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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear chromosome
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Accession:GO:0000228 term browser browse the term
Definition:A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
Synonyms:narrow_synonym: nuclear interphase chromosome



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nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX, chromatin remodeler located_in ISO (MGI:2150845|PMID:11555636) RGD PMID:11555636 MGI:2150845 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A located_in ISO (MGI:1289851|PMID:9701556), (MGI:2150845|PMID:11555636) RGD PMID:9701556 PMID:11555636 MGI:1289851 MGI:2150845 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 located_in ISO (PMID:16322459) RGD PMID:16322459 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380
JBrowse link
G Blm BLM RecQ like helicase located_in ISO (PMID:23509288) RGD PMID:23509288 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 is_active_in ISO (PMID:9326634) RGD PMID:9326634 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
JBrowse link
G Exosc9 exosome component 9 located_in ISO
ISS
(PMID:24105744)
GO_REF:0000024
RGD
UniProt
PMID:24105744 GO_REF:0000024 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
G Fignl1 fidgetin-like 1 located_in ISO
ISS
(PMID:23754376)
GO_REF:0000024
RGD
UniProt
PMID:23754376 GO_REF:0000024 NCBI chr14:86,368,670...86,381,728
Ensembl chr14:86,368,675...86,377,455
JBrowse link
G H3c1 H3 clustered histone 1 located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,367,824...41,368,902
Ensembl chr17:41,368,386...41,368,856
JBrowse link
G H3f3a H3.3 histone A located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H4c3 H4 clustered histone 3 located_in ISO (PMID:14718166) RGD PMID:14718166
G H4f16 H4 histone 16 located_in ISO (PMID:14718166) RGD PMID:14718166
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G Hist1h3b histone cluster 1, H3b located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,722,805...42,723,925
Ensembl chr17:42,723,450...42,723,911
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h4 histone cluster 2, H4 located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A located_in ISO (PMID:14718166) RGD PMID:14718166
G Hmga2 high mobility group AT-hook 2 located_in ISS
ISO
GO_REF:0000024
(MGI:2150845|PMID:11555636)
UniProt
RGD
PMID:11555636 GO_REF:0000024 MGI:2150845 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U located_in
is_active_in
ISO
IBA
IEA
(PMID:11003645)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:11003645 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588
JBrowse link
G Ik IK cytokine colocalizes_with ISO
ISS
(PMID:24252166)
GO_REF:0000024
RGD
UniProt
PMID:24252166 GO_REF:0000024 NCBI chr18:28,358,004...28,372,809
Ensembl chr18:28,357,977...28,378,832
JBrowse link
G LOC100912290 histone H4-like located_in ISO (PMID:14718166) RGD PMID:14718166
G LOC102548682 histone H4-like located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102551184 histone H4-like located_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 located_in ISO (PMID:14718166) RGD PMID:14718166
G LOC684841 similar to CG31613-PA located_in ISO (PMID:14718166) RGD PMID:14718166
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:18936163) RGD PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Msh5 mutS homolog 5 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 colocalizes_with ISO (PMID:12138188) RGD PMID:12138188 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Pinx1 PIN2/TERF1 interacting, telomerase inhibitor 1 located_in ISO (PMID:19393617) RGD PMID:19393617 NCBI chr15:38,098,027...38,157,143
Ensembl chr15:38,097,886...38,157,140
JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:23754376) RGD PMID:23754376 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 located_in ISO (PMID:14718166) RGD PMID:14718166
G Setx senataxin located_in ISO (PMID:24105744) RGD PMID:24105744 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (PMID:10958694) RGD PMID:10958694 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Spidr scaffold protein involved in DNA repair located_in
is_active_in
ISO
IBA
(PMID:23509288)
PMID:21873635
RGD PMID:23509288 PMID:21873635 RGD:13792537 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
G Top1 DNA topoisomerase I colocalizes_with ISO (PMID:9049244) RGD PMID:9049244 NCBI chr 3:149,293,658...149,375,405
Ensembl chr 3:149,293,403...149,376,623
JBrowse link
G Top2a DNA topoisomerase II alpha colocalizes_with
located_in
ISO
IEA
(PMID:9049244)
GO_REF:0000107
RGD
Ensembl
PMID:9049244 GO_REF:0000107 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Zbtb32 zinc finger and BTB domain containing 32 located_in ISO (MGI:2150845|PMID:11555636) RGD PMID:11555636 MGI:2150845 NCBI chr 1:85,841,931...85,851,116
Ensembl chr 1:85,841,931...85,844,236
JBrowse link
alpha DNA polymerase:primase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit located_in
part_of
IDA
ISO
IBA
IEA
ISS
IC
(MGI:3687659|PMID:10523676)
(PMID:26975377)
(PMID:2175912), (PMID:22465957), (PMID:26975377), (PMID:8026492)
(MGI:1203906|PMID:9584195), (MGI:6478526|PMID:8026492)
PMID:21873635
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:2175912 PMID:8026492 PMID:9584195 PMID:10523676 PMID:22465957 More... GO_REF:0000024 GO_REF:0000107 MGI:1203906 MGI:3687659 MGI:6478526, RGD:1580605, RGD:13792537, RGD:2307013 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit located_in
part_of
TAS
ISO
ISS
IEA
IBA
IC
(MGI:3687659|PMID:10523676)
(PMID:26975377)
GO_REF:0000024
(PMID:22465957), (PMID:26975377), (PMID:8026492)
(MGI:1203906|PMID:9584195), (MGI:6478526|PMID:8026492)
GO_REF:0000107
PMID:21873635
RGD
UniProt
Ensembl
PMID:8026492 PMID:9584195 PMID:10523676 PMID:22465957 PMID:26975377 More... GO_REF:0000024 GO_REF:0000107 MGI:1203906 MGI:3687659 MGI:6478526, RGD:633584, RGD:13792537, RGD:2307013 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Prim1 DNA primase subunit 1 part_of
located_in
IBA
ISO
PMID:21873635
(MGI:3687659|PMID:10523676)
(PMID:26975377)
(PMID:26975377), (PMID:8026492)
(MGI:6478526|PMID:8026492)
RGD PMID:8026492 PMID:10523676 PMID:26975377 PMID:21873635 MGI:3687659 MGI:6478526, RGD:13792537 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 part_of
