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ONTOLOGY REPORT - ANNOTATIONS

Term:ganglioside metabolic process
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Accession:GO:0001573 term browser browse the term
Definition:The chemical reactions and pathways involving ceramide oligosaccharides carrying in addition to other sugar residues, one or more sialic acid residues.
Synonyms:exact_synonym: ganglioside metabolism


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ganglioside metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA2 ATP binding cassette subfamily A member 2 involved_in ISO (PMID:17488728) UniProt PMID:17488728 NCBI chr 9:48,610,906...48,630,932
Ensembl chr 9:48,613,996...48,629,857 		JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr30:32,246,394...32,264,251
Ensembl chr30:32,246,411...32,264,240 		JBrowse link
G GM2A ganglioside GM2 activator ISO RGD PMID:9770472 RGD:1598995 NCBI chr 4:58,002,438...58,016,003
Ensembl chr 4:58,003,946...58,015,753 		JBrowse link
G ITGB8 integrin subunit beta 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16251442) Ensembl
MGI		 PMID:16251442 GO_REF:0000107 NCBI chr14:34,370,957...34,449,091
Ensembl chr14:34,349,232...34,444,235 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21408219) Ensembl
MGI		 PMID:21408219 GO_REF:0000107 NCBI chr 9:20,407,296...20,414,094
Ensembl chr 9:20,407,281...20,414,056 		JBrowse link
ganglioside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GALT4 beta-1,3-galactosyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,719,112...2,720,997 JBrowse link
G B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10021458) Ensembl
MGI		 PMID:10021458 GO_REF:0000107 NCBI chr10:1,703,846...1,756,837
Ensembl chr10:1,703,169...1,709,994 		JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10702226) Ensembl
MGI		 PMID:10702226 GO_REF:0000107 NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055 		JBrowse link
G ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:47,588,804...47,654,853
Ensembl chr 3:47,588,797...47,655,593 		JBrowse link
G ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,541,197...18,557,887
Ensembl chr 1:18,549,942...18,557,893 		JBrowse link
G ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:9,708,130...9,801,547
Ensembl chr 3:9,708,173...9,845,015 		JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:19,392,690...19,618,127
Ensembl chr 2:19,482,468...19,616,339 		JBrowse link
ganglioside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4GALT5 beta-1,4-galactosyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:36,220,973...36,241,482
Ensembl chr24:36,221,189...36,300,804 		JBrowse link
G B4GALT6 beta-1,4-galactosyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:57,849,872...57,917,289
Ensembl chr 7:57,849,884...57,914,360 		JBrowse link
G ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:29,853,182...29,949,004
Ensembl chr13:29,846,834...29,872,918 		JBrowse link
G ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,377,782...76,427,998
Ensembl chr 5:76,379,702...76,394,525 		JBrowse link
G ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:16,324,752...16,434,256
Ensembl chr15:16,324,899...16,401,616 		JBrowse link
ganglioside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLB1 galactosidase beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:3,721,768...3,814,209
Ensembl chr23:3,732,040...3,814,191 		JBrowse link
G GM2A ganglioside GM2 activator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9223328) Ensembl
MGI
InterPro		 PMID:9223328 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:58,002,438...58,016,003
Ensembl chr 4:58,003,946...58,015,753 		JBrowse link
G HEXA hexosaminidase subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7937929), (PMID:9223328)
(PMID:8789434), (PMID:9645704)		 Ensembl
MGI		 PMID:7937929 PMID:8789434 PMID:9223328 PMID:9645704 GO_REF:0000107 NCBI chr30:35,836,788...35,862,525 JBrowse link
G HEXB hexosaminidase subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8566348)
(PMID:10021458), (PMID:12657883), (PMID:12756243), (PMID:15748167), (PMID:9223328)
(PMID:8789434), (PMID:9645704)		 Ensembl
MGI		 PMID:8566348 PMID:8789434 PMID:9223328 PMID:9645704 PMID:10021458 More... GO_REF:0000107 NCBI chr 2:57,221,809...57,248,432
Ensembl chr 2:57,222,186...57,248,417 		JBrowse link
G NEU2 neuraminidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:44,563,664...44,596,837
Ensembl chr25:44,563,411...44,595,653 		JBrowse link
G NEU3 neuraminidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:23,456,424...23,484,872 JBrowse link
G NEU4 neuraminidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:51,594,865...51,602,500 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17101
    cellular process 16595
      metabolic process 10708
        amide metabolic process 434
          ceramide metabolic process 103
            ganglioside metabolic process 23
              ganglioside biosynthetic process + 12
              ganglioside catabolic process 7
Path 2
Term Annotations click to browse term
  biological_process 17101
    cellular process 16595
      metabolic process 10708
        primary metabolic process 9413
          lipid metabolic process 1290
            membrane lipid metabolic process 188
              sphingolipid metabolic process 140
                ceramide metabolic process 103
                  ganglioside metabolic process 23
                    ganglioside biosynthetic process + 12
                    ganglioside catabolic process 7
paths to the root