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orchitis - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:orchitis
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Accession:DOID:2518 term browser browse the term
Definition:Inflammation of a TESTIS. It has many features of EPIDIDYMITIS, such as swollen SCROTUM; PAIN; PYURIA; and FEVER. It is usually related to infections in the URINARY TRACT, which likely spread to the EPIDIDYMIS and then the TESTIS through either the VAS DEFERENS or the lymphatics of the SPERMATIC CORD.
Synonyms:exact_synonym: Orchitides;   inflammation of testis;   orchititis
 primary_id: MESH:D009920
 xref: EFO:1001078;   ICD10CM:N45.2;   NCI:C97145
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orchitis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 ISO RGD PMID:11897701 RGD:704384 NCBI chrNW_004955481:10,293,758...10,301,118
Ensembl chrNW_004955481:10,293,399...10,301,143 		JBrowse link
G Cd86 CD86 molecule ISO protein:increased expression:testis, macrophage (rat) RGD PMID:18381617 RGD:4892229 NCBI chrNW_004955427:21,375,820...21,436,767
Ensembl chrNW_004955427:21,375,794...21,435,874 		JBrowse link
G Il6r interleukin 6 receptor ISO protein:increased expression:male germ cell RGD PMID:16458979 RGD:1625434 NCBI chrNW_004955545:932,814...979,359
Ensembl chrNW_004955545:950,765...981,762 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO protein:increased expression:testes, endothelial cells (rat) RGD PMID:22351899 RGD:6767571 NCBI chrNW_004955478:7,448,584...7,531,860
Ensembl chrNW_004955478:7,478,492...7,531,188 		JBrowse link
Experimental Autoimmune Orchitis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:16092147 RGD:1624236 NCBI chrNW_004955408:937,706...944,969
Ensembl chrNW_004955408:936,595...948,064 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 ISO RGD PMID:16092147 RGD:1624236 NCBI chrNW_004955403:3,062,724...3,073,419
Ensembl chrNW_004955403:3,063,133...3,073,419 		JBrowse link
G Inha inhibin subunit alpha ISO protein:decreased expression:serum: RGD PMID:11431143 RGD:8694089 NCBI chrNW_004955453:13,902,443...13,905,008
Ensembl chrNW_004955453:13,902,277...13,905,008 		JBrowse link
G LOC102021597 alpha-1-antiproteinase S-like ISO protein:increased expression:serum RGD PMID:16092147 RGD:1624236 NCBI chrNW_004955438:17,920,200...17,929,105 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14336
    disease of anatomical entity 14030
      endocrine system disease 5752
        gonadal disease 1297
          testicular disease 157
            orchitis 8
              Experimental Autoimmune Orchitis 4
Path 2
Term Annotations click to browse term
  disease 14336
    disease of anatomical entity 14030
      Urogenital Diseases 4565
        reproductive system disease 2906
          male reproductive system disease 1838
            testicular disease 157
              orchitis 8
                Experimental Autoimmune Orchitis 4
paths to the root