located_in
IBA
ISO
ISS
PMID:21873635
(MGI:3687659|PMID:10523676)
(PMID:26975377)
GO_REF:0000024
(PMID:26975377), (PMID:8026492)
(MGI:6478526|PMID:8026492)
RGD
UniProt
PMID:8026492 PMID:10523676 PMID:26975377 PMID:21873635 GO_REF:0000024 MGI:3687659 MGI:6478526, RGD:13792537 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
JBrowse link
Barr body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az1 H2A.Z variant histone 1 NOT|located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr 2:226,355,769...226,357,878
Ensembl chr 2:226,355,708...226,358,485
JBrowse link
G H3f3a H3.3 histone A located_in ISO (MGI:3528534|PMID:15657431) RGD PMID:15657431 MGI:3528534 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G Lrif1 ligand dependent nuclear receptor interacting factor 1 located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5803776|PMID:26391951)
(PMID:23542155)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23542155 PMID:26391951 GO_REF:0000024 GO_REF:0000107 MGI:5803776 NCBI chr 2:194,231,397...194,322,489
Ensembl chr 2:194,230,951...194,322,483
JBrowse link
G Macroh2a1 macroH2A.1 histone located_in ISO (PMID:11331621), (PMID:18936163) RGD PMID:11331621 PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone located_in ISO (PMID:11331621) RGD PMID:11331621 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 located_in
is_active_in
ISO
IBA
(PMID:23542155)
PMID:21873635
(MGI:3821390|PMID:18425126), (MGI:5803776|PMID:26391951)
RGD PMID:18425126 PMID:23542155 PMID:26391951 PMID:21873635 MGI:3821390 MGI:5803776, RGD:13792537 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Six6os1 Six6 opposite strand transcript 1 located_in
is_active_in
ISO
IBA
(MGI:5822939|PMID:27796301)
PMID:21873635
RGD PMID:27796301 PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254) RGD PMID:15944401 PMID:22164254 MGI:3581466 MGI:5315075 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in
is_active_in
ISO
IBA
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:15944401 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3581466 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980
JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in
is_active_in
ISO
IBA
(MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254)
PMID:21873635
RGD PMID:21637789 PMID:22164254 PMID:21873635 MGI:5008660 MGI:5315075, RGD:13792537 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)
Ensembl
RGD
PMID:12584241 PMID:23133398 PMID:21873635 GO_REF:0000107 MGI:2653770 MGI:5470363, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Tex11 testis expressed 11 located_in
is_active_in
ISO
IBA
(MGI:3774244|PMID:18316482)
PMID:21873635
RGD PMID:18316482 PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex12 testis expressed 12 located_in
is_active_in
ISO
IBA
(MGI:3664716|PMID:16968740), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:16968740 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3664716 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G LOC103690165 checkpoint protein HUS1B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Rad1 RAD1 checkpoint DNA exonuclease part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689
JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608
JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372
JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO
GO_REF:0000107
(MGI:3707920|PMID:17291760), (MGI:3719060|PMID:17696610), (MGI:5288570|PMID:21743440)
Ensembl
RGD
PMID:17291760 PMID:17696610 PMID:21743440 GO_REF:0000107 MGI:3707920 MGI:3719060 MGI:5288570 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:2183707|PMID:12091911), (MGI:3719060|PMID:17696610) RGD PMID:12091911 PMID:17696610 MGI:2183707 MGI:3719060 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
CMG complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Gins1 GINS complex subunit 1 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gins2 GINS complex subunit 2 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gins3 GINS complex subunit 3 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687
JBrowse link
G Gins4 GINS complex subunit 4 part_of
located_in
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22474384)
UniProt
Ensembl
RGD
PMID:22474384 GO_REF:0000024 GO_REF:0000107 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 located_in ISO (PMID:22474384) RGD PMID:22474384 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 part_of
located_in
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22474384)
UniProt
Ensembl
RGD
PMID:22474384 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 located_in
part_of
ISO
IEA
(PMID:22474384)
GO_REF:0000107
RGD
Ensembl
PMID:22474384 GO_REF:0000107 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in IEA
ISO
GO_REF:0000107
(MGI:80989|PMID:1864459)
Ensembl
RGD
PMID:1864459 GO_REF:0000107 MGI:80989 NCBI chr 1:252,147,341...252,255,126
Ensembl chr 1:252,147,386...252,255,124
JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (MGI:5437526|PMID:22863743) RGD PMID:22863743 MGI:5437526 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (MGI:4457793|PMID:20551173), (MGI:5700253|PMID:26490168) RGD PMID:20551173 PMID:26490168 MGI:4457793 MGI:5700253 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (MGI:1888422|PMID:10938129), (MGI:3654777|PMID:16339075), (MGI:3771631|PMID:18039861)
(PMID:10938129)
RGD PMID:10938129 PMID:16339075 PMID:18039861 MGI:1888422 MGI:3654777 MGI:3771631 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (MGI:5606256|PMID:24891606) RGD PMID:24891606 MGI:5606256 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Cdx2 caudal type homeo box 2 located_in ISO (MGI:3056244|PMID:15509711) RGD PMID:15509711 MGI:3056244 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS
(PMID:9382850)
GO_REF:0000024
RGD
UniProt
PMID:9382850 GO_REF:0000024 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in
is_active_in
ISO
IBA
(MGI:3774244|PMID:18316482), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5428050|PMID:22711701), (MGI:5586966|PMID:22530760), (MGI:5805564|PMID:27760146)
PMID:21873635
RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... MGI:3774244 MGI:3794139 MGI:4457793 MGI:5315075 MGI:5428050 MGI:5586966 MGI:5805564, RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in ISO (MGI:3623538|PMID:16543361) RGD PMID:16543361 MGI:3623538 NCBI chr20:10,614,933...10,629,516
