NUDT16 (nudix hydrolase 16) - Rat Genome Database

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Gene: NUDT16 (nudix hydrolase 16) Homo sapiens
Analyze
Symbol: NUDT16
Name: nudix hydrolase 16
RGD ID: 1347227
HGNC Page HGNC:26442
Description: Enables several functions, including RNA binding activity; metal ion binding activity; and pyrophosphatase activity. Involved in RNA metabolic process and positive regulation of cell cycle process. Located in cytoplasm; nucleolus; and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ31265; FLJ34034; FLJ36248; IDP phosphatase; IDPase; inosine diphosphate phosphatase; m7GpppN-mRNA hydrolase; nucleoside diphosphate-linked moiety X motif 16; nudix (nucleoside diphosphate linked moiety X)-type motif 16; nudix motif 16; testicular tissue protein Li 129; U8 snoRNA-binding protein H29K; U8 snoRNA-decapping enzyme
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Related Pseudogenes: NUDT16L2P  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,381,671 - 131,388,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,381,671 - 131,388,830 (+)EnsemblGRCh38hg38GRCh38
GRCh373131,100,515 - 131,107,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,583,397 - 132,587,619 (+)NCBINCBI36Build 36hg18NCBI36
Build 343132,583,404 - 132,587,627NCBI
Celera3129,526,187 - 129,533,346 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,485,333 - 128,492,492 (+)NCBIHuRef
CHM1_13131,064,106 - 131,071,265 (+)NCBICHM1_1
T2T-CHM13v2.03134,125,463 - 134,132,622 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
4. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:14702039   PMID:15053875   PMID:15342556   PMID:15489334   PMID:16712791   PMID:17567574   PMID:18607096   PMID:18820299   PMID:20081199   PMID:20385596   PMID:21070968   PMID:21337011  
PMID:21630459   PMID:21873635   PMID:26038567   PMID:26121039   PMID:27432908   PMID:28344317   PMID:28514442   PMID:29483298   PMID:31911551   PMID:32432673   PMID:33001583   PMID:33947817  
PMID:33961781   PMID:34133714   PMID:35174610   PMID:35545034   PMID:36215168   PMID:38324469  


Genomics

Comparative Map Data
NUDT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,381,671 - 131,388,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,381,671 - 131,388,830 (+)EnsemblGRCh38hg38GRCh38
GRCh373131,100,515 - 131,107,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,583,397 - 132,587,619 (+)NCBINCBI36Build 36hg18NCBI36
Build 343132,583,404 - 132,587,627NCBI
Celera3129,526,187 - 129,533,346 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,485,333 - 128,492,492 (+)NCBIHuRef
CHM1_13131,064,106 - 131,071,265 (+)NCBICHM1_1
T2T-CHM13v2.03134,125,463 - 134,132,622 (+)NCBIT2T-CHM13v2.0
Nudt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,006,531 - 105,010,332 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,006,102 - 105,009,023 (-)EnsemblGRCm39 Ensembl
GRCm389105,129,332 - 105,133,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,128,903 - 105,131,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,031,668 - 105,034,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369104,987,773 - 104,989,905 (-)NCBIMGSCv36mm8
Celera9104,714,940 - 104,717,404 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Nudt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,618,706 - 114,620,761 (-)NCBIGRCr8
mRatBN7.28105,739,927 - 105,741,982 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,739,623 - 105,741,998 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,391,367 - 111,393,434 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,590,625 - 109,592,692 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,433,297 - 107,435,364 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,673,069 - 113,675,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,672,758 - 113,675,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,059,242 - 113,061,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,199,789 - 110,201,844 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18110,219,857 - 110,221,366 (-)NCBI
