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ONTOLOGY REPORT - ANNOTATIONS

Term:snoRNA binding
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Accession:GO:0030515 term browser browse the term
Definition:Binding to a small nucleolar RNA.


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snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BYSL bystin like enables IBA GO_Central GO_REF:0000033 NCBI chr 6:41,908,759...41,933,046
Ensembl chr 6:41,921,229...41,933,050 		JBrowse link
G DDX21 DExD-box helicase 21 enables IDA (PMID:25470060) UniProt PMID:25470060 NCBI chr10:68,956,170...68,985,068
Ensembl chr10:68,956,135...68,985,068 		JBrowse link
G HEATR1 HEAT repeat containing 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:236,549,005...236,604,516
Ensembl chr 1:236,549,005...236,604,516 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 enables IBA GO_Central GO_REF:0000033 NCBI chr15:75,639,093...75,640,224
Ensembl chr15:75,639,085...75,648,706 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:130,342,897...130,347,967
Ensembl chr 2:130,342,877...130,347,967 		JBrowse link
G NOP10 NOP10 ribonucleoprotein enables IEA InterPro GO_REF:0000002 NCBI chr15:34,341,719...34,343,136
Ensembl chr15:34,339,159...34,343,180 		JBrowse link
G NOP14 NOP14 nucleolar protein enables ISS UniProt GO_REF:0000024 NCBI chr 4:2,937,936...2,963,406
Ensembl chr 4:2,937,933...2,963,406 		JBrowse link
G NOP56 NOP56 ribonucleoprotein enables IEA
IBA
IDA		 (PMID:17636026) InterPro
GO_Central
BHF-UCL		 PMID:17636026 GO_REF:0000002 GO_REF:0000033 NCBI chr20:2,652,632...2,658,393
Ensembl chr20:2,652,593...2,658,393 		JBrowse link
G NOP58 NOP58 ribonucleoprotein enables IDA
IEA
IBA		 (PMID:17636026) BHF-UCL
InterPro
GO_Central		 PMID:17636026 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:202,265,763...202,303,661
Ensembl chr 2:202,265,736...202,303,661 		JBrowse link
G NUDT1 nudix hydrolase 1 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:2,242,226...2,251,145
Ensembl chr 7:2,242,226...2,251,146 		JBrowse link
G NUDT16 nudix hydrolase 16 enables IDA
IBA		 (PMID:18820299), (PMID:21337011) UniProt
GO_Central		 PMID:18820299 PMID:21337011 GO_REF:0000033 NCBI chr 3:131,381,671...131,388,830
Ensembl chr 3:131,381,671...131,388,830 		JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 enables IDA
IBA		 (PMID:18820299), (PMID:21070968) UniProt
GO_Central		 PMID:18820299 PMID:21070968 GO_REF:0000033 NCBI chr16:4,693,562...4,695,859
Ensembl chr16:4,693,562...4,695,859 		JBrowse link
G NUDT4 nudix hydrolase 4 enables ISS UniProt GO_REF:0000024 NCBI chr12:93,377,925...93,408,146
Ensembl chr12:93,377,883...93,408,146 		JBrowse link
G NUDT5 nudix hydrolase 5 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:12,165,330...12,195,891
Ensembl chr10:12,165,330...12,195,891 		JBrowse link
G NUDT7 nudix hydrolase 7 enables IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260 		JBrowse link
G NUFIP1 nuclear FMR1 interacting protein 1 contributes_to IDA (PMID:17636026) BHF-UCL PMID:17636026 NCBI chr13:44,939,249...44,989,471
Ensembl chr13:44,939,249...44,989,471 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein enables IBA GO_Central GO_REF:0000033 NCBI chr 3:51,933,429...51,941,904
Ensembl chr 3:51,933,429...51,941,904 		JBrowse link
G SDE2 SDE2 telomere maintenance homolog enables IDA (PMID:34365507) UniProt PMID:34365507 NCBI chr 1:225,982,702...225,999,343
Ensembl chr 1:225,982,702...225,999,343 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 contributes_to IDA (PMID:17636026) BHF-UCL PMID:17636026 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504 		JBrowse link
G UTP6 UTP6 small subunit processome component enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr17:31,860,904...31,901,708
Ensembl chr17:31,860,904...31,901,708 		JBrowse link
