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perichromatin fibrils - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:perichromatin fibrils
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Accession:GO:0005726 term browser browse the term
Definition:Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.

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perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:32,262,747...32,346,872
Ensembl chr14:31,908,566...31,990,400 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 located_in ISO
IEA		 (PMID:17267687)
GO_REF:0000107		 RGD
Ensembl		 PMID:17267687 GO_REF:0000107 NCBI chr 7:54,798,452...54,887,711
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Dhx9 DExH-box helicase 9 located_in ISO
IEA		 (PMID:10198287)
GO_REF:0000107		 RGD
Ensembl		 PMID:10198287 GO_REF:0000107 NCBI chr13:68,152,813...68,189,580
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in ISO
IEA		 (PMID:12941608)
GO_REF:0000107		 RGD
Ensembl		 PMID:12941608 GO_REF:0000107 NCBI chr15:57,838,864...57,869,597
Ensembl chr15:51,429,549...51,460,310 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 located_in ISO (PMID:10318760) RGD PMID:10318760 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IDA MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chr10:102,550,962...102,554,200
Ensembl chr10:102,052,314...102,055,338 		JBrowse link
G Tardbp TAR DNA binding protein IDA RGD PMID:19539030 RGD:5687141 NCBI chr 5:164,330,452...164,348,435
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
G Trim24 tripartite motif-containing 24 located_in ISO
IEA		 (PMID:10318760)
GO_REF:0000107		 RGD
Ensembl		 PMID:10318760 GO_REF:0000107 NCBI chr 4:67,534,240...67,659,014
Ensembl chr 4:66,566,686...66,717,241 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      perichromatin fibrils 8
Path 2
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      intracellular anatomical structure 15592
        intracellular organelle 13882
          intracellular membrane-bounded organelle 12309
            nucleus 7685
              nuclear lumen 4239
                nuclear chromosome 232
                  perichromatin fibrils 8
paths to the root