Celera8105,096,287 - 105,098,342 (-)NCBICelera
Cytogenetic Map8q32NCBI
Nudt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555017,083,068 - 7,085,505 (-)NCBIChiLan1.0ChiLan1.0
NUDT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22129,340,543 - 129,344,991 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13129,345,269 - 129,352,341 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03128,466,119 - 128,473,186 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,788,354 - 135,795,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,788,354 - 135,790,038 (+)Ensemblpanpan1.1panPan2
NUDT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,498,730 - 28,500,998 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,498,652 - 28,499,998 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,472,997 - 28,475,571 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02329,005,996 - 29,008,575 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2329,006,001 - 29,008,575 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,701,498 - 28,704,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,763,058 - 28,765,630 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02329,012,791 - 29,015,352 (+)NCBIUU_Cfam_GSD_1.0
LOC101965734
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560268,064,762 - 68,067,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,825,189 - 4,826,886 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,825,277 - 4,827,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,125,183 - 1,128,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,125,180 - 1,128,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUDT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11558,847,418 - 58,849,133 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1558,847,560 - 58,849,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604131,857,701 - 31,864,774 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in NUDT16
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q22.1(chr3:131273462-131383846)x3 copy number gain See cases [RCV000053641] Chr3:131273462..131383846 [GRCh38]
Chr3:130992306..131102690 [GRCh37]
Chr3:132474996..132585380 [NCBI36]
Chr3:3q22.1
benign
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q22.1-24(chr3:129817243-143381624)x1 copy number loss See cases [RCV000136558] Chr3:129817243..143381624 [GRCh38]
Chr3:129536086..143100466 [GRCh37]
Chr3:131018776..144583156 [NCBI36]
Chr3:3q22.1-24
pathogenic
GRCh38/hg38 3q22.1-23(chr3:130401265-139005019)x1 copy number loss See cases [RCV000139240] Chr3:130401265..139005019 [GRCh38]
Chr3:130120109..138723861 [GRCh37]
Chr3:131602799..140206551 [NCBI36]
Chr3:3q22.1-23
pathogenic
GRCh38/hg38 3q22.1-23(chr3:129817243-141425155)x1 copy number loss See cases [RCV000140995] Chr3:129817243..141425155 [GRCh38]
Chr3:129536086..141143997 [GRCh37]
Chr3:131018776..142626687 [NCBI36]
Chr3:3q22.1-23
pathogenic
GRCh38/hg38 3q21.3-23(chr3:126106779-140918089)x3 copy number gain See cases [RCV000142010] Chr3:126106779..140918089 [GRCh38]
Chr3:125825622..140636931 [GRCh37]
Chr3:127308312..142119621 [NCBI36]
Chr3:3q21.3-23
uncertain significance
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh38/hg38 3q21.3-22.1(chr3:127607945-133566661)x1 copy number loss See cases [RCV000142787] Chr3:127607945..133566661 [GRCh38]
Chr3:127326788..133285505 [GRCh37]
Chr3:128809478..134768195 [NCBI36]
Chr3:3q21.3-22.1
likely pathogenic
NM_152395.3(NUDT16):c.277A>C (p.Thr93Pro) single nucleotide variant not specified [RCV004319275] Chr3:131382184 [GRCh38]
Chr3:131101028 [GRCh37]
Chr3:3q22.1
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_152395.3(NUDT16):c.408+179G>A single nucleotide variant not provided [RCV000949267] Chr3:131382494 [GRCh38]
Chr3:131101338 [GRCh37]
Chr3:3q22.1
benign
NM_152395.3(NUDT16):c.205C>G (p.Leu69Val) single nucleotide variant not provided [RCV000964840] Chr3:131382112 [GRCh38]
Chr3:131100956 [GRCh37]
Chr3:3q22.1
benign
NM_152395.3(NUDT16):c.588G>A (p.Ter196=) single nucleotide variant not specified [RCV004322294] Chr3:131383341 [GRCh38]
