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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridoxal phosphate metabolic process
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Accession:GO:0042822 term browser browse the term
Definition:The chemical reactions and pathways involving pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Synonyms:exact_synonym: active vitamin B6 metabolic process;   active vitamin B6 metabolism;   pyridoxal phosphate metabolism



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pyridoxal phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO
IEA
(MGI:76012|PMID:7550313)
GO_REF:0000107
RGD
Ensembl
PMID:7550313 GO_REF:0000107 MGI:76012 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110
JBrowse link
G RGD1566085 similar to pyridoxal (pyridoxine, vitamin B6) kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:10,162,934...10,192,610
Ensembl chr20:10,164,099...10,192,739
JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in IBA
ISO
PMID:21873635
(PMID:12824491)
RGD PMID:12824491 PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5545856|PMID:24338687), (MGI:5545857|PMID:24338473), (MGI:6695679|PMID:25783190)
(PMID:14522954), (PMID:8132548)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 GO_REF:0000024 GO_REF:0000107 MGI:5545856 MGI:5545857 MGI:6695679 NCBI chr 7:110,472,515...110,477,963
Ensembl chr 7:110,472,515...110,477,963
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    metabolic process 12042
      cellular metabolic process 10922
        cellular aldehyde metabolic process 70
          pyridoxal phosphate metabolic process 5
            pyridoxal phosphate biosynthetic process + 3
            pyridoxal phosphate catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 19834
    metabolic process 12042
      nitrogen compound metabolic process 10185
        cellular nitrogen compound metabolic process 6716
          pyridine-containing compound metabolic process 36
            vitamin B6 metabolic process 5
              pyridoxal phosphate metabolic process 5
                pyridoxal phosphate biosynthetic process + 3
                pyridoxal phosphate catabolic process 1
paths to the root