Ensembl chr20:10,614,934...10,629,516
JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in ISO (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H2ax H2A.X variant histone located_in ISO (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5428050|PMID:22711701), (MGI:5477835|PMID:23555294), (MGI:5700253|PMID:26490168) RGD PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 MGI:4457793 MGI:5315075 MGI:5428050 MGI:5477835 MGI:5700253 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (MGI:5315075|PMID:22164254), (MGI:5586966|PMID:22530760) RGD PMID:22164254 PMID:22530760 MGI:5315075 MGI:5586966 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
JBrowse link
G Iho1 interactor of HORMAD1 1 located_in
is_active_in
ISO
IBA
(MGI:5822944|PMID:27723721)
PMID:21873635
RGD PMID:27723721 PMID:21873635 MGI:5822944, RGD:13792537 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434
JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:16298999) RGD PMID:16298999 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
JBrowse link
G Lig3 DNA ligase 3 located_in ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12762840)
HGNC-UCL
Ensembl
RGD
PMID:12762840 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:9,859,867...9,942,294
Ensembl chr 6:9,859,867...9,942,293
JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5477835|PMID:23555294), (MGI:5606256|PMID:24891606) RGD PMID:18316482 PMID:23555294 PMID:24891606 MGI:3774244 MGI:5477835 MGI:5606256 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:5606256|PMID:24891606) RGD PMID:24891606 MGI:5606256 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IDA sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Msh4 mutS homolog 4 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5315075|PMID:22164254), (MGI:5477835|PMID:23555294) RGD PMID:18316482 PMID:22164254 PMID:23555294 MGI:3774244 MGI:5315075 MGI:5477835 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G located_in ISO
IEA
(MGI:5644098|PMID:25474630)
GO_REF:0000107
RGD
Ensembl
PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr14:65,404,235...65,432,902
Ensembl chr14:65,404,163...65,432,902
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in ISO
IEA
(MGI:5644098|PMID:25474630)
GO_REF:0000107
RGD
Ensembl
PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in ISO
IEA
(MGI:5644098|PMID:25474630)
GO_REF:0000107
RGD
Ensembl
PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in ISO
IEA
(MGI:5644098|PMID:25474630)
GO_REF:0000107
RGD
Ensembl
PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
JBrowse link
G Nek2 NIMA-related kinase 2 located_in ISO (MGI:3057231|PMID:15479717) RGD PMID:15479717 MGI:3057231 NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051
JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO (PMID:11342549) RGD PMID:11342549 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896
JBrowse link
G Nol6 nucleolar protein 6 located_in ISO (MGI:2179879|PMID:11895476) RGD PMID:11895476 MGI:2179879 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336
JBrowse link
G Psmc3ip PSMC3 interacting protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423
JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (MGI:5575825|PMID:24797475) RGD PMID:24797475 MGI:5575825 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (MGI:5575825|PMID:24797475) RGD PMID:24797475 MGI:5575825 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad50 RAD50 double strand break repair protein is_active_in IDA
IBA
sex vesicles/chromatin of XY bivalent
PMID:21873635
RGD
GO_Central
PMID:10855503 PMID:21873635 RGD:2300257, RGD:13792537 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51 RAD51 recombinase located_in
is_active_in
ISO
IBA
(MGI:3027988|PMID:14668445), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5477835|PMID:23555294), (MGI:5586966|PMID:22530760), (MGI:5606256|PMID:24891606), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146)
PMID:21873635
RGD PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... MGI:3027988 MGI:3794139 MGI:4457793 MGI:5315075 MGI:5477835 MGI:5586966 MGI:5606256 MGI:5700253 MGI:5805564, RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) RGD PMID:15014043 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577
JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:3771209|PMID:18084284), (MGI:5315075|PMID:22164254), (MGI:5575825|PMID:24797475) RGD PMID:18084284 PMID:22164254 PMID:24797475 MGI:3771209 MGI:5315075 MGI:5575825 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Rpa1 replication protein A1 located_in ISO (MGI:3774244|PMID:18316482), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254) RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 MGI:3774244 MGI:3794139 MGI:4457793 MGI:5315075 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) RGD PMID:19465021 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140
JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (MGI:1203866|PMID:9578619) RGD PMID:9578619 MGI:1203866 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640
JBrowse link
G Shoc1 shortage in chiasmata 1 located_in
is_active_in
ISO
IBA
(MGI:6159552|PMID:29742103)
PMID:21873635
RGD PMID:29742103 PMID:21873635 MGI:6159552, RGD:13792537 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444
JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO
IEA
(MGI:5644098|PMID:25474630)
GO_REF:0000107
RGD
Ensembl
PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
G Stag3 stromal antigen 3 located_in ISO (MGI:5315075|PMID:22164254), (MGI:5575825|PMID:24797475) RGD PMID:22164254 PMID:24797475 MGI:5315075 MGI:5575825 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (MGI:3708891|PMID:17452644) RGD PMID:17452644 MGI:3708891 NCBI chr 7:111,275,374...111,292,565
Ensembl chr 7:111,275,380...111,292,553
JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (MGI:5437526|PMID:22863743), (MGI:5504589|PMID:22854038), (MGI:5567006|PMID:24589552), (MGI:5606256|PMID:24891606) RGD PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 MGI:5437526 MGI:5504589 MGI:5567006 MGI:5606256 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5285037|PMID:21621532), (MGI:5437526|PMID:22863743), (MGI:5567006|PMID:24589552), (MGI:5606256|PMID:24891606) RGD PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 MGI:3774244 MGI:5285037 MGI:5437526 MGI:5567006 MGI:5606256 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tex11 testis expressed 11 located_in ISO (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (MGI:3042347|PMID:14718568) RGD PMID:14718568 MGI:3042347 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674