Chr3:131102185 [GRCh37]
Chr3:3q22.1
likely benign
Single allele deletion Deafness-lymphedema-leukemia syndrome [RCV001541925] Chr3:127966423..136853218 [GRCh37]
Chr3:3q21.3-22.3
pathogenic
GRCh37/hg19 3q13.31-26.31(chr3:116620308-172042292)x3 copy number gain not provided [RCV002472621] Chr3:116620308..172042292 [GRCh37]
Chr3:3q13.31-26.31
pathogenic
NC_000003.11:g.(?_120365818)_(133465047_?)del deletion Alkaptonuria [RCV002035459] Chr3:120365818..133465047 [GRCh37]
Chr3:3q13.33-22.1
pathogenic
NM_152395.3(NUDT16):c.571A>T (p.Ile191Phe) single nucleotide variant not specified [RCV004134472] Chr3:131383324 [GRCh38]
Chr3:131102168 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+202C>T single nucleotide variant not specified [RCV004080716] Chr3:131382517 [GRCh38]
Chr3:131101361 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.37C>A (p.Leu13Met) single nucleotide variant not specified [RCV004099620] Chr3:131381841 [GRCh38]
Chr3:131100685 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.7G>A (p.Gly3Arg) single nucleotide variant not specified [RCV004167543] Chr3:131381811 [GRCh38]
Chr3:131100655 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.70C>G (p.His24Asp) single nucleotide variant not specified [RCV004277593] Chr3:131381874 [GRCh38]
Chr3:131100718 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+251T>C single nucleotide variant not provided [RCV004696529]|not specified [RCV004354139] Chr3:131382566 [GRCh38]
Chr3:131101410 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.263T>C (p.Phe88Ser) single nucleotide variant not specified [RCV004496170] Chr3:131382170 [GRCh38]
Chr3:131101014 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+218A>G single nucleotide variant not specified [RCV004496172] Chr3:131382533 [GRCh38]
Chr3:131101377 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.10G>A (p.Ala4Thr) single nucleotide variant not specified [RCV004496169] Chr3:131381814 [GRCh38]
Chr3:131100658 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.34G>A (p.Ala12Thr) single nucleotide variant not specified [RCV004496171] Chr3:131381838 [GRCh38]
Chr3:131100682 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.119C>T (p.Pro40Leu) single nucleotide variant not specified [RCV004638829] Chr3:131381923 [GRCh38]
Chr3:131100767 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.32A>G (p.Glu11Gly) single nucleotide variant not specified [RCV004652635] Chr3:131381836 [GRCh38]
Chr3:131100680 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+143G>T single nucleotide variant not specified [RCV004840713] Chr3:131382458 [GRCh38]
Chr3:131101302 [GRCh37]
Chr3:3q22.1
likely benign
NM_152395.3(NUDT16):c.558T>G (p.Ile186Met) single nucleotide variant not specified [RCV004840710] Chr3:131383311 [GRCh38]
Chr3:131102155 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.89C>G (p.Pro30Arg) single nucleotide variant not specified [RCV004832646] Chr3:131381893 [GRCh38]
Chr3:131100737 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+34A>G single nucleotide variant not specified [RCV004840712] Chr3:131382349 [GRCh38]
Chr3:131101193 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.316G>A (p.Val106Ile) single nucleotide variant not specified [RCV004840714] Chr3:131382223 [GRCh38]
Chr3:131101067 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.233G>A (p.Arg78His) single nucleotide variant not specified [RCV004840709] Chr3:131382140 [GRCh38]
Chr3:131100984 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.408+64C>G single nucleotide variant not specified [RCV004840711] Chr3:131382379 [GRCh38]
Chr3:131101223 [GRCh37]
Chr3:3q22.1
uncertain significance
NM_152395.3(NUDT16):c.340C>A (p.Arg114Ser) single nucleotide variant not specified [RCV004840715] Chr3:131382247 [GRCh38]
Chr3:131101091 [GRCh37]
Chr3:3q22.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7606
Count of miRNA genes:1146
Interacting mature miRNAs:1438
Transcripts:ENST00000359850, ENST00000502852, ENST00000521288, ENST00000537561