G WDR3 WD repeat domain 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:117,929,739...117,966,543
Ensembl chr 1:117,929,720...117,966,543 		JBrowse link
box C/D sno(s)RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOLC1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 PMID:12446766 RGD:633420 RGD:633515 NCBI chr10:102,152,389...102,163,870
Ensembl chr10:102,152,176...102,163,871 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 enables IDA (PMID:11081632) GO_Central PMID:11081632 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504 		JBrowse link
box H/ACA snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 enables IPI (PMID:18082603) BHF-UCL PMID:18082603 NCBI chr  X:154,762,864...154,777,689
Ensembl chr  X:154,762,742...154,777,689 		JBrowse link
G GAR1 GAR1 ribonucleoprotein enables IPI
IBA		 (PMID:10757788) BHF-UCL
GO_Central		 PMID:10757788 GO_REF:0000033 NCBI chr 4:109,815,510...109,824,737
Ensembl chr 4:109,815,510...109,824,740 		JBrowse link
G NHP2 NHP2 ribonucleoprotein enables IPI
IBA		 (PMID:18082603) BHF-UCL
GO_Central		 PMID:18082603 GO_REF:0000033 NCBI chr 5:178,149,463...178,153,885
Ensembl chr 5:178,149,463...178,153,894 		JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 PMID:12446766 RGD:633420 RGD:633515 NCBI chr10:102,152,389...102,163,870
Ensembl chr10:102,152,176...102,163,871 		JBrowse link
G NOP10 NOP10 ribonucleoprotein enables IPI (PMID:18082603) BHF-UCL PMID:18082603 NCBI chr15:34,341,719...34,343,136
Ensembl chr15:34,339,159...34,343,180 		JBrowse link
U3 snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMS1 BMS1 ribosome biogenesis factor enables IBA GO_Central GO_REF:0000033 NCBI chr10:42,782,795...42,834,937
Ensembl chr10:42,782,795...42,834,937 		JBrowse link
G DHX37 DEAH-box helicase 37 enables IDA (PMID:30582406) UniProt PMID:30582406 NCBI chr12:124,946,826...124,989,131
Ensembl chr12:124,946,825...124,989,131 		JBrowse link
G ISG20 interferon stimulated exonuclease gene 20 enables IDA (PMID:16514659) UniProt PMID:16514659 NCBI chr15:88,635,632...88,656,483
Ensembl chr15:88,635,670...88,656,483 		JBrowse link
G NHP2 NHP2 ribonucleoprotein enables ISO
IEA		 RGD
Ensembl		 PMID:15044956 GO_REF:0000107 RGD:10766448 NCBI chr 5:178,149,463...178,153,885
Ensembl chr 5:178,149,463...178,153,894 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit enables IDA (PMID:32103174) UniProt PMID:32103174 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein enables
contributes_to		 IDA
IEA		 (PMID:26867678)
(PMID:9418896)		 UniProt
GO_Central
InterPro		 PMID:9418896 PMID:26867678 GO_REF:0000002 NCBI chr 3:51,933,429...51,941,904
Ensembl chr 3:51,933,429...51,941,904 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 enables IDA (PMID:11081632) GO_Central PMID:11081632 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504 		JBrowse link
G TBL3 transducin beta like 3 enables IBA GO_Central GO_REF:0000033 NCBI chr16:1,972,053...1,982,929
Ensembl chr16:1,972,053...1,982,929 		JBrowse link
G TSR1 TSR1 ribosome maturation factor enables IBA GO_Central GO_REF:0000033 NCBI chr17:2,322,396...2,336,457
Ensembl chr17:2,322,396...2,336,657 		JBrowse link
G UTP25 UTP25 small subunit processome component enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:209,827,972...209,857,565
Ensembl chr 1:209,827,972...209,857,565 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 enables IDA (PMID:32103174) UniProt PMID:32103174 NCBI chr 2:216,109,348...216,206,293
Ensembl chr 2:216,107,464...216,206,303 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19547
    binding 18031
      organic cyclic compound binding 6761
        nucleic acid binding 4628
          RNA binding 2152
            snoRNA binding 33
              U3 snoRNA binding 11
              box C/D sno(s)RNA binding 2
              box H/ACA snoRNA binding 5
paths to the root