JBrowse link
G Ttn titin located_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741
JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO (MGI:3688382|PMID:15007207) RGD PMID:15007207 MGI:3688382 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433
JBrowse link
delta DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit part_of IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit part_of
located_in
IC
IEA
ISO
IBA
IDA
GO_REF:0000117
(PMID:12403614)
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
UniProt
RGD
PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 PMID:21873635 More... GO_REF:0000117 MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit located_in
part_of
IC
ISO
IBA
IDA
(PMID:12403614)
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
RGD PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 PMID:21873635 More... MGI:6383350, RGD:2307013, RGD:13792537, RGD:729526 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit located_in
part_of
IC
ISO
IBA
(PMID:12403614)
(MGI:6383350|PMID:11595739)
PMID:21873635
(PMID:11595739), (PMID:22465957)
RGD PMID:11595739 PMID:12403614 PMID:22465957 PMID:7503737 PMID:21873635 MGI:6383350, RGD:2307013, RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit located_in
part_of
IC
ISO
IBA
(PMID:12403614)
PMID:21873635
RGD PMID:12403614 PMID:7503737 PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit part_of IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
DNA replication factor A complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcas2 BCAS2, pre-mRNA processing factor colocalizes_with
part_of
ISO
IEA
(PMID:24332808)
GO_REF:0000107
RGD
Ensembl
PMID:24332808 GO_REF:0000107 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389
JBrowse link
G Cdc5l cell division cycle 5-like colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease colocalizes_with ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Helb DNA helicase B colocalizes_with
part_of
ISO
IEA
(PMID:26774285)
GO_REF:0000107
RGD
Ensembl
PMID:26774285 GO_REF:0000107 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G LOC100362927 replication protein A3-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Plrg1 pleiotropic regulator 1 colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522
JBrowse link
G Prpf19 pre-mRNA processing factor 19 colocalizes_with ISO
ISS
(PMID:24332808)
GO_REF:0000024
RGD
UniProt
PMID:24332808 GO_REF:0000024 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Rpa1 replication protein A1 located_in
part_of
IDA
ISO
IBA
(PMID:11927569), (PMID:7760808)
UniProtKB:P15927 (PMID:11927569), (PMID:16135809), (PMID:27723717), (PMID:27723720)
PMID:21873635
RGD PMID:7760808 PMID:11927569 PMID:16135809 PMID:27723717 PMID:27723720 More... RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 located_in
part_of
IDA
ISO
IBA
(PMID:11927569)
UniProtKB:P27694 (PMID:11927569), (PMID:16135809), (PMID:2406247), (PMID:27723717), (PMID:27723720)
PMID:21873635
RGD PMID:2406247 PMID:11927569 PMID:16135809 PMID:27723717 PMID:27723720 More... RGD:2307012, RGD:13792537, RGD:2307013 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 located_in
part_of
IDA
ISO
IBA
(PMID:11927569), (PMID:7760808)
PMID:21873635
RGD PMID:7760808 PMID:11927569 PMID:7503737 PMID:21873635 RGD:2307013, RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 colocalizes_with ISS
ISO
GO_REF:0000024
(PMID:19793862), (PMID:19793863)
UniProt
RGD
PMID:19793862 PMID:19793863 GO_REF:0000024 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Tonsl tonsoku-like, DNA repair protein colocalizes_with ISO
ISS
(PMID:21055983)
GO_REF:0000024
RGD
UniProt
PMID:21055983 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor colocalizes_with ISO (PMID:7700386) RGD PMID:7700386 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
epsilon DNA polymerase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,135,927...26,136,235 JBrowse link
G AABR07052692.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:67,324,510...67,325,566 JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 part_of IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:109,236,160...109,236,825
Ensembl chr 7:109,236,321...109,236,758
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit part_of
located_in
ISO
IBA
(PMID:10801849), (PMID:22465957)
PMID:21873635
RGD PMID:10801849 PMID:22465957 PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit part_of
located_in
ISO
IBA
(PMID:10801849), (PMID:22465957)
PMID:21873635
RGD PMID:10801849 PMID:22465957 PMID:21873635 RGD:13792537 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit part_of
located_in
IBA
ISO
ISS
PMID:21873635
(PMID:10801849)
GO_REF:0000024
RGD
UniProt
PMID:10801849 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit part_of
located_in
IBA
ISO
PMID:21873635
(PMID:10801849)
RGD PMID:10801849 PMID:21873635 RGD:13792537 NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097
JBrowse link
G RGD1560349 similar to histone-fold protein CHRAC17 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:26,135,927...26,136,417 JBrowse link
GINS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:17417653)
RGD PMID:17417653 PMID:21873635 RGD:13792537 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gins2 GINS complex subunit 2 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:17417653)
RGD PMID:17417653 PMID:21873635 RGD:13792537 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gins3 GINS complex subunit 3 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:17417653)
RGD PMID:17417653 PMID:21873635 RGD:13792537 NCBI chr19:9,420,085...9,428,621
Ensembl chr19:9,420,086...9,428,687
JBrowse link
G Gins4 GINS complex subunit 4 part_of
located_in
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:17417653)
Ensembl
RGD
PMID:17417653 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A part_of
located_in
ISO (PMID:18026119), (PMID:21303910)
(PMID:21303910)
RGD PMID:18026119 PMID:21303910 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actr5 actin related protein 5 part_of