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597045812GWAS1141886_Hsoluble triggering receptor expressed on myeloid cells 2 measurement QTL GWAS1141886 (human)0.0000001soluble triggering receptor expressed on myeloid cells 2 measurement3131383737131383738Human

Markers in Region
RH79085  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,105,888 - 131,106,023UniSTSGRCh37
GRCh373131,090,534 - 131,090,671UniSTSGRCh37
Build 363132,573,224 - 132,573,361RGDNCBI36
Celera3129,531,560 - 129,531,695UniSTS
Celera3129,516,206 - 129,516,343RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,475,349 - 128,475,489UniSTS
HuRef3128,490,706 - 128,490,841UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
RH102345  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,107,383 - 131,107,524UniSTSGRCh37
Build 363132,590,073 - 132,590,214RGDNCBI36
Celera3129,533,055 - 129,533,196RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,492,201 - 128,492,342UniSTS
GeneMap99-GB4 RH Map3463.72UniSTS
RH48866  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,104,820 - 131,104,951UniSTSGRCh37
Build 363132,587,510 - 132,587,641RGDNCBI36
Celera3129,530,492 - 129,530,623RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,489,638 - 128,489,769UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
RH68746  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,105,356 - 131,105,494UniSTSGRCh37
Build 363132,588,046 - 132,588,184RGDNCBI36
Celera3129,531,028 - 129,531,166RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,490,174 - 128,490,312UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
SHGC-35112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,105,438 - 131,105,542UniSTSGRCh37
Build 363132,588,128 - 132,588,232RGDNCBI36
Celera3129,531,110 - 129,531,214RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,490,256 - 128,490,360UniSTS
Stanford-G3 RH Map36045.0UniSTS
GeneMap99-GB4 RH Map3462.39UniSTS
Whitehead-RH Map3585.7UniSTS
NCBI RH Map31159.8UniSTS
GeneMap99-G3 RH Map36515.0UniSTS
SHGC-77345  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,102,328 - 131,102,452UniSTSGRCh37
GRCh373131,082,492 - 131,082,617UniSTSGRCh37
Build 363132,565,182 - 132,565,307RGDNCBI36
Celera3129,508,164 - 129,508,289RGD
Celera3129,528,000 - 129,528,124UniSTS
Cytogenetic Map3q22.1UniSTS
HuRef3128,487,146 - 128,487,270UniSTS
TNG Radiation Hybrid Map375501.0UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
SHGC-77347  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373131,103,026 - 131,103,166UniSTSGRCh37
Build 363132,585,716 - 132,585,856RGDNCBI36
Celera3129,528,698 - 129,528,838RGD
Cytogenetic Map3q22.1UniSTS
HuRef3128,487,844 - 128,487,984UniSTS
TNG Radiation Hybrid Map375501.0UniSTS
GeneMap99-GB4 RH Map3463.09UniSTS
Whitehead-RH Map3593.4UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2249 4973 1726 2351 6 624 1931 465 2270 7290 6456 47 3732 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001171905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001171906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC010210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP199028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP219080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB121755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC343245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000502852   ⟹   ENSP00000422375
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,381,785 - 131,383,439 (+)Ensembl
Ensembl Acc Id: ENST00000521288   ⟹   ENSP00000429274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,381,774 - 131,388,830 (+)Ensembl
Ensembl Acc Id: ENST00000537561   ⟹   ENSP00000440230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3131,381,671 - 131,388,830 (+)Ensembl
RefSeq Acc Id: NM_001171905   ⟹   NP_001165376
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,381,671 - 131,388,808 (+)NCBI
GRCh373131,100,515 - 131,107,674 (+)RGD
Celera3129,526,187 - 129,533,346 (+)RGD
HuRef3128,485,333 - 128,492,492 (+)ENTREZGENE
CHM1_13131,064,106 - 131,071,265 (+)NCBI
