxal phosphate metabolism



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pyridoxal phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO (MGI:76012|PMID:7550313) RGD PMID:7550313 MGI:76012 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Pdxk pyridoxal kinase involved_in ISO (PMID:31935373), (PMID:33318193) RGD PMID:31935373 PMID:33318193 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in ISO (PMID:31935373) RGD PMID:31935373 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
InterPro
TreeGrafter
GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110
JBrowse link
G Pdxkl1 pyridoxal kinase like 1 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr20:10,162,934...10,192,572
Ensembl chr20:10,164,099...10,192,739
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,210,276...10,232,314
Ensembl chr20:10,210,289...10,232,110
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:12824491)
GO_REF:0000033
(MGI:7489789|PMID:9601034)
RGD
GO_Central
PMID:9601034 PMID:12824491 GO_REF:0000033 MGI:7489789 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase involved_in IEA
ISO
ISS
GO_REF:0000107
MGI:6367625 (MGI:5545856|PMID:24338687), (MGI:5545857|PMID:24338473), (MGI:6695679|PMID:25783190), (PMID:30327125)
(PMID:14522954), (PMID:8132548)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 More... GO_REF:0000024 GO_REF:0000107 MGI:5545856 MGI:5545857 MGI:6695679 NCBI chr 7:110,472,515...110,477,963
Ensembl chr 7:110,472,515...110,477,963
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        organophosphate metabolic process 1062
          pyridoxal phosphate metabolic process 5
            pyridoxal phosphate biosynthetic process + 3
            pyridoxal phosphate catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      small molecule metabolic process 1938
        vitamin metabolic process 102
          water-soluble vitamin metabolic process 54
            vitamin B6 metabolic process 5
              pyridoxal phosphate metabolic process 5
                pyridoxal phosphate biosynthetic process + 3
                pyridoxal phosphate catabolic process 1
paths to the root