located_in
ISO
IBA
(PMID:18026119), (PMID:21303910)
(PMID:21303910)
PMID:21873635
RGD PMID:18026119 PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr8 actin related protein 8 part_of
located_in
ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
(PMID:21303910)
RGD PMID:18026119 PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Ino80 INO80 complex ATPase subunit part_of
located_in
IBA
ISO
PMID:21873635
(PMID:21303910)
(PMID:18026119), (PMID:21303910)
RGD PMID:18026119 PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80b INO80 complex subunit B part_of
located_in
IBA
ISO
PMID:21873635
(PMID:21303910)
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456
JBrowse link
G Ino80c INO80 complex subunit C part_of
located_in
ISO
IBA
(PMID:21303910)
PMID:21873635
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80d INO80 complex subunit D located_in
part_of
ISO
IEA
(PMID:21303910)
GO_REF:0000107
RGD
Ensembl
PMID:21303910 GO_REF:0000107 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242
JBrowse link
G Ino80e INO80 complex subunit E part_of
located_in
ISO
IBA
(PMID:21303910)
PMID:21873635
RGD PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Mcrs1 microspherule protein 1 part_of
located_in
ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein colocalizes_with
located_in
part_of
ISO (PMID:18922472)
(PMID:21303910)
RGD PMID:18922472 PMID:21303910 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of
located_in
ISO
IBA
(PMID:18026119), (PMID:21303910)
(PMID:21303910)
PMID:21873635
RGD PMID:18026119 PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:21303910)
(PMID:18026119), (PMID:21303910)
RGD PMID:18026119 PMID:21303910 PMID:21873635 RGD:13792537 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Tfpt TCF3 fusion partner part_of
located_in
IEA
ISO
IBA
GO_REF:0000107
(PMID:21303910)
PMID:21873635
Ensembl
RGD
PMID:21303910 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 colocalizes_with
located_in
part_of
ISO (PMID:18922472)
(PMID:21303910)
RGD PMID:18922472 PMID:21303910 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502
JBrowse link
G Yy1 YY1 transcription factor part_of
located_in
ISO (PMID:18026119), (PMID:21303910)
(PMID:21303910)
RGD PMID:18026119 PMID:21303910 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5805564|PMID:27760146)
Ensembl
RGD
PMID:27760146 GO_REF:0000107 MGI:5805564 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA
(PMID:9774970)
GO_REF:0000107
RGD
Ensembl
PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA
(PMID:9774970)
GO_REF:0000107
RGD
Ensembl
PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Kash5 KASH domain containing 5 located_in
is_active_in
ISO
IBA
(MGI:5515826|PMID:24062341)
PMID:21873635
RGD PMID:24062341 PMID:21873635 MGI:5515826, RGD:13792537 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in
is_active_in
ISO
IBA
(MGI:4457793|PMID:20551173)
PMID:21873635
RGD PMID:20551173 PMID:21873635 MGI:4457793, RGD:13792537 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (MGI:5288570|PMID:21743440) RGD PMID:21743440 MGI:5288570 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad51 RAD51 recombinase located_in ISO (MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440)
(PMID:9774970)
RGD PMID:9774970 PMID:18694567 PMID:21743440 MGI:3813746 MGI:5288570 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Rpa1 replication protein A1 located_in ISO (MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701) RGD PMID:21743440 PMID:22711701 MGI:5288570 MGI:5428050 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701) RGD PMID:15870106 PMID:22711701 MGI:3578071 MGI:5428050 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO
GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
Ensembl
RGD
PMID:15870106 PMID:22711701 GO_REF:0000107 MGI:3578071 MGI:5428050 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Stag3 stromal antigen 3 located_in ISO (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in
IDA
IBA
ISO
PMID:9933407
PMID:21873635
(MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)
RGD PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 More... MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363, RGD:11035335, RGD:13792537 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Sycp2l synaptonemal complex protein 2-like located_in
is_active_in
ISO
IBA
(MGI:5692009|PMID:26362258)
PMID:21873635
RGD PMID:26362258 PMID:21873635 MGI:5692009, RGD:13792537 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO
PMID:9933407
(MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)
RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094, RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
nuclear meiotic cohesin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad21 RAD21 cohesin complex component part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23242214)
RGD PMID:23242214 PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 part_of IBA
ISO
PMID:21873635
(MGI:5315075|PMID:22164254)
RGD PMID:22164254 PMID:21873635 MGI:5315075, RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rec8 REC8 meiotic recombination protein part_of IBA
ISO
PMID:21873635
(MGI:5288570|PMID:21743440), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
RGD PMID:21743440 PMID:22164254 PMID:22854038 PMID:21873635 MGI:5288570 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Smc1a structural maintenance of chromosomes 1A located_in
part_of
ISO
IEA
(PMID:23242214)
GO_REF:0000107
RGD
Ensembl
PMID:23242214 GO_REF:0000107 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056
JBrowse link
G Smc1b structural maintenance of chromosomes 1B part_of ISO (MGI:5288570|PMID:21743440), (MGI:5315075|PMID:22164254) RGD PMID:21743440 PMID:22164254 MGI:5288570 MGI:5315075 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Smc3 structural maintenance of chromosomes 3 part_of
located_in
IEA
ISO
GO_REF:0000107
(PMID:23242214)
(MGI:5288570|PMID:21743440), (MGI:5315075|PMID:22164254)
Ensembl
RGD
PMID:21743440 PMID:22164254 PMID:23242214 GO_REF:0000107 MGI:5288570 MGI:5315075 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Stag2 stromal antigen 2 located_in
part_of
ISO
IEA
(PMID:23242214)
GO_REF:0000107
RGD
Ensembl
PMID:23242214 GO_REF:0000107 NCBI chr  X:120,974,687...121,105,677
Ensembl chr  X:120,974,857...121,105,677
JBrowse link