T2T-CHM13v2.03134,125,463 - 134,132,600 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001171906   ⟹   NP_001165377
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,381,774 - 131,382,781 (+)NCBI
GRCh373131,100,515 - 131,107,674 (+)RGD
Celera3129,526,187 - 129,533,346 (+)RGD
HuRef3128,485,333 - 128,492,492 (+)ENTREZGENE
CHM1_13131,064,200 - 131,065,232 (+)NCBI
T2T-CHM13v2.03134,125,566 - 134,126,573 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152395   ⟹   NP_689608
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,381,774 - 131,388,830 (+)NCBI
GRCh373131,100,515 - 131,107,674 (+)RGD
Build 363132,583,397 - 132,587,619 (+)NCBI Archive
Celera3129,526,187 - 129,533,346 (+)RGD
HuRef3128,485,333 - 128,492,492 (+)ENTREZGENE
CHM1_13131,064,200 - 131,071,265 (+)NCBI
T2T-CHM13v2.03134,125,566 - 134,132,622 (+)NCBI
Sequence:
RefSeq Acc Id: NR_033268
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,381,774 - 131,388,830 (+)NCBI
GRCh373131,100,515 - 131,107,674 (+)RGD
Celera3129,526,187 - 129,533,346 (+)RGD
HuRef3128,485,333 - 128,492,492 (+)ENTREZGENE
CHM1_13131,064,216 - 131,071,265 (+)NCBI
T2T-CHM13v2.03134,125,566 - 134,132,622 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001165376   ⟸   NM_001171905
- Peptide Label: isoform 3
- UniProtKB: B4DIZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_689608   ⟸   NM_152395
- Peptide Label: isoform 2
- UniProtKB: F5GYJ1 (UniProtKB/Swiss-Prot),   E9PED4 (UniProtKB/Swiss-Prot),   B4E3B4 (UniProtKB/Swiss-Prot),   Q96N82 (UniProtKB/Swiss-Prot),   Q96DE0 (UniProtKB/Swiss-Prot),   A0A140VJQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001165377   ⟸   NM_001171906
- Peptide Label: isoform 1
- UniProtKB: Q96DE0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000422375   ⟸   ENST00000502852
Ensembl Acc Id: ENSP00000429274   ⟸   ENST00000521288
Ensembl Acc Id: ENSP00000440230   ⟸   ENST00000537561
Protein Domains
Nudix hydrolase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96DE0-F1-model_v2 AlphaFold Q96DE0 1-195 view protein structure

Promoters
RGD ID:6865680
Promoter ID:EPDNEW_H6005
Type:initiation region
Name:NUDT16_1
Description:nudix hydrolase 16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383131,381,794 - 131,381,854EPDNEW
RGD ID:6801396
Promoter ID:HG_KWN:46220
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_001171905,   NM_152395,   NR_033268,   UC003EOC.1,   UC003EOF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363132,582,901 - 132,583,401 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26442 AgrOrtholog
COSMIC NUDT16 COSMIC
Ensembl Genes ENSG00000198585 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000502852 ENTREZGENE
  ENST00000502852.1 UniProtKB/Swiss-Prot
  ENST00000521288 ENTREZGENE
  ENST00000521288.2 UniProtKB/Swiss-Prot
  ENST00000537561 ENTREZGENE
  ENST00000537561.5 UniProtKB/Swiss-Prot
Gene3D-CATH Nucleoside Triphosphate Pyrophosphohydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000198585 GTEx
HGNC ID HGNC:26442 ENTREZGENE
Human Proteome Map NUDT16 Human Proteome Map
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NudT16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:131870 UniProtKB/Swiss-Prot
NCBI Gene 131870 ENTREZGENE
OMIM 617381 OMIM
PANTHER NUDIX T16 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U8 SNORNA-DECAPPING ENZYME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nudt16-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134955224 PharmGKB
PROSITE NUDIX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Nudix UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A140VJQ3 ENTREZGENE, UniProtKB/TrEMBL
  B4DIZ6 ENTREZGENE, UniProtKB/TrEMBL
  B4E3B4 ENTREZGENE
  E9PED4 ENTREZGENE
  F5GYJ1 ENTREZGENE
  NUD16_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q96N82 ENTREZGENE
UniProt Secondary B4E3B4 UniProtKB/Swiss-Prot
  E9PED4 UniProtKB/Swiss-Prot
  F5GYJ1 UniProtKB/Swiss-Prot
  Q96N82 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 NUDT16  nudix hydrolase 16    nudix (nucleoside diphosphate linked moiety X)-type motif 16  Symbol and/or name change 5135510 APPROVED