G Stag3 stromal antigen 3 part_of ISO (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
nuclear mitotic cohesin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad21 RAD21 cohesin complex component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rec8 REC8 meiotic recombination protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Smc3 structural maintenance of chromosomes 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
nuclear origin of replication recognition complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 part_of ISO
IBA
(PMID:20932478), (PMID:21029866)
PMID:21873635
RGD PMID:20932478 PMID:21029866 PMID:21873635 RGD:13792537 NCBI chr12:20,530,072...20,543,078
Ensembl chr12:20,530,012...20,549,536
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 part_of ISO (MGI:2673102|PMID:12941272) RGD PMID:12941272 MGI:2673102 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Orc1 origin recognition complex, subunit 1 part_of ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20932478), (PMID:21029866)
UniProt
RGD
PMID:20932478 PMID:21029866 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375
JBrowse link
G Orc2 origin recognition complex, subunit 2 part_of ISO
IBA
(PMID:20932478), (PMID:21029866)
(MGI:2673102|PMID:12941272)
PMID:21873635
RGD PMID:12941272 PMID:20932478 PMID:21029866 PMID:21873635 MGI:2673102, RGD:13792537 NCBI chr 9:60,001,631...60,038,301
Ensembl chr 9:60,001,910...60,038,195
JBrowse link
G Orc3 origin recognition complex, subunit 3 part_of IEA
ISS
ISO
IBA
GO_REF:0000002
GO_REF:0000107
GO_REF:0000024
(PMID:20932478), (PMID:21029866)
PMID:21873635
InterPro
Ensembl
UniProt
RGD
PMID:20932478 PMID:21029866 PMID:21873635 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 5:49,123,758...49,181,552
Ensembl chr 5:49,126,955...49,181,633
JBrowse link
G Orc4 origin recognition complex, subunit 4 part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20932478)
UniProt
RGD
PMID:20932478 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:33,290,844...33,334,022
Ensembl chr 3:33,294,355...33,333,824
JBrowse link
G Orc5 origin recognition complex, subunit 5 part_of ISO
IBA
(PMID:20932478)
PMID:21873635
RGD PMID:20932478 PMID:21873635 RGD:13792537 NCBI chr 4:12,548,007...12,612,611
Ensembl chr 4:12,548,007...12,612,568
JBrowse link
G Orc6 origin recognition complex, subunit 6 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:21,757,867...21,765,638
Ensembl chr19:21,757,866...21,765,662
JBrowse link
nuclear replication fork term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B colocalizes_with ISO (PMID:15543136) RGD PMID:15543136 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Etaa1 ETAA1 activator of ATR kinase located_in
is_active_in
ISO
IBA
(PMID:27723717), (PMID:27723720)
PMID:21873635
RGD PMID:27723717 PMID:27723720 PMID:21873635 RGD:13792537 Ensembl chr14:92,299,553...92,314,104 JBrowse link
G Mms22l MMS22-like, DNA repair protein located_in
is_active_in
ISO
IBA
(PMID:21055983), (PMID:21055984)
PMID:21873635
RGD PMID:21055983 PMID:21055984 PMID:21873635 RGD:13792537 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
JBrowse link
G Pcna proliferating cell nuclear antigen located_in ISO (PMID:15543136), (PMID:21383955) RGD PMID:15543136 PMID:21383955 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 colocalizes_with ISO (PMID:15543136) RGD PMID:15543136 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` located_in ISO (PMID:21549307) RGD PMID:21549307 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Tonsl tonsoku-like, DNA repair protein located_in ISS
ISO
GO_REF:0000024
(PMID:21055983), (PMID:21055984)
UniProt
RGD
PMID:21055983 PMID:21055984 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
G Trex1 three prime repair exonuclease 1 located_in ISO (MGI:3818783|PMID:18045533) RGD PMID:18045533 MGI:3818783 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096
JBrowse link
G Zmiz2 zinc finger, MIZ-type containing 2 located_in ISO (PMID:16051670) RGD PMID:16051670 NCBI chr14:81,251,391...81,267,936
Ensembl chr14:81,251,417...81,267,936
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 located_in
is_active_in
ISO
IBA
(PMID:22704558), (PMID:22705370), (PMID:22759634)
PMID:21873635
RGD PMID:22704558 PMID:22705370 PMID:22759634 PMID:21873635 RGD:13792537 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
nucleolus organizer region term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt7 sirtuin 7 located_in ISO (PMID:19174463) RGD PMID:19174463 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
perichromatin fibrils term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator IDA RGD PMID:16208722 RGD:10401943 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 located_in ISO (PMID:17267687) RGD PMID:17267687 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Dhx9 DExH-box helicase 9 located_in ISO (PMID:10198287) RGD PMID:10198287 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 located_in ISO (PMID:12941608) RGD PMID:12941608 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 located_in ISO (MGI:1339222|PMID:10318760) RGD PMID:10318760 MGI:1339222 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 IDA MMO:0000663 RGD PMID:19321046 RGD:150429709 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338
JBrowse link
G Tardbp TAR DNA binding protein IDA RGD PMID:19539030 RGD:5687141 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055
JBrowse link
G Trim24 tripartite motif-containing 24 located_in ISO (MGI:1339222|PMID:10318760) RGD PMID:10318760 MGI:1339222 NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241
JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
replication fork protection complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm10 minichromosome maintenance 10 replication initiation factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:73,263,788...73,288,346
Ensembl chr17:73,266,095...73,287,364
JBrowse link
G Timeless timeless circadian regulator part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738
JBrowse link
G Tipin timeless interacting protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:64,780,741...64,801,355
Ensembl chr 8:64,780,828...64,801,352
JBrowse link
G Tipinl1 TIMELESS interacting protein like 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:113,542,841...113,544,022
Ensembl chr 9:113,543,173...113,605,998
JBrowse link
Sin3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07024825.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Csnk2a1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696
JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO (PMID:14966270), (PMID:17827154) RGD PMID:14966270 PMID:17827154 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Ing2 inhibitor of growth family, member 2 part_of ISO (PMID:16387653) RGD PMID:16387653 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482
JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of ISO
ISS
(PMID:14966270)
GO_REF:0000024
RGD
UniProt
PMID:14966270 GO_REF:0000024 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Phf12 PHD finger protein 12 part_of ISO (PMID:22048773) RGD PMID:22048773 NCBI chr10:62,871,309...62,919,026
Ensembl chr10:62,872,195...62,919,000
JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of IBA
ISO
PMID:21873635
(PMID:14966270), (PMID:17827154)
RGD PMID:14966270 PMID:17827154 PMID:21873635 RGD:13792537 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
JBrowse link
G Sin3b SIN3 transcription regulator family member B part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:17,123,277...17,160,070
Ensembl chr16:17,123,434...17,159,978
JBrowse link
G Sinhcaf SIN3-HDAC complex associated factor part_of IBA
ISO
PMID:21873635
(PMID:22984288)
RGD PMID:22984288 PMID:21873635 RGD:13792537 NCBI chr 4:181,888,301...181,913,294
Ensembl chr 4:181,888,312...181,910,276
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of ISO (MGI:2670031|PMID:11909966) RGD PMID:11909966 MGI:2670031 NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628
JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brms1 BRMS1, transcriptional repressor and anoikis regulator part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,345,766...202,355,028
Ensembl chr 1:202,345,704...202,355,028
JBrowse link
G Brms1l BRMS1 like transcriptional repressor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:73,266,673...73,300,631
Ensembl chr 6:73,266,691...73,300,631
JBrowse link
G Phf12 PHD finger protein 12 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:62,871,309...62,919,026
Ensembl chr10:62,872,195...62,919,000
JBrowse link
G Sap130 Sin3A associated protein 130 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,244,337...23,345,368
Ensembl chr18:23,267,256...23,345,359
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628
JBrowse link
Slx1-Slx4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit part_of ISO
IBA
(PMID:19595721), (PMID:19596235), (PMID:19596236)
PMID:21873635
RGD PMID:19595721 PMID:19596235 PMID:19596236 PMID:21873635 RGD:13792537 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit part_of IBA
ISO
PMID:21873635
(PMID:19595721), (PMID:19596235), (PMID:19596236)
RGD PMID:19595721 PMID:19596235 PMID:19596236 PMID:21873635 RGD:13792537 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
Swi5-Sfr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067300.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC134087.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RGD1561465 similar to RIKEN cDNA 2900010J23 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:145,014,246...145,014,612
Ensembl chr 5:145,014,261...145,014,509
JBrowse link
G Sfr1 SWI5-dependent homologous recombination repair protein 1 part_of IBA
ISO
IEA
ISS
PMID:21873635
(MGI:4868525|PMID:20976249)
GO_REF:0000107
GO_REF:0000024
(PMID:21252223)
RGD
Ensembl
UniProt
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4868525, RGD:13792537 NCBI chr 1:246,619,235...246,623,250
Ensembl chr 1:246,597,044...246,623,250
JBrowse link
G Swi5 SWI5 homologous recombination repair protein part_of IBA
ISO
ISS
PMID:21873635
(MGI:4868525|PMID:20976249)
GO_REF:0000024
(PMID:21252223)
RGD
UniProt
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 MGI:4868525, RGD:13792537 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805
JBrowse link
Swi5-Swi2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067300.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC134087.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RGD1561465 similar to RIKEN cDNA 2900010J23 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:145,014,246...145,014,612
Ensembl chr 5:145,014,261...145,014,509
JBrowse link
G Swi5 SWI5 homologous recombination repair protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805
JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067
JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISS
ISO
GO_REF:0000024
(PMID:24463511)
UniProt
RGD
PMID:24463511 GO_REF:0000024 NCBI chr 2:183,472,600...183,489,057
Ensembl chr 2:183,472,609...183,489,054
JBrowse link
G Brd8 bromodomain containing 8 part_of ISO
IEA
(PMID:24463511)
GO_REF:0000107
RGD
Ensembl
PMID:24463511 GO_REF:0000107 NCBI chr18:26,181,744...26,230,035
Ensembl chr18:26,181,732...26,229,884
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Ep400 E1A binding protein p400 part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Ing3 inhibitor of growth family, member 3 part_of ISS
ISO
GO_REF:0000024
(PMID:24463511)
UniProt
RGD
PMID:24463511 GO_REF:0000024 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715
JBrowse link
G Kat5 lysine acetyltransferase 5 part_of ISO
ISS
(PMID:24463511)
GO_REF:0000024
RGD
UniProt
PMID:24463511 GO_REF:0000024 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO
IBA
ISS
(PMID:24463511)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24463511 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of IBA
ISO
PMID:21873635
(PMID:24463511)
RGD PMID:24463511 PMID:21873635 RGD:13792537 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Srcap Snf2-related CREBBP activator protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610
JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 colocalizes_with ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO
GO_REF:0000024
(MGI:2662793|PMID:12764197)
UniProt
RGD
PMID:12764197 GO_REF:0000024 MGI:2662793 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350
JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910
JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (MGI:82564|PMID:8622925) RGD PMID:8622925 MGI:82564 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287
JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Lig3 DNA ligase 3 located_in ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G LOC100911002 synaptonemal complex protein 3-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,990,742...151,008,064
Ensembl chr  X:150,990,735...151,003,268
JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614
JBrowse link
G Mlh1 mutL homolog 1 located_in IEA
IDA
ISO
GO_REF:0000107
PMID:16968740
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
Ensembl
RGD
PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107 MGI:3056006 MGI:3612193, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499) RGD PMID:15467367 PMID:16260499 MGI:3056006 MGI:3612193 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh4 mutS homolog 4 located_in
is_active_in
ISO
IBA
(MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499)
PMID:21873635
RGD PMID:10809667 PMID:16260499 PMID:21873635 MGI:1858570 MGI:3612193, RGD:13792537 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Msh5 mutS homolog 5 located_in ISO (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093
JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5504589|PMID:22854038)
Ensembl
RGD
PMID:22854038 GO_REF:0000107 MGI:5504589 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400
JBrowse link
G Rad21 RAD21 cohesin complex component is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rec8 REC8 meiotic recombination protein located_in
is_active_in
ISO
IBA
(MGI:2667549|PMID:12759374)
PMID:21873635
RGD PMID:12759374 PMID:21873635 MGI:2667549, RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G RGD1559891 similar to synaptonemal complex protein 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630
JBrowse link
G Rnf212 ring finger protein 212 colocalizes_with
is_active_in
ISO
IBA
(MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
PMID:21873635
RGD PMID:23396135 PMID:24390283 PMID:21873635 MGI:5487470 MGI:5545848, RGD:13792537 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740) RGD PMID:11564881 PMID:16968740 MGI:2150452 MGI:3664716 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Stag3 stromal antigen 3 located_in TAS
ISO
(MGI:1354041|PMID:10698974) RGD PMID:10698974 PMID:11599053 MGI:1354041, RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in
IDA
IBA
PMID:16968740
PMID:21873635
MGI
GO_Central
PMID:16968740 PMID:21873635 RGD:8554354, RGD:13792537 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526
JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
(MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657) RGD PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:9686370 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO
(MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 MGI:3774244 MGI:5692009, RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in
ISO
IBA
(MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657)
(PMID:9774970)
PMID:21873635
RGD PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:13792537 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Syn1 synapsin I located_in ISO (MGI:3027482|PMID:14736746) RGD PMID:14736746 MGI:3027482 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396
JBrowse link
G Tex11 testis expressed 11 colocalizes_with ISO (MGI:3797180|PMID:18369460) RGD PMID:18369460 MGI:3797180 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex12 testis expressed 12 located_in ISO (MGI:3664716|PMID:16968740) RGD PMID:16968740 MGI:3664716 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
G Wapl WAPL cohesin release factor located_in ISO (MGI:3525912|PMID:15620708) RGD PMID:15620708 MGI:3525912 NCBI chr16:10,005,520...10,075,270
Ensembl chr16:10,004,941...10,073,510
JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,967,362...150,979,056
Ensembl chr  X:150,967,919...150,978,992
JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786
JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 stromal antigen 3 located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Sycp1 synaptonemal complex protein 1 is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701)
GO_REF:0000107
RGD
Ensembl
PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 More... GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050, RGD:729937, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19686
      membrane-enclosed lumen 4387
        organelle lumen 4387
          intracellular organelle lumen 4386
            nuclear lumen 3932
              nuclear chromosome 243
                Barr body 6
                CMG complex 11
                COMA complex 0
                GINS complex 4
                Ino80 complex 16
                RITS complex 0
                Rpd3L-Expanded complex 0
                Set3 complex 0
                Sin3-type complex + 14
                Slx1-Slx4 complex 2
                Smp focus 0
                Swi5-Sfr1 complex 5
                Swi5-Swi2 complex 4
                Swr1 complex 13
                condensed nuclear chromosome + 87
                epsilon DNA polymerase complex 8
                nuclear origin of replication recognition complex 8
                nuclear replication fork + 36
                nucleolar chromatin + 1
                perichromatin fibrils 8
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19686
      intracellular anatomical structure 14329
        intracellular organelle 12679
          intracellular membrane-bounded organelle 11208
            nucleus 7044
              nuclear lumen 3932
                nuclear chromosome 243
                  Barr body 6
                  CMG complex 11
                  COMA complex 0
                  GINS complex 4
                  Ino80 complex 16
                  RITS complex 0
                  Rpd3L-Expanded complex 0
                  Set3 complex 0
                  Sin3-type complex + 14
                  Slx1-Slx4 complex 2
                  Smp focus 0
                  Swi5-Sfr1 complex 5
                  Swi5-Swi2 complex 4
                  Swr1 complex 13
                  condensed nuclear chromosome + 87
                  epsilon DNA polymerase complex 8
                  nuclear origin of replication recognition complex 8
                  nuclear replication fork + 36
                  nucleolar chromatin + 1
                  perichromatin fibrils 8